FFCP PHASE1:Hg19::chr14:51955690..51955699,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=122786 | |EntrezGene=122786 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19839 | |HGNC=19839 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-118bp_to_ENST00000556137_5end | |association_with_transcript=-118bp_to_ENST00000556137_5end | ||
|cluster_id=chr14:51955690..51955699,+ | |||
|coexpression_cluster_id=C362 | |||
|description=CAGE_peak_28_at_FRMD6_5end | |description=CAGE_peak_28_at_FRMD6_5end | ||
|id=chr14:51955690..51955699,+ | |id=chr14:51955690..51955699,+ | ||
|ontology_enrichment_celltype=CL:0002076!3.86e-22!43;CL:0000066!2.42e-17!254;CL:0000223!5.60e-17!59;CL:0000076!2.63e-15!62;CL:0002368!1.33e-13!13;CL:0002166!4.47e-13!3;CL:0002621!5.66e-13!3;CL:0002251!8.44e-11!21;CL:0000244!1.37e-09!4;CL:0000731!1.37e-09!4;CL:0002159!1.87e-07!13;CL:0000220!9.50e-07!246 | |ontology_enrichment_celltype=CL:0002076!3.86e-22!43;CL:0000066!2.42e-17!254;CL:0000223!5.60e-17!59;CL:0000076!2.63e-15!62;CL:0002368!1.33e-13!13;CL:0002166!4.47e-13!3;CL:0002621!5.66e-13!3;CL:0002251!8.44e-11!21;CL:0000244!1.37e-09!4;CL:0000731!1.37e-09!4;CL:0002159!1.87e-07!13;CL:0000220!9.50e-07!246 | ||
|ontology_enrichment_celltype_v019=CL:0002166;3.81e-25;3!CL:0002621;8.94e-25;3!CL:0002076;3.40e-10;42!CL:0002251;1.08e-08;20!CL:0002231;2.79e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002166,3.38e-25,3;CL:0002621,4.87e-25,3;CL:0002076,7.85e-11,42;CL:0002251,1.00e-08,20;CL:0000066,6.20e-08,253;CL:0000223,7.45e-08,58;CL:0002231,2.79e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008814;2.72e-10;2!UBERON:0010056;2.72e-10;2 | |||
|ontology_enrichment_disease=DOID:1749!1.11e-36!14 | |ontology_enrichment_disease=DOID:1749!1.11e-36!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;7.14e-21;14!DOID:4556;2.12e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,9.48e-21,14;DOID:4556,2.05e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0003729!2.06e-19!5;UBERON:0000161!7.44e-16!35;UBERON:0003343!7.97e-16!4;UBERON:0004785!7.97e-16!4;UBERON:0000344!6.08e-15!12;UBERON:0001004!1.76e-14!72;UBERON:0000166!2.06e-13!21;UBERON:0000365!4.37e-13!5;UBERON:0001949!5.66e-13!3;UBERON:0000974!5.94e-13!10;UBERON:0000165!5.84e-12!28;UBERON:0000930!5.84e-12!28;UBERON:0004119!7.73e-12!169;UBERON:0000925!7.73e-12!169;UBERON:0006595!7.73e-12!169;UBERON:0005910!6.56e-11!6;UBERON:0001708!6.60e-10!4;UBERON:0001704!6.60e-10!4;UBERON:0000065!3.68e-09!53;UBERON:0001255!1.42e-08!2;UBERON:0001556!1.42e-08!2;UBERON:0003102!1.08e-07!95;UBERON:0001444!1.87e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;8.94e-25;3!UBERON:0001708;3.91e-19;4!UBERON:0008895;3.91e-19;4!UBERON:0011159;1.62e-15;5!UBERON:0000486;3.69e-14;12!UBERON:0003729;4.85e-13;13!UBERON:0003929;3.30e-11;7!UBERON:0003350;6.34e-10;8!UBERON:0001828;6.34e-10;8!UBERON:0000161;4.05e-09;19!UBERON:0000166;4.05e-09;19!UBERON:0000344;1.08e-08;20!UBERON:0004807;5.32e-08;22!UBERON:0011137;1.46e-07;11!UBERON:0010323;1.46e-07;11!UBERON:0001723;2.79e-07;3!UBERON:0001033;2.79e-07;3!UBERON:0005911;6.35e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,4.87e-25,3;UBERON:0001708,3.57e-19,4;UBERON:0008895,3.57e-19,4;UBERON:0011159,1.51e-15,5;UBERON:0010188,4.01e-13,6;UBERON:0002539,4.01e-13,6;UBERON:0008816,4.01e-13,6;UBERON:0003729,4.28e-13,13;UBERON:0003350,5.06e-10,8;UBERON:0001828,5.06e-10,8;UBERON:0008814,1.14e-09,18;UBERON:0000344,1.00e-08,20;UBERON:0000161,2.54e-08,36;UBERON:0000033,3.79e-08,56;UBERON:0000166,5.52e-08,22;UBERON:0010323,1.42e-07,11;UBERON:0000153,2.32e-07,62;UBERON:0007811,2.32e-07,62;UBERON:0001723,3.16e-07,3;UBERON:0001033,3.16e-07,3;UBERON:0010056,3.16e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54608682530637,1.63647672354501,