FFCP PHASE1:Hg19::chr15:31453359..31453370,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4308 | |EntrezGene=4308 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7146 | |HGNC=7146 | ||
|TSSclassifier=strong | |||
|UniProt=D9IDV3 | |UniProt=D9IDV3 | ||
|association_with_transcript=105bp_to_ENST00000542188,NM_001252020_5end | |association_with_transcript=105bp_to_ENST00000542188,NM_001252020_5end | ||
|cluster_id=chr15:31453359..31453370,- | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_2_at_TRPM1_5end | |description=CAGE_peak_2_at_TRPM1_5end | ||
|id=chr15:31453359..31453370,- | |id=chr15:31453359..31453370,- | ||
|ontology_enrichment_celltype=CL:0002586!2.89e-12!3;CL:0000149!1.57e-09!4;CL:0000243!8.90e-09!15;CL:0000125!8.90e-09!15;CL:0000030!8.90e-09!15;CL:0000339!8.90e-09!15;CL:0000095!5.94e-08!17;CL:0000123!5.94e-08!17 | |ontology_enrichment_celltype=CL:0002586!2.89e-12!3;CL:0000149!1.57e-09!4;CL:0000243!8.90e-09!15;CL:0000125!8.90e-09!15;CL:0000030!8.90e-09!15;CL:0000339!8.90e-09!15;CL:0000095!5.94e-08!17;CL:0000123!5.94e-08!17 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.93e-23;3!UBERON:0006238;2.40e-07;10 | |||
|ontology_enrichment_disease=DOID:3093!5.08e-12!11;DOID:5409!1.44e-09!4 | |ontology_enrichment_disease=DOID:3093!5.08e-12!11;DOID:5409!1.44e-09!4 | ||
|ontology_enrichment_disease_v019=DOID:3093;7.70e-07;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,7.48e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0000966!2.46e-59!5;UBERON:0005388!2.46e-59!5;UBERON:0001802!2.46e-59!5;UBERON:0000970!8.28e-27!20;UBERON:0002104!1.44e-25!21;UBERON:0000020!2.07e-23!23;UBERON:0001032!1.82e-22!24;UBERON:0004456!1.82e-22!24;UBERON:0000019!2.52e-16!19;UBERON:0000047!2.52e-16!19;UBERON:0004088!2.52e-16!19;UBERON:0003072!2.52e-16!19;UBERON:0003071!2.52e-16!19;UBERON:0004128!2.52e-16!19;UBERON:0001456!7.53e-15!21;UBERON:0001781!2.89e-12!3;UBERON:0001782!2.89e-12!3;UBERON:0005424!2.89e-12!3;UBERON:0005085!5.69e-11!29;UBERON:0001444!6.65e-07!48 | |ontology_enrichment_uberon=UBERON:0000966!2.46e-59!5;UBERON:0005388!2.46e-59!5;UBERON:0001802!2.46e-59!5;UBERON:0000970!8.28e-27!20;UBERON:0002104!1.44e-25!21;UBERON:0000020!2.07e-23!23;UBERON:0001032!1.82e-22!24;UBERON:0004456!1.82e-22!24;UBERON:0000019!2.52e-16!19;UBERON:0000047!2.52e-16!19;UBERON:0004088!2.52e-16!19;UBERON:0003072!2.52e-16!19;UBERON:0003071!2.52e-16!19;UBERON:0004128!2.52e-16!19;UBERON:0001456!7.53e-15!21;UBERON:0001781!2.89e-12!3;UBERON:0001782!2.89e-12!3;UBERON:0005424!2.89e-12!3;UBERON:0005085!5.69e-11!29;UBERON:0001444!6.65e-07!48 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.50e-14;5!UBERON:0005388;1.50e-14;5!UBERON:0001802;1.50e-14;5!UBERON:0000970;2.67e-14;20!UBERON:0002104;1.12e-13;21!UBERON:0000020;1.36e-12;23!UBERON:0001032;4.08e-12;24!UBERON:0004456;4.08e-12;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,1.16e-13,21;UBERON:0002104,1.16e-13,21;UBERON:0000966,2.45e-12,6;UBERON:0005388,2.45e-12,6;UBERON:0001802,2.45e-12,6;UBERON:0000020,4.20e-12,24;UBERON:0001032,4.20e-12,24;UBERON:0004456,4.20e-12,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71176888936639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.11889949264054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.00335809236594,0.632054446930906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.989464650708862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71176888936639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.11889949264054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.00335809236594,0.632054446930906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.989464650708862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@TRPM1 | |short_description=p2@TRPM1 | ||
}} | }} |
Latest revision as of 03:31, 17 September 2015
Short description: | p2@TRPM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRPM1_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 105bp_to_ENST00000542188, NM_001252020_5end |
EntrezGene: | TRPM1 |
HGNC: | 7146 |
UniProt: | D9IDV3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
eye | 1.16e-13 | 21 |
visual system | 1.16e-13 | 21 |
retina | 2.45e-12 | 6 |
photoreceptor array | 2.45e-12 | 6 |
posterior segment of eyeball | 2.45e-12 | 6 |
sense organ | 4.20e-12 | 24 |
sensory system | 4.20e-12 | 24 |
entire sense organ system | 4.20e-12 | 24 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 7.48e-07 | 11 |