FFCP PHASE1:Hg19::chr13:110802195..110802206,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:110802195..110802206,- | |||
|description=CAGE_peak_at_chr13:110802195..110802206,- | |description=CAGE_peak_at_chr13:110802195..110802206,- | ||
|id=chr13:110802195..110802206,- | |id=chr13:110802195..110802206,- | ||
|ontology_enrichment_celltype=CL:0000222!3.95e-08!119;CL:0005020!3.14e-07!6;CL:0002138!3.14e-07!6;CL:0005022!3.14e-07!6 | |ontology_enrichment_celltype=CL:0000222!3.95e-08!119;CL:0005020!3.14e-07!6;CL:0002138!3.14e-07!6;CL:0005022!3.14e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002138;5.07e-12;6!CL:0000669;2.75e-10;4!CL:0002549;1.33e-09;2!CL:0002575;1.33e-09;2!CL:0002615;2.24e-07;3!CL:0002541;6.44e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,8.93e-12,6;CL:0002138,8.93e-12,6;CL:0005022,8.93e-12,6;CL:0000669,4.86e-10,4;CL:0002575,1.46e-09,2;CL:0002549,1.98e-09,2;CL:0002615,2.22e-07,3;CL:0002144,6.37e-07,3;CL:0002541,6.96e-07,3 | |||
|ontology_enrichment_development_v019=CL:0005022;5.07e-12;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1192;6.44e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:1192,3.95e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0002049!6.69e-14!79;UBERON:0007798!6.69e-14!79;UBERON:0004535!1.62e-12!110;UBERON:0001009!1.74e-12!113;UBERON:0000055!1.11e-10!69;UBERON:0003914!4.78e-10!118;UBERON:0004872!2.56e-09!84;UBERON:0001981!2.65e-07!60;UBERON:0007500!2.65e-07!60;UBERON:0004537!2.65e-07!60;UBERON:0006965!2.65e-07!60;UBERON:0000948!4.13e-07!24;UBERON:0005498!4.13e-07!24;UBERON:0004140!4.13e-07!24;UBERON:0009881!4.13e-07!24;UBERON:0004141!4.13e-07!24;UBERON:0003084!4.13e-07!24;UBERON:0007005!4.13e-07!24;UBERON:0004139!4.13e-07!24;UBERON:0004291!4.13e-07!24;UBERON:0001473!5.79e-07!8;UBERON:0004536!5.79e-07!8;UBERON:0006558!5.79e-07!8;UBERON:0007100!8.31e-07!27 | |ontology_enrichment_uberon=UBERON:0002049!6.69e-14!79;UBERON:0007798!6.69e-14!79;UBERON:0004535!1.62e-12!110;UBERON:0001009!1.74e-12!113;UBERON:0000055!1.11e-10!69;UBERON:0003914!4.78e-10!118;UBERON:0004872!2.56e-09!84;UBERON:0001981!2.65e-07!60;UBERON:0007500!2.65e-07!60;UBERON:0004537!2.65e-07!60;UBERON:0006965!2.65e-07!60;UBERON:0000948!4.13e-07!24;UBERON:0005498!4.13e-07!24;UBERON:0004140!4.13e-07!24;UBERON:0009881!4.13e-07!24;UBERON:0004141!4.13e-07!24;UBERON:0003084!4.13e-07!24;UBERON:0007005!4.13e-07!24;UBERON:0004139!4.13e-07!24;UBERON:0004291!4.13e-07!24;UBERON:0001473!5.79e-07!8;UBERON:0004536!5.79e-07!8;UBERON:0006558!5.79e-07!8;UBERON:0007100!8.31e-07!27 | ||
|ontology_enrichment_uberon_v019=UBERON:0001473;1.33e-13;8!UBERON:0004536;1.33e-13;8!UBERON:0006558;1.33e-13;8!UBERON:0002465;7.88e-11;10!UBERON:0005629;1.33e-09;2!UBERON:0005358;1.33e-09;2!UBERON:0001886;1.33e-09;2!UBERON:0004086;1.33e-09;2!UBERON:0005282;1.33e-09;2!UBERON:0005281;1.33e-09;2!UBERON:0003688;1.64e-07;6!UBERON:0002358;1.64e-07;6!UBERON:0003684;1.64e-07;6!UBERON:0001178;1.64e-07;6!UBERON:0003124;6.44e-07;3!UBERON:0000920;6.44e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,2.11e-13,8;UBERON:0004536,2.11e-13,8;UBERON:0006558,2.11e-13,8;UBERON:0002465,1.13e-10,10;UBERON:0005629,1.98e-09,2;UBERON:0005358,1.98e-09,2;UBERON:0001886,1.98e-09,2;UBERON:0004086,1.98e-09,2;UBERON:0005282,1.98e-09,2;UBERON:0005281,1.98e-09,2;UBERON:0003688,1.24e-07,6;UBERON:0002358,1.24e-07,6;UBERON:0003684,1.24e-07,6;UBERON:0001178,1.24e-07,6;UBERON:0010523,6.37e-07,3;UBERON:0001915,6.37e-07,3;UBERON:0001982,6.37e-07,3;UBERON:0000920,6.96e-07,3 | |||
