FFCP PHASE1:Hg19::chr11:5246889..5246962,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3043 | |EntrezGene=3043 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=4827 | |HGNC=4827 | ||
|TSSclassifier=strong | |||
|UniProt=P68871 | |UniProt=P68871 | ||
|association_with_transcript=0bp_to_M11428_5end | |association_with_transcript=0bp_to_M11428_5end | ||
|cluster_id=chr11:5246889..5246962,- | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_3_at_HBB_5end | |description=CAGE_peak_3_at_HBB_5end | ||
|id=chr11:5246889..5246962,- | |id=chr11:5246889..5246962,- | ||
|ontology_enrichment_celltype=CL:0002057!2.39e-13!42;CL:0000860!4.21e-12!45;CL:0000766!2.60e-08!76;CL:0000839!1.06e-07!70;CL:0000775!3.16e-07!3;CL:0002194!4.93e-07!63;CL:0000576!4.93e-07!63;CL:0000040!4.93e-07!63;CL:0000559!4.93e-07!63 | |ontology_enrichment_celltype=CL:0002057!2.39e-13!42;CL:0000860!4.21e-12!45;CL:0000766!2.60e-08!76;CL:0000839!1.06e-07!70;CL:0000775!3.16e-07!3;CL:0002194!4.93e-07!63;CL:0000576!4.93e-07!63;CL:0000040!4.93e-07!63;CL:0000559!4.93e-07!63 | ||
|ontology_enrichment_celltype_v019=CL:0000764;3.61e-15;2!CL:0000558;3.61e-15;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,3.61e-15,2;CL:0000765,3.61e-15,2;CL:0000050,3.61e-15,2;CL:0000038,3.61e-15,2;CL:0000558,3.61e-15,2;CL:0000547,3.61e-15,2;CL:0000549,3.61e-15,2;CL:0000550,3.61e-15,2;CL:0000552,3.61e-15,2 | |||
|ontology_enrichment_development_v019=UBERON:0000358;2.79e-08;1!UBERON:0010226;4.89e-08;1!UBERON:0005062;9.45e-08;4!UBERON:0007284;9.45e-08;4 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.88e-26!115;UBERON:0000178!1.37e-19!15;UBERON:0000179!1.37e-19!15;UBERON:0000463!1.37e-19!15;UBERON:0002390!1.93e-14!102;UBERON:0003061!1.93e-14!102;UBERON:0002193!2.56e-12!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.69e-46;15!UBERON:0000179;4.69e-46;15!UBERON:0000463;4.69e-46;15!UBERON:0002390;2.97e-19;32!UBERON:0002133;1.28e-14;2!UBERON:0002193;5.92e-11;42!UBERON:0003978;4.72e-10;3!UBERON:0000946;4.72e-10;3!UBERON:0004151;6.81e-10;3!UBERON:0002135;2.79e-08;1!UBERON:0002084;4.89e-08;1!UBERON:0002134;4.89e-08;1!UBERON:0002082;4.89e-08;1!UBERON:0005208;4.89e-08;1!UBERON:0004145;4.89e-08;1!UBERON:0005946;4.89e-08;1!UBERON:0005965;4.89e-08;1!UBERON:0002078;4.89e-08;1!UBERON:0007023;1.95e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.63e-46,15;UBERON:0000179,3.63e-46,15;UBERON:0000463,3.63e-46,15;UBERON:0007023,5.92e-23,114;UBERON:0002133,1.11e-14,2;UBERON:0003978,4.31e-10,3;UBERON:0009751,4.31e-10,3;UBERON:0000946,4.31e-10,3;UBERON:0002523,4.31e-10,3;UBERON:0005983,4.31e-10,3;UBERON:0002165,4.31e-10,3;UBERON:0002062,4.31e-10,3;UBERON:0007280,4.31e-10,3;UBERON:0004535,5.52e-10,109;UBERON:0004151,6.81e-10,3;UBERON:0001009,1.21e-09,112;UBERON:0002390,1.38e-09,98;UBERON:0003061,1.38e-09,98;UBERON:0002193,1.75e-08,108;UBERON:0002135,2.50e-08,1;UBERON:0002134,4.72e-08,1;UBERON:0005208,4.72e-08,1;UBERON:0005946,4.72e-08,1;UBERON:0005965,4.72e-08,1;UBERON:0002078,4.72e-08,1;UBERON:0002084,5.07e-08,1;UBERON:0002082,5.07e-08,1;UBERON:0010226,5.07e-08,1;UBERON:0003081,1.42e-07,203 | |||
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| ||
|short_description=p3@HBB | |short_description=p3@HBB | ||
}} | }} |
Latest revision as of 07:27, 18 September 2015
Short description: | p3@HBB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HBB_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 0bp_to_M11428_5end |
EntrezGene: | HBB |
HGNC: | 4827 |
UniProt: | P68871 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 3.61e-15 | 2 |
erythroblast | 3.61e-15 | 2 |
megakaryocyte-erythroid progenitor cell | 3.61e-15 | 2 |
erythroid progenitor cell | 3.61e-15 | 2 |
reticulocyte | 3.61e-15 | 2 |
proerythroblast | 3.61e-15 | 2 |
basophilic erythroblast | 3.61e-15 | 2 |
polychromatophilic erythroblast | 3.61e-15 | 2 |
orthochromatic erythroblast | 3.61e-15 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 3.63e-46 | 15 |
haemolymphatic fluid | 3.63e-46 | 15 |
organism substance | 3.63e-46 | 15 |
adult organism | 5.92e-23 | 114 |
atrioventricular valve | 1.11e-14 | 2 |
valve | 4.31e-10 | 3 |
cardiac mesenchyme | 4.31e-10 | 3 |
cardial valve | 4.31e-10 | 3 |
tunica intima | 4.31e-10 | 3 |
heart layer | 4.31e-10 | 3 |
endocardium | 4.31e-10 | 3 |
endocardial cushion | 4.31e-10 | 3 |
presumptive endocardium | 4.31e-10 | 3 |
cardiovascular system | 5.52e-10 | 109 |
cardiac chamber | 6.81e-10 | 3 |
circulatory system | 1.21e-09 | 112 |
hematopoietic system | 1.38e-09 | 98 |
blood island | 1.38e-09 | 98 |
hemolymphoid system | 1.75e-08 | 108 |
mitral valve | 2.50e-08 | 1 |
tricuspid valve | 4.72e-08 | 1 |
right atrium valve | 4.72e-08 | 1 |
outflow tract of atrium | 4.72e-08 | 1 |
outflow part of right atrium | 4.72e-08 | 1 |
right cardiac atrium | 4.72e-08 | 1 |
heart left ventricle | 5.07e-08 | 1 |
cardiac ventricle | 5.07e-08 | 1 |
future cardiac ventricle | 5.07e-08 | 1 |
lateral plate mesoderm | 1.42e-07 | 203 |