FFCP PHASE1:Hg19::chr1:65888177..65888194,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:65888177..65888194,+ | |||
|description=CAGE_peak_at_chr1:65888177..65888194,+ | |description=CAGE_peak_at_chr1:65888177..65888194,+ | ||
|id=chr1:65888177..65888194,+ | |id=chr1:65888177..65888194,+ | ||
|ontology_enrichment_celltype=CL:0000213!2.08e-09!57;CL:0000215!2.08e-09!57;CL:0005020!5.79e-07!6;CL:0002138!5.79e-07!6;CL:0005022!5.79e-07!6;CL:0000076!6.64e-07!62;CL:0000077!8.38e-07!19 | |ontology_enrichment_celltype=CL:0000213!2.08e-09!57;CL:0000215!2.08e-09!57;CL:0005020!5.79e-07!6;CL:0002138!5.79e-07!6;CL:0005022!5.79e-07!6;CL:0000076!6.64e-07!62;CL:0000077!8.38e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0002564;1.22e-29;3!CL:0002561;5.39e-20;2!CL:0002602;5.39e-20;2!CL:0002559;1.48e-08;5!CL:0002138;3.80e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,1.48e-29,3;CL:0002602,2.74e-20,2;CL:0002561,5.40e-20,2;CL:0002559,1.48e-08,5;CL:0005020,4.44e-07,6;CL:0002138,4.44e-07,6;CL:0005022,4.44e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0010115;3.08e-11;1!CL:0005022;3.80e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:6193;2.79e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,2.79e-11,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;8.47e-48;5!UBERON:0002216;8.47e-48;5!UBERON:0011134;8.47e-48;5!UBERON:0002209;8.47e-48;5!UBERON:0002213;8.47e-48;5!UBERON:0007844;8.47e-48;5!UBERON:0011138;8.47e-48;5!UBERON:0001130;8.47e-48;5!UBERON:0001066;8.47e-48;5!UBERON:0001468;8.47e-48;5!UBERON:0004905;6.64e-30;8!UBERON:0000982;6.64e-30;8!UBERON:0004770;6.64e-30;8!UBERON:0002242;1.22e-29;3!UBERON:0006444;5.39e-20;2!UBERON:0005933;5.39e-20;2!UBERON:0001995;5.39e-20;2!UBERON:0005942;5.39e-20;2!UBERON:0004715;5.39e-20;2!UBERON:0005932;5.39e-20;2!UBERON:0000075;6.18e-15;16!UBERON:0002418;1.16e-13;3!UBERON:0004755;1.16e-13;3!UBERON:0004765;6.37e-13;26!UBERON:0002363;3.08e-11;1!UBERON:0007195;4.57e-11;1!UBERON:0002073;1.48e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,5.24e-48,5;UBERON:0002216,5.24e-48,5;UBERON:0011134,5.24e-48,5;UBERON:0002209,5.24e-48,5;UBERON:0002213,5.24e-48,5;UBERON:0005856,5.24e-48,5;UBERON:0005866,5.24e-48,5;UBERON:0005863,5.24e-48,5;UBERON:0007844,5.24e-48,5;UBERON:0011138,5.24e-48,5;UBERON:0001130,5.24e-48,5;UBERON:0001066,5.24e-48,5;UBERON:0001468,5.24e-48,5;UBERON:0004905,4.93e-30,8;UBERON:0000982,4.93e-30,8;UBERON:0004770,4.93e-30,8;UBERON:0002242,1.48e-29,3;UBERON:0003068,1.48e-29,3;UBERON:0002328,1.48e-29,3;UBERON:0004880,1.48e-29,3;UBERON:0006444,2.74e-20,2;UBERON:0001995,2.74e-20,2;UBERON:0004715,2.74e-20,2;UBERON:0005933,5.40e-20,2;UBERON:0005942,5.40e-20,2;UBERON:0005932,5.40e-20,2;UBERON:0000075,5.34e-15,16;UBERON:0002418,7.42e-14,3;UBERON:0004755,7.42e-14,3;UBERON:0002363,3.08e-11,1;UBERON:0007645,3.08e-11,1;UBERON:0007647,3.08e-11,1;UBERON:0010115,3.08e-11,1;UBERON:0007195,5.57e-11,1;UBERON:0002073,1.48e-08,5;UBERON:0005086,1.48e-08,5;UBERON:0011137,9.23e-07,14 | |||
|phase1_expression=0,0.428201047781966,0,0,0,0,0,0,0,0,0,0,0,1.8564952944007,2.98257638155124,0,0,0,0,0,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0.612167784741805,0,0,0,0.199463657621632,0.426224750532694,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0.35576626268671,0.33472061276467,0,0.760272105718513,0,0.367663080345869,0,0.357198913136319,0,0.337834441449967,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,1.34710672069688,0.653847612453835,0,0.576175924479999,0,0,0,0,0,0,0,0.204154171254893,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0.919463387397059,0.45071417671979,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78620756819187,1.44375896333917,0.118306800039844,0.168584690078102,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0,0,1.01056513432752,0.925971025153221,1.52203321787679,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.299918973546171,0,0,0,0.958499421966331,0,0,0.289562613335158,0.61642896765115,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94459580125936,2.50085260529839,2.17012018959788,0,0.178428988797162,0.315404830067869,0.234