|phase1_expression=0.726713517082227,0.642301571672949,0.845726424575827,4.00293193412522,3.5756887554183,3.48935409640147,2.53299878168311,0,0.522371256399677,0.491467873003018,0,0.218441372130172,0.263766978228454,0,0,0,0.602694528023977,0.730310090387373,0,0,0.204000691244253,0,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0.50133791063589,0.434539556882471,0,0,0.189069634328136,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0.838998872419812,0.550236083880135,0.208994966536811,1.03366703667732,1.06729878806013,0.66944122552934,1.61131726843659,0,1.70843440283719,0,0,0.267899184852239,0.22452937262617,0,0,0,0.183201743930407,0,0,0,2.48485975847659,0.759783069987479,0.132409180813219,0.860509862246441,0.354668382198357,0.560677600142307,2.1349799145941,4.19334832309172,0,0.404132016209064,0.653847612453835,1.36221684880438,1.15235184896,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,1.43723628363248,0,0,0,0,0,0,0.907457465280168,0.179389635688862,0.427114777637135,0.423863802319124,0.300091096084402,0,0.257640540045629,0,0,0.389748020644795,0.252433774244115,0,0,0.355009592516614,0.10075209822764,0.339121184620975,0.193260853163297,0,0,0,0.132529768321485,0.232387885739037,0.518305275076852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0.117408694235822,0.577465791044295,3.24089858803628,1.52203321787679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.224262168690721,0.43596006883328,0.22001485746285,0,3.57656445851882,3.381211010224,2.12750493267896,0,0,0,0,0.285955987316295,0.542621605391443,0,0,0.710783897485092,0.791951872933429,0.301439377059586,0,0.199945982364114,0,0,0,0.958499421966331,2.29723871668228,0,0.434343920002738,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.415941723061614,0.356857977594324,0.315404830067869,0,0,0,1.03473071292505,0,0,0,1.76221041716467,1.02943027143257,0,0,0,0,0,0,0.248107807818777,0.61384789315225,0,0.256278298511402,0,1.76939313257968,0,0,0.532685175939381,0,0,0,0,0.200506470303285,0,0.229628896329213,0.182091168006717,0.131124414959424,0,0.15403067420883,0,2.92278449306521,0.422206515571503,0,0.680374821106063,0.863663664408557,1.54227252690289,0.270946437543853,1.00337954770971,0,0,0.223874754722178,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0.275673144969061,0,0,0.0852266274161009,0.0890320356467374,0,0,0.127612712494584,0,0,0.31481234683064,0,0,0.532306030317022,0,0,0,0.744316738719335,0.949138274156178,0.190630193923825,0,0,0,0,0.179872457583315,0.274537029736055,0.235624804691373,0.404364963146632,0,0.421258456238981,0.48763373908959,0,1.05650146756755,0.136499911407986,0,0,0,0.66343897524122,0,0,0,0.202910376962704,0,0,0.143411352204052,0,0.7133421029625,0,0,0,0,0,0,0,0,0.376575203107117,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0.597743964753209,0,0,0,0,0.933118762985422,0,0,0,0.295930216910801,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,1.37396390102793,2.13213910407454,0,0,0,0,0,0,0,0,0.210998064528027,0.326465616318295,0,0,0,0,1.22206028986725,0,0,0,0,1.60515529459758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0.225980740780532,0.274083849293502,0,0,0,0,0.213452994739353,0,0,0,0,0.288109595976299,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0.279282401272254,0.458320848023367,0.717873024576814,0.599037001496973,0,0,0.134366944973453,1.80149941771202,0,0,0,0,0,0,0,0,0.321506296930038,0.137539436597234,0,0,0,0,0,0,0.262272940674991,0,0,0,1.42939065274673,0,0,0,0.864221491201268,0.326587360109409,0,0,0.170388021785422,0,0.146552233678082,0,0,0,0,0,0.213574825135389,0.157204305099666,0.414239055347196,0,0,0,0,0,0.2506898940227,0,0,0,0,0.244052529803926,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0.147855149989634,0.63718706865481,0,0,0,1.59505028734797,0,0.150257608997218,0,0.813741466409323,1.27294061441792,0.107410557042488,0,1.19428766609585,0,0,0.336749488765919,0,0,0,0.521988583930423,0,0,0,