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,0,0.301586917234893,0.648119116109707,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,5.03946384596579,1.41775097242386,0.447792613514241,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40354529212299,0.644566922551274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0.576570202095319,3.70076866234294,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0,0.43050537267123,0,0.886860307073351,2.06751060186264,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.435296032902013,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,2.1110671705139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0.358177682162975,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490738592505128,0.471878893390961,0.366857197043358,1.15525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,1.05868461514708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0.0620747142958579,0,0,0,0,0.342233301085281,0.26940821205835,0.0717222053926763,0,0.976839223331694,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54608682530637,1.63647672354501,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,0,0.301586917234893,0.648119116109707,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,5.03946384596579,1.41775097242386,0.447792613514241,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40354529212299,0.644566922551274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0.576570202095319,3.70076866234294,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0,0.43050537267123,0,0.886860307073351,2.06751060186264,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.435296032902013,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,2.1110671705139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0.358177682162975,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490738592505128,0.471878893390961,0.366857197043358,1.15525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,1.05868461514708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0.0620747142958579,0,0,0,0,0.342233301085281,0.26940821205835,0.0717222053926763,0,0.976839223331694,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p28@FRMD6 | |short_description=p28@FRMD6 | ||
}} | }} |
Latest revision as of 04:44, 20 September 2015
Short description: | p28@FRMD6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_FRMD6_5end |
Coexpression cluster: | C362_Small_Mallassezderived_Urothelial_Gingival_Prostate_Keratinocyte_Tracheal |
Association with transcript: | -118bp_to_ENST00000556137_5end |
EntrezGene: | FRMD6 |
HGNC: | 19839 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 3.38e-25 | 3 |
gingival epithelial cell | 4.87e-25 | 3 |
endo-epithelial cell | 7.85e-11 | 42 |
epithelial cell of alimentary canal | 1.00e-08 | 20 |
epithelial cell | 6.20e-08 | 253 |
endodermal cell | 7.45e-08 | 58 |
epithelial cell of prostate | 2.79e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 4.87e-25 | 3 |
jaw skeleton | 3.57e-19 | 4 |
splanchnocranium | 3.57e-19 | 4 |
primary subdivision of cranial skeletal system | 1.51e-15 | 5 |
protuberance | 4.01e-13 | 6 |
pharyngeal arch | 4.01e-13 | 6 |
embryonic head | 4.01e-13 | 6 |
mouth mucosa | 4.28e-13 | 13 |
epithelium of mucosa | 5.06e-10 | 8 |
gingiva | 5.06e-10 | 8 |
pharyngeal arch system | 1.14e-09 | 18 |
mucosa | 1.00e-08 | 20 |
orifice | 2.54e-08 | 36 |
head | 3.79e-08 | 56 |
oral opening | 5.52e-08 | 22 |
cranial skeletal system | 1.42e-07 | 11 |
anterior region of body | 2.32e-07 | 62 |
craniocervical region | 2.32e-07 | 62 |
tongue | 3.16e-07 | 3 |
gustatory system | 3.16e-07 | 3 |
future tongue | 3.16e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 9.48e-21 | 14 |
lung large cell carcinoma | 2.05e-07 | 3 |