FFCP PHASE1:Hg19::chr11:1892551..1892608,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4046 | |EntrezGene=4046 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6707 | |HGNC=6707 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000472974_5end | |association_with_transcript=0bp_to_ENST00000472974_5end | ||
|cluster_id=chr11:1892551..1892608,+ | |||
|description=CAGE_peak_3_at_LSP1_5end | |description=CAGE_peak_3_at_LSP1_5end | ||
|id=chr11:1892551..1892608,+ | |id=chr11:1892551..1892608,+ | ||
|ontology_enrichment_celltype=CL:0000188!4.12e-09!9;CL:0000055!2.16e-08!180;CL:0002570!2.72e-07!8 | |ontology_enrichment_celltype=CL:0000188!4.12e-09!9;CL:0000055!2.16e-08!180;CL:0002570!2.72e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000188;1.21e-12;9!CL:0000680;1.14e-10;7!CL:0000327;7.29e-09;15!CL:0002570;1.81e-08;8!CL:0000153;1.37e-07;9!CL:0000447;1.37e-07;9!CL:0000056;3.85e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,1.14e-12,9;CL:0000327,7.46e-09,15;CL:0002570,1.85e-08,8;CL:0000153,1.39e-07,9;CL:0000447,1.39e-07,9;CL:0000515,3.86e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000515;3.85e-07;4 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.31e-13!115;UBERON:0000479!8.44e-09!787;UBERON:0000481!3.06e-08!347;UBERON:0001013!4.87e-08!14 | |ontology_enrichment_uberon=UBERON:0007023!5.31e-13!115;UBERON:0000479!8.44e-09!787;UBERON:0000481!3.06e-08!347;UBERON:0001013!4.87e-08!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0001134;4.08e-18;16!UBERON:0002036;4.08e-18;16!UBERON:0002385;2.19e-11;31!UBERON:0001015;2.19e-11;31!UBERON:0000383;2.19e-11;31!UBERON:0002204;3.17e-10;70!UBERON:0004905;3.88e-09;8!UBERON:0000982;3.88e-09;8!UBERON:0004770;3.88e-09;8!UBERON:0001013;6.71e-09;14!UBERON:0011135;3.96e-08;5!UBERON:0002216;3.96e-08;5!UBERON:0011134;3.96e-08;5!UBERON:0002209;3.96e-08;5!UBERON:0002213;3.96e-08;5!UBERON:0007844;3.96e-08;5!UBERON:0011138;3.96e-08;5!UBERON:0001130;3.96e-08;5!UBERON:0001066;3.96e-08;5!UBERON:0001468;3.96e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.92e-09,114;UBERON:0004905,3.79e-09,8;UBERON:0000982,3.79e-09,8;UBERON:0004770,3.79e-09,8;UBERON:0001013,6.97e-09,14;UBERON:0011135,3.86e-08,5;UBERON:0002216,3.86e-08,5;UBERON:0011134,3.86e-08,5;UBERON:0002209,3.86e-08,5;UBERON:0002213,3.86e-08,5;UBERON:0005856,3.86e-08,5;UBERON:0005866,3.86e-08,5;UBERON:0005863,3.86e-08,5;UBERON:0007844,3.86e-08,5;UBERON:0011138,3.86e-08,5;UBERON:0001130,3.86e-08,5;UBERON:0001066,3.86e-08,5;UBERON:0001468,3.86e-08,5;UBERON:0003104,1.42e-07,160;UBERON:0009142,1.42e-07,160;UBERON:0000479,5.26e-07,773 | |||
|phase1_expression=1.63510541343501,0.856402095563933,0.140954404095971,0,0,0.872338524100369,0,26.5322346839269,69.4753771011571,0,0,0,0,124.880250136687,58.988732879569,0,0,0,0,0.61560529038394,2.85600967741954,0.626909442956176,0.286235987131057,0.547497700291537,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0.145398238779565,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0.670700859703636,0,11.5660528763061,35.0936537445123,11.0083354410226,32.6067238290951,22.8718389042239,0.378139268656271,0.221729397462564,0.351339142772504,2.48860243445654,0,1.11235332835329,0.324547393654683,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0,0,0,0,0,0.74000264525148,5.91300967259556,0.134710672069688,0.490385709340376,2.57307626996383,6.33793516927999,119.035287371569,0.312160076830321,0,2.09228152772521,0.117434498643765,0.323745888736263,0.280901613404497,0.816616685019573,2.45668634623536,3.09977343527296,0,0,12.7422590671324,0.718618141816238,4.37673896280572,7.50711119231785,0,0.877955241761676,0,0.751190294532984,1.02088964844019,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0.484938170456436,0,0,0,0,0,0,0,0,0.116193942869518,0.310983165046111,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,35.0604434508615,2.8810180793198,10.2906097969879,0,0,0.590789906681404,0,0,0,0,0,3.11639814476056,8.05519472879207,116.965181606407,216.306435338152,0,1.62302566965108,0.117408694235822,0,0,0,0,0,0,0,0.148631162288728,0,0.16798212819886,0,0,0,0,0,0,0,0,0.25248486685276,0,0,0,1.71072446022705,0,0,0,1.79409734952577,0,1.10007428731425,0,239.629818720761,5.071816515336,0,0,3.60090323966999,0,1.3321108950805,0.428933980974443,482.933228798384,33.7528538080115,4.56030658011229,1.06617584622764,12.6712299669349,0,0,0.099972991182057,0,0,0,0,0,37.0855953105868,44.