0.537266523244462,1.23520578864389,0,0.176689145945881,0.192914038270915,0,1.53744911152768,0,0,0,0,0,0,0.655219697692825,0.737318726261158,0,0.19998739585493,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0.212574920101683,0,0,1.90802610392051,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,1.48863353516788,0,0,0,0,0,0,0.266107110487916,0,0,0.0679697329768317,0,0,0,0.156986185701028,0,0,1.82631744101899,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0.31020638566432,0,0.111855431797792,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0,0.437119121007915,0,0.490296643507811,0,0,0,0,1.0195626881269,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0.743990036333503,0,0,0.252332849670158,0,0.126698501011437,0,0,0,0,0.227336094654718,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0.112131862580613,0,0.404234377916439,0,0.342233301085281,0,0.0717222053926763,0.665320713092027,0,0.106727345877715,0,0,0,0.122241444182866,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0.726713517082227,0.642301571672949,0.845726424575827,4.00293193412522,3.5756887554183,3.48935409640147,2.53299878168311,0,0.522371256399677,0.491467873003018,0,0.218441372130172,0.263766978228454,0,0,0,0.602694528023977,0.730310090387373,0,0,0.204000691244253,0,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0.50133791063589,0.434539556882471,0,0,0.189069634328136,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0.838998872419812,0.550236083880135,0.208994966536811,1.03366703667732,1.06729878806013,0.66944122552934,1.61131726843659,0,1.70843440283719,0,0,0.267899184852239,0.22452937262617,0,0,0,0.183201743930407,0,0,0,2.48485975847659,0.759783069987479,0.132409180813219,0.860509862246441,0.354668382198357,0.560677600142307,2.1349799145941,4.19334832309172,0,0.404132016209064,0.653847612453835,1.36221684880438,1.15235184896,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,1.43723628363248,0,0,0,0,0,0,0.907457465280168,0.179389635688862,0.427114777637135,0.423863802319124,0.300091096084402,0,0.257640540045629,0,0,0.389748020644795,0.252433774244115,0,0,0.355009592516614,0.10075209822764,0.339121184620975,0.193260853163297,0,0,0,0.132529768321485,0.232387885739037,0.518305275076852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0.117408694235822,0.577465791044295,3.24089858803628,1.52203321787679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.224262168690721,0.43596006883328,0.22001485746285,0,3.57656445851882,3.381211010224,2.12750493267896,0,0,0,0,0.285955987316295,0.542621605391443,0,0,0.710783897485092,0.791951872933429,0.301439377059586,0,0.199945982364114,0,0,0,0.958499421966331,2.29723871668228,0,0.434343920002738,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.415941723061614,0.356857977594324,0.315404830067869,0,0,0,1.03473071292505,0,0,0,1.76221041716467,1.02943027143257,0,0,0,0,0,0,0.248107807818777,0.61384789315225,0,0.256278298511402,0,1.76939313257968,0,0,0.532685175939381,0,0,0,0,0.200506470303285,0,0.229628896329213,0.182091168006717,0.131124414959424,0,0.15403067420883,0,2.92278449306521,0.422206515571503,0,0.680374821106063,0.863663664408557,1.54227252690289,0.270946437543853,1.00337954770971,0,0,0.223874754722178,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0.275673144969061,0,0,0.0852266274161009,0.0890320356467374,0,0,0.127612712494584,0,0,0.31481234683064,0,0,0.532306030317022,0,0,0,0.744316738719335,0.949138274156178,0.190630193923825,0,0,0,0,0.179872457583315,0.274537029736055,0.235624804691373,0.404364963146632,0,0.421258456238981,0.48763373908959,0,1.05650146756755,0.136499911407986,0,0,0,0.66343897524122,0,0,0,0.202910376962704,0,0,0.143411352204052,0,0.7133421029625,0,0,0,0,0,0,