FFCP PHASE1:Hg19::chr13:109924548..109924559,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:109924548..109924559,+ | |||
|description=CAGE_peak_at_chr13:109924548..109924559,+ | |description=CAGE_peak_at_chr13:109924548..109924559,+ | ||
|id=chr13:109924548..109924559,+ | |id=chr13:109924548..109924559,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.16e-29!254;CL:0002076!9.26e-13!43;CL:0000220!1.44e-12!246;CL:0002321!1.48e-12!248;CL:0000548!2.17e-10!679;CL:0000004!2.17e-10!679;CL:0000255!2.17e-10!679;CL:0000012!5.04e-10!682;CL:0000076!9.14e-10!62;CL:0000223!1.96e-09!59;CL:0000077!2.62e-09!19;CL:0000063!5.35e-08!578;CL:0002368!3.17e-07!13;CL:0002251!8.70e-07!21;CL:0002159!8.89e-07!13 | |ontology_enrichment_celltype=CL:0000066!1.16e-29!254;CL:0002076!9.26e-13!43;CL:0000220!1.44e-12!246;CL:0002321!1.48e-12!248;CL:0000548!2.17e-10!679;CL:0000004!2.17e-10!679;CL:0000255!2.17e-10!679;CL:0000012!5.04e-10!682;CL:0000076!9.14e-10!62;CL:0000223!1.96e-09!59;CL:0000077!2.62e-09!19;CL:0000063!5.35e-08!578;CL:0002368!3.17e-07!13;CL:0002251!8.70e-07!21;CL:0002159!8.89e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002159;5.85e-11;14!CL:0000077;7.10e-10;19!CL:0002076;2.11e-07;42!CL:0000362;9.67e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.78e-23,253;CL:0000076,6.08e-13,63;CL:0002159,5.38e-11,14;CL:0000077,4.34e-10,19;CL:0002076,7.51e-10,42;CL:0002321,1.26e-08,250;CL:0000223,5.46e-07,58;CL:0000362,8.07e-07,9;CL:0002077,8.86e-07,34 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.01e-11!106;DOID:0050687!2.54e-09!143 | |ontology_enrichment_disease=DOID:305!3.01e-11!106;DOID:0050687!2.54e-09!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.25e-09,106;DOID:0050687,7.18e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.74e-14!169;UBERON:0000925!2.74e-14!169;UBERON:0006595!2.74e-14!169;UBERON:0000064!1.08e-12!219;UBERON:0000062!1.40e-11!511;UBERON:0001007!2.28e-11!155;UBERON:0001555!2.28e-11!155;UBERON:0007026!2.28e-11!155;UBERON:0004923!2.65e-11!57;UBERON:0000077!2.34e-10!130;UBERON:0000063!4.06e-10!97;UBERON:0003104!4.80e-10!238;UBERON:0009142!4.80e-10!238;UBERON:0001004!1.03e-09!72;UBERON:0000475!1.09e-09!365;UBERON:0008947!1.15e-09!38;UBERON:0003258!1.15e-09!38;UBERON:0000065!7.42e-09!53;UBERON:0003102!8.21e-09!95;UBERON:0004921!3.34e-08!129;UBERON:0004185!3.34e-08!129;UBERON:0000072!3.76e-08!46;UBERON:0000481!8.68e-08!347;UBERON:0005631!9.66e-08!14;UBERON:0000158!9.66e-08!14;UBERON:0002100!1.08e-07!216;UBERON:0005178!1.37e-07!34;UBERON:0002224!1.37e-07!34;UBERON:0001041!1.56e-07!98;UBERON:0002097!1.99e-07!40;UBERON:0000467!2.04e-07!625;UBERON:0000466!2.15e-07!126;UBERON:0000480!2.58e-07!626;UBERON:0000464!3.15e-07!104;UBERON:0005181!3.69e-07!35;UBERON:0001737!7.50e-07!9;UBERON:0000468!7.54e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.54e-09;9!UBERON:0001557;3.54e-09;9!UBERON:0010371;7.10e-08;31!UBERON:0000058;8.33e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.75e-12,160;UBERON:0000925,6.75e-12,160;UBERON:0006595,6.75e-12,160;UBERON:0001007,4.39e-11,145;UBERON:0001555,4.39e-11,145;UBERON:0007026,4.39e-11,145;UBERON:0003102,4.95e-10,99;UBERON:0004923,2.05e-09,66;UBERON:0001737,2.54e-09,9;UBERON:0005631,1.32e-08,14;UBERON:0000158,1.32e-08,14;UBERON:0004921,4.56e-08,118;UBERON:0001041,4.69e-08,87;UBERON:0005085,1.81e-07,31;UBERON:0002097,2.42e-07,41;UBERON:0008947,3.32e-07,38;UBERON:0003258,3.32e-07,38;UBERON:0001004,5.56e-07,74;UBERON:0000033,8.44e-07,56 | |||
