FFCP PHASE1:Hg19::chr12:18395914..18395935,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:18395914..18395935,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_at_chr12:18395914..18395935,+ | |description=CAGE_peak_at_chr12:18395914..18395935,+ | ||
|id=chr12:18395914..18395935,+ | |id=chr12:18395914..18395935,+ | ||
|ontology_enrichment_celltype=CL:0000181!9.69e-13!12;CL:0000417!9.69e-13!12;CL:0000668!9.69e-13!12;CL:0000414!9.69e-13!12;CL:0000412!9.69e-13!12;CL:0000182!9.69e-13!12;CL:0000319!3.01e-10!1;CL:0000946!3.96e-10!1;CL:0000786!3.96e-10!1;CL:0000980!3.96e-10!1 | |ontology_enrichment_celltype=CL:0000181!9.69e-13!12;CL:0000417!9.69e-13!12;CL:0000668!9.69e-13!12;CL:0000414!9.69e-13!12;CL:0000412!9.69e-13!12;CL:0000182!9.69e-13!12;CL:0000319!3.01e-10!1;CL:0000946!3.96e-10!1;CL:0000786!3.96e-10!1;CL:0000980!3.96e-10!1 | ||
|ontology_enrichment_celltype_v019=CL:0000182;6.97e-21;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,6.62e-21,12 | |||
|ontology_enrichment_development_v019=UBERON:0006242;2.08e-16;1!UBERON:0004161;4.75e-13;11!UBERON:0009497;3.89e-11;13 | |||
|ontology_enrichment_disease=DOID:3030!3.01e-10!1 | |ontology_enrichment_disease=DOID:3030!3.01e-10!1 | ||
|ontology_enrichment_disease_v019=DOID:3493;5.71e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,5.94e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0009497!1.62e-22!25;UBERON:0000015!1.62e-22!25;UBERON:0002423!1.62e-22!25;UBERON:0006235!1.62e-22!25;UBERON:0004161!1.62e-22!25;UBERON:0008835!1.01e-14!22;UBERON:0003894!1.01e-14!22;UBERON:0009854!4.59e-14!23;UBERON:0002110!4.84e-13!3;UBERON:0006242!4.84e-13!3;UBERON:0007499!6.62e-13!25;UBERON:0009856!2.16e-12!26;UBERON:0005172!2.97e-12!55;UBERON:0005173!2.97e-12!55;UBERON:0002107!3.25e-12!19;UBERON:0006925!3.25e-12!19;UBERON:0008836!3.25e-12!19;UBERON:0002294!4.29e-12!7;UBERON:0001173!4.29e-12!7;UBERON:0004912!4.29e-12!7;UBERON:0002417!6.34e-11!61;UBERON:0000916!6.34e-11!61;UBERON:0001301!2.28e-10!1;UBERON:0003929!6.78e-10!54;UBERON:0001007!4.10e-09!155;UBERON:0001555!4.10e-09!155;UBERON:0007026!4.10e-09!155;UBERON:0005057!7.00e-09!26;UBERON:0005177!1.42e-08!107;UBERON:0004119!3.61e-08!169;UBERON:0000925!3.61e-08!169;UBERON:0006595!3.61e-08!169;UBERON:0004921!3.70e-08!129;UBERON:0004185!3.70e-08!129;UBERON:0002365!2.04e-07!31;UBERON:0002330!2.04e-07!31;UBERON:0000466!5.16e-07!126;UBERON:0000949!5.28e-07!45;UBERON:0000077!9.53e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;7.04e-22;25!UBERON:0002107;2.57e-20;19!UBERON:0006925;2.57e-20;19!UBERON:0002365;6.79e-13;31!UBERON:0002330;6.79e-13;31!UBERON:0002368;2.20e-10;33!UBERON:0000949;5.08e-09;43!UBERON:0005172;8.75e-08;52!UBERON:0005173;8.75e-08;52!UBERON:0001007;3.35e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009497,7.04e-22,25;UBERON:0000015,7.04e-22,25;UBERON:0002423,7.04e-22,25;UBERON:0006235,7.04e-22,25;UBERON:0004161,7.04e-22,25;UBERON:0002107,2.52e-20,19;UBERON:0006925,2.52e-20,19;UBERON:0008836,2.52e-20,19;UBERON:0008835,1.44e-17,22;UBERON:0003894,1.44e-17,22;UBERON:0009854,8.29e-17,23;UBERON:0007499,1.81e-15,25;UBERON:0009856,7.07e-15,26;UBERON:0002365,1.74e-12,31;UBERON:0002330,1.74e-12,31;UBERON:0000949,4.55e-12,45;UBERON:0002368,4.64e-11,35;UBERON:0003929,5.04e-10,54;UBERON:0005172,5.04e-10,54;UBERON:0005173,5.04e-10,54;UBERON:0002417,5.39e-09,60;UBERON:0000916,5.39e-09,60;UBERON:0001007,1.16e-07,145;UBERON:0001555,1.16e-07,145;UBERON:0007026,1.16e-07,145;UBERON:0004921,1.39e-07,118;UBERON:0005177,5.79e-07,101;UBERON:0004119,7.31e-07,160;UBERON:0000925,7.31e-07,160;UBERON:0006595,7.31e-07,160 | |||
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|short_description=p@chr12:18395914..18395935,+ | |short_description=p@chr12:18395914..18395935,+ | ||
}} | }} |
Latest revision as of 07:20, 24 July 2015
Short description: | p@chr12:18395914..18395935, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:18395914..18395935, + |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 6.62e-21 | 12 |
Ontology term | p-value | n |
---|---|---|
epithelium of foregut-midgut junction | 7.04e-22 | 25 |
anatomical boundary | 7.04e-22 | 25 |
hepatobiliary system | 7.04e-22 | 25 |
foregut-midgut junction | 7.04e-22 | 25 |
septum transversum | 7.04e-22 | 25 |
liver | 2.52e-20 | 19 |
digestive gland | 2.52e-20 | 19 |
liver bud | 2.52e-20 | 19 |
hepatic diverticulum | 1.44e-17 | 22 |
liver primordium | 1.44e-17 | 22 |
digestive tract diverticulum | 8.29e-17 | 23 |
epithelial sac | 1.81e-15 | 25 |
sac | 7.07e-15 | 26 |
exocrine gland | 1.74e-12 | 31 |
exocrine system | 1.74e-12 | 31 |
endocrine system | 4.55e-12 | 45 |
endocrine gland | 4.64e-11 | 35 |
gut epithelium | 5.04e-10 | 54 |
abdomen element | 5.04e-10 | 54 |
abdominal segment element | 5.04e-10 | 54 |
abdominal segment of trunk | 5.39e-09 | 60 |
abdomen | 5.39e-09 | 60 |
digestive system | 1.16e-07 | 145 |
digestive tract | 1.16e-07 | 145 |
primitive gut | 1.16e-07 | 145 |
subdivision of digestive tract | 1.39e-07 | 118 |
trunk region element | 5.79e-07 | 101 |
endoderm-derived structure | 7.31e-07 | 160 |
endoderm | 7.31e-07 | 160 |
presumptive endoderm | 7.31e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 5.94e-09 | 2 |