8822050669496,120.409125014525,132.326051834283,0,0.197030760201927,0,0,0,0,0,0.167516265334349,0,0,2.99161459204025,0,43.5554795602947,27.5093786582822,11.9356610427884,0,0,0,0,1.20378439891088,4.5481500811197,3.10419213877515,0.664225598535437,0.921845842708516,0,80.6700768746491,54.2166609621152,0.206768026122887,0,0,0,1.66435439510497,0.907170879989041,0.496215615637554,0.153461973288062,0.561320188866147,0.128139149255701,0.511707249066704,0,0,0,4.08391968220192,0.574890092096664,0,0.929683027679674,0.120859449591622,0,0,0,0.182091168006717,0,0,0,1.56869953835371,0,0,0,0,0.215915916102139,0,2.98041081298238,3.01013864312912,0,0,0.671624264166535,0,0,0,0.328014645699706,0,1.44257416306811,2.93022287418699,4.29049399587058,0,0,0,29.1945569242208,21.5668063960502,21.1835071122059,16.9538984155973,12.9978496290611,15.9518363305651,21.2214302266091,32.9418531892928,0,0,0,0,0,0,0,0,0,0,0,0,1.116475108079,0.316379424718726,0,0.511795582622668,10.698474700848,0,0,2.87795932133304,0.274537029736055,1.41374882814824,0,0,0,13.6537446945085,0,0,0,0,0,0,0,0,0,2.62357900818653,0,0.30982349809975,0,1.86434757865267,4.71595396862982,0,0,28.0773154945893,36.2224382255892,96.3861861364916,237.255740326098,0,0,0,1.88287601553558,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403599414382095,0,0,0,0,0,0,0,0,0,0,0,0,10.1090643697607,0,0,0,0,0,0,0,0,0,0,0.422250816255987,5.77819165928102,5.24939439509181,0,0,0,0,0,0,0.511572370226872,12.4290691102536,0,0,0,0,0,0,0,3.62499787717397,0,0.508507300585533,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,8.31062791841008,0,0,0,0,1.91400695839152,0.0915975934018623,1.06606955203727,0,13.8142625627622,0,0,0,0,0,0,0,0,0,0,9.95261931078505,7.43043541828049,7.94339188413713,0,0,0,0.539209063845416,0.802577647298789,0,0,0,0,0.394584402849391,0,0,1.89559738885464,0,0,0,0,0,0,0,0,0,0,0,13.8034067911204,0,0,0,0,12.1236270610524,0,5.87549926029384,0,0,0.0633107959558787,0,0.160317640503067,3.62870091056899,0.599428828746391,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,5.78352179414492,10.8920136496179,6.64565229633883,2.87149209830726,3.99358000997982,12.8767814440971,6.91831518069805,0.671834724867263,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,9.2856234546954,0.0607495566580247,0,0.0788057072991982,0.314727528809989,0,0,0,7.14695326373367,11.9176554665778,0,0,0,0,0,0,0,0.113312091520126,0.146552233678082,0,0,0,0,0,0.320362237703084,0,0.414239055347196,1.48849806543585,0,0,0,3.26410682021684,4.0110383043632,3.36980134439808,1.63936315354902,0,0,0.122026264901963,0.1251909307065,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,38.6569939477004,0.233713309847224,9.43169964554443,8.90194124792919,32.4522593260822,57.8377294037748,0.228840068396924,3.02461847526478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,186.812966097693,54.9433128292469,48.4919263822924,5.04739592914604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0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| ||
|short_description=p3@LSP1 | |short_description=p3@LSP1 | ||
}} | }} |
Latest revision as of 04:10, 17 September 2015
Short description: | p3@LSP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LSP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000472974_5end |
EntrezGene: | LSP1 |
HGNC: | 6707 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 1.14e-12 | 9 |
extracellular matrix secreting cell | 7.46e-09 | 15 |
mesenchymal stem cell of adipose | 1.85e-08 | 8 |
GAG secreting cell | 1.39e-07 | 9 |
carbohydrate secreting cell | 1.39e-07 | 9 |
skeletal muscle myoblast | 3.86e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.92e-09 | 114 |
articulation | 3.79e-09 | 8 |
skeletal joint | 3.79e-09 | 8 |
articular system | 3.79e-09 | 8 |
adipose tissue | 6.97e-09 | 14 |
intervertebral cartilage | 3.86e-08 | 5 |
symphysis | 3.86e-08 | 5 |
nonsynovial joint | 3.86e-08 | 5 |
fibrous joint | 3.86e-08 | 5 |
cartilaginous joint | 3.86e-08 | 5 |
developing mesenchymal condensation | 3.86e-08 | 5 |
pre-cartilage condensation | 3.86e-08 | 5 |
cartilaginous condensation | 3.86e-08 | 5 |
cartilage element | 3.86e-08 | 5 |
post-cranial axial skeletal system | 3.86e-08 | 5 |
vertebral column | 3.86e-08 | 5 |
intervertebral disk | 3.86e-08 | 5 |
intervertebral joint | 3.86e-08 | 5 |
mesenchyme | 1.42e-07 | 160 |
entire embryonic mesenchyme | 1.42e-07 | 160 |
tissue | 5.26e-07 | 773 |