0,0,0.376575203107117,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0.597743964753209,0,0,0,0,0.933118762985422,0,0,0,0.295930216910801,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,1.37396390102793,2.13213910407454,0,0,0,0,0,0,0,0,0.210998064528027,0.326465616318295,0,0,0,0,1.22206028986725,0,0,0,0,1.60515529459758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0.225980740780532,0.274083849293502,0,0,0,0,0.213452994739353,0,0,0,0,0.288109595976299,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0.279282401272254,0.458320848023367,0.717873024576814,0.599037001496973,0,0,0.134366944973453,1.80149941771202,0,0,0,0,0,0,0,0,0.321506296930038,0.137539436597234,0,0,0,0,0,0,0.262272940674991,0,0,0,1.42939065274673,0,0,0,0.864221491201268,0.326587360109409,0,0,0.170388021785422,0,0.146552233678082,0,0,0,0,0,0.213574825135389,0.157204305099666,0.414239055347196,0,0,0,0,0,0.2506898940227,0,0,0,0,0.244052529803926,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0.147855149989634,0.63718706865481,0,0,0,1.59505028734797,0,0.150257608997218,0,0.813741466409323,1.27294061441792,0.107410557042488,0,1.19428766609585,0,0,0.336749488765919,0,0,0,0.521988583930423,0,0,0,0.537266523244462,1.23520578864389,0,0.176689145945881,0.192914038270915,0,1.53744911152768,0,0,0,0,0,0,0.655219697692825,0.737318726261158,0,0.19998739585493,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0.212574920101683,0,0,1.90802610392051,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,1.48863353516788,0,0,0,0,0,0,0.266107110487916,0,0,0.0679697329768317,0,0,0,0.156986185701028,0,0,1.82631744101899,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0.31020638566432,0,0.111855431797792,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0,0.437119121007915,0,0.490296643507811,0,0,0,0,1.0195626881269,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0.743990036333503,0,0,0.252332849670158,0,0.126698501011437,0,0,0,0,0.227336094654718,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0.112131862580613,0,0.404234377916439,0,0.342233301085281,0,0.0717222053926763,0.665320713092027,0,0.106727345877715,0,0,0,0.122241444182866,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p@chr13:110802195..110802206,- | |short_description=p@chr13:110802195..110802206,- | ||
}} | }} |
Latest revision as of 14:29, 24 July 2015
Short description: | p@chr13:110802195..110802206, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:110802195..110802206, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 8.93e-12 | 6 |
endothelial cell of lymphatic vessel | 8.93e-12 | 6 |
vascular lymphangioblast | 8.93e-12 | 6 |
pericyte cell | 4.86e-10 | 4 |
central nervous system pericyte | 1.46e-09 | 2 |
fibroblast of choroid plexus | 1.98e-09 | 2 |
adipocyte of omentum tissue | 2.22e-07 | 3 |
capillary endothelial cell | 6.37e-07 | 3 |
chorionic membrane mesenchymal stem cell | 6.96e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 2.11e-13 | 8 |
lymph vasculature | 2.11e-13 | 8 |
lymphatic part of lymphoid system | 2.11e-13 | 8 |
lymphoid system | 1.13e-10 | 10 |
vascular plexus | 1.98e-09 | 2 |
ventricle of nervous system | 1.98e-09 | 2 |
choroid plexus | 1.98e-09 | 2 |
brain ventricle | 1.98e-09 | 2 |
ventricular system of brain | 1.98e-09 | 2 |
ventricular system of central nervous system | 1.98e-09 | 2 |
omentum | 1.24e-07 | 6 |
peritoneum | 1.24e-07 | 6 |
abdominal cavity | 1.24e-07 | 6 |
visceral peritoneum | 1.24e-07 | 6 |
microcirculatory vessel | 6.37e-07 | 3 |
endothelium of capillary | 6.37e-07 | 3 |
capillary | 6.37e-07 | 3 |
egg chorion | 6.96e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
peripheral nervous system neoplasm | 3.95e-07 | 3 |