|phase1_expression=1.81678379270557,5.35251309727458,5.21531295155093,4.00293193412522,0.893922188854576,0,0,0,0,1.47440361900905,1.39560233594486,2.62129646556207,2.37390280405608,0,0,0,0,0,0,0.369363174230364,0.408001382488506,0.626909442956176,1.71741592278634,6.56997240349844,5.52387614217132,0,0,0,0,0,0.154816123316076,2.75826367343678,0.6024118375565,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.361439152384566,0,0,0,0,3.21418378357831,5.32150553910154,2.72287835648691,0.0654895377488563,1.09288586487763,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20848795132744,0,0.24406205754817,0,0,0.17859945656816,0.22452937262617,0,0,0,0,0,0,6.54141078213801,0,0,1.19168262731897,0,0,0,0,0,0,0.538842688278752,0,0.151357427644931,0,0.70296429550139,0,0,0.448346041655403,1.996386476944,2.75184005425824,4.07307339436521,2.24569588380383,0,0.516628905878827,0,0,1.82032272387605,1.43723628363248,1.5150250255866,1.25118519871964,5.26421819419948,0.438977620880838,0,0,0,15.0687293978644,5.12537733164562,0.847727604638247,0,0.721367704669072,2.06112432036503,1.67505170698431,0.337552664482532,0.0974370051611986,0.252433774244115,1.10459878370759,0,1.77504796258307,0.604512589365842,1.18692414617341,0.57978255948989,9.81886034127005,0,0.243947412259191,0,0,0.207322110030741,0,0,0,3.85944562915731,5.52539685409922,45.5080569471339,35.3720946018097,3.54920400119532,2.86593973132773,2.16909926895134,2.75734931830985,2.17879444092406,1.89816495288877,2.02246962240247,1.37355025587742,1.92373578473195,0,0,0.4115740113314,1.47008711385542,0,0,0,0,2.09080345523293,2.23038153388083,13.4992851052609,1.1240175325762,2.81481122752566,4.53683381276795,0,0,0,0,1.40890433082986,0,0,0,0,0,0,0,0,2.81201501960331,2.01578553838631,2.83550194484773,1.70161193135412,1.45316969256981,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.448524337381443,0,0.2933531432838,0,0,0,0.26593811658487,0,0,0,0,6.86294369559108,1.08524321078289,0,0,3.909311436168,0,0,0,0.099972991182057,0,0,0,0,0,0,8.54209709338717,2.26023954805422,5.90901178691655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.630809660135739,0.234282829985426,0,0,0,0,0,0,0.195801157462741,0,0,0,0,12.7313580007429,0,3.62868351995616,0.248107807818777,0.61384789315225,0,0.768834895534206,0.511707249066704,0,1.48418066444991,0,0.177561725313127,0,0,0,0.483437798366489,2.40607764363942,2.5782676902051,0.114814448164607,0.182091168006717,0,0.451199612907412,0.770153371044148,1.56869953835371,0,0.105551628892876,0,0,0.647747748306418,0,1.08378575017541,0.501689773854853,0.254876273045038,0,1.56712328305525,0,0,0.512900250232778,2.95213181129735,1.30151357865721,0.618246069886334,0,0,2.87132768998086,2.60024098414608,1.6068392984416,0,0.616194468458578,0.307007349452259,0.827019434907183,0.537101224341368,0,0.426133137080504,0.0890320356467374,1.4875642382488,0.576570202095319,4.97689578728878,0.10115778085555,0,0,0,0,0,0,0,0,0.744316738719335,0.949138274156178,5.3376454298671,0.511795582622668,0,0,0,5.39617372749944,5.21620356498504,4.00562167975334,0,0,0,4.38870365180631,0,0,0,0,0,0,0.66343897524122,0,1.73632660280006,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0.699869440489966,2.50177493086331,2.01090682660736,1.08890984861323,1.03558180854457,0,0,0.886860307073351,0.918893600827838,0,0,0,0,0,0,0,0,0,0,1.96032172784825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.94176834799221,0,2.84136146806413,7.87856799634377,3.8605408508243,5.83605333988541,0,0,0,0,0,0,0,0,3.27259784006895,0,0,1.52776196950456,2.32727527078292,0,0,0,26.6728776347129,0,0,0,0,0,0,0,0.254253650292766,2.36387681767936,0,0,0,0,0,0,0,0,0,2.50558466093677,0.975966209950223,0,9.1153644677601,0,0,0.108647371922008,7.97502899329799,0.732780747214898,5.86338253620498,0,0,0,0,0,0,0,0,0.210998064528027,0.489698424477443,0.282706142867882,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0.586993856796269,2.67058417487502,1.57833761139756,0,0,0,0,0,0,0,0,0,0,0,0.347119476670262,3.23374911467446,1.30588809870604,5.94070672022902,4.29965081179041,10.0626584540649,6.50494922067051,6.65135202130995,0.193978032976839,0,0,0,0,0,3.71547627196126,0.64127056201227,0,1.19885765749278,0,9.506537481771,0,0.432164393964449,1.49103042678519,0,2.17446729717782,2.30126261887133,0,0,0,0,0,0,0,0.837847203816763,0,0,0.399358000997982,0,0,0.134366944973453,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0.415440338029185,4.04953004792701,5.41661368190565,0,0.335434687599266,0,0,0.105600336519406,8.7850796273094,0.767660789277781,0,0,0,0,0,0,0,0,2.04465626142506,0,0,0,0,0,0.684347351537318,0.704815022316672,0.106787412567695,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04349012362347,0,0.380805212168795,0,1.09109195521536,0.107410557042488,0,0.398095888698616,13.2009162338841,0,0,1.2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| ||
|short_description=p@chr13:109924548..109924559,+ | |short_description=p@chr13:109924548..109924559,+ | ||
}} | }} |
Latest revision as of 14:26, 24 July 2015
Short description: | p@chr13:109924548..109924559, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:109924548..109924559, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.78e-23 | 253 |
squamous epithelial cell | 6.08e-13 | 63 |
general ecto-epithelial cell | 5.38e-11 | 14 |
mesothelial cell | 4.34e-10 | 19 |
endo-epithelial cell | 7.51e-10 | 42 |
embryonic cell | 1.26e-08 | 250 |
endodermal cell | 5.46e-07 | 58 |
epidermal cell | 8.07e-07 | 9 |
ecto-epithelial cell | 8.86e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 6.75e-12 | 160 |
endoderm | 6.75e-12 | 160 |
presumptive endoderm | 6.75e-12 | 160 |
digestive system | 4.39e-11 | 145 |
digestive tract | 4.39e-11 | 145 |
primitive gut | 4.39e-11 | 145 |
surface structure | 4.95e-10 | 99 |
organ component layer | 2.05e-09 | 66 |
larynx | 2.54e-09 | 9 |
extraembryonic membrane | 1.32e-08 | 14 |
membranous layer | 1.32e-08 | 14 |
subdivision of digestive tract | 4.56e-08 | 118 |
foregut | 4.69e-08 | 87 |
ectodermal placode | 1.81e-07 | 31 |
skin of body | 2.42e-07 | 41 |
respiratory primordium | 3.32e-07 | 38 |
endoderm of foregut | 3.32e-07 | 38 |
respiratory system | 5.56e-07 | 74 |
head | 8.44e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.25e-09 | 106 |
cell type cancer | 7.18e-07 | 143 |