282829985426,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0,0,0,0,0,0,0,0,0.105551628892876,1.13733384070897,0,0.215915916102139,0,0.270946437543853,0,0.254876273045038,0,0,0.219259876645935,0.261435451024901,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0.107420244868274,0.145016693914229,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,2.50634477090067,0.677167111206413,0,0,0,0,0,0,0,0,0,0,1.35227839237992,0,7.04935025439248,0,0.293016358543788,0,0.66866030566487,1.98895302764489,0,0,0,0,0.140669416410513,1.55832187032068,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,2.22273980289274,0.969332746095218,0,0,0,0,0,0,0.254253650292766,0.472775363535873,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.153900517007594,0.113942055847001,0,0.0897576444097721,0,0,0,0,0,0.784901281975124,0.664846727600626,0.225595660617181,0.19606253431774,0,0.37950746544837,0.317873157960757,0.210998064528027,0.489698424477443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98075451659474,0,0,0,0,0,0,0.569219092059585,0,0,0.0979923974143777,0.261177619741208,0,5.67553907156335,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0.104602846312333,0,0.288950589901519,0,0,0,0,0,0.558564802544508,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73372556058236,0.891727998294968,0,0,0.959575986597226,0,0,0,0,0,0,0,1.64185041498678,0.170388021785422,0,0,0,0,0,0,0,0,0.628817220398664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332787154610557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0.643324774124777,0,0.226705925512272,0,0.244736704506468,0.179088841081487,0,0,0.176689145945881,0.192914038270915,0.168942440653073,0,0.690860683462397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0.171488009437418,0,0,0.118193840883968,0,0,0,0,0,0.431855182437243,0,0,0,0,0,0,0,0.3414369541879,0,0,0,0.0852134047591577,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0.0644578879735772,0,0,0.705789743431384,0.240724100067505,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0.378893491091197,0.267964130156178,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0.320182037633146,0,0,0,0.244482888365733,0,0,0,0 | |phase1_expression=0,0.428201047781966,0,0,0,0,0,0,0,0,0,0,0,1.8564952944007,2.98257638155124,0,0,0,0,0,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0.612167784741805,0,0,0,0.199463657621632,0.426224750532694,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0.35576626268671,0.33472061276467,0,0.760272105718513,0,0.367663080345869,0,0.357198913136319,0,0.337834441449967,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,1.34710672069688,0.653847612453835,0,0.576175924479999,0,0,0,0,0,0,0,0.204154171254893,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0.919463387397059,0.45071417671979,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78620756819187,1.44375896333917,0.118306800039844,0.168584690078102,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0,0,1.01056513432752,0.925971025153221,1.52203321787679,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.299918973546171,0,0,0,0.958499421966331,0,0,0.289562613335158,0.61642896765115,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94459580125936,2.50085260529839,2.17012018959788,0,0.178428988797162,0.315404830067869,0.234282829985426,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0,0,0,0,0,0,0,0,0.105551628892876,1.13733384070897,0,0.215915916102139,0,0.270946437543853,0,0.254876273045038,0,0,0.219259876645935,0.261435451024901,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0.107420244868274,0.145016693914229,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,2.50634477090067,0.677167111206413,0,0,0,0,0,0,0,0,0,0,1.35227839237992,0,7.04935025439248,0,0.293016358543788,0,0.66866030566487,1.98895302764489,0,0,0,0,0.140669416410513,1.55832187032068,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,2.22273980289274,0.969332746095218,0,0,0,0,0,0,0.254253650292766,0.472775363535873,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.153900517007594,0.113942055847001,0,0.0897576444097721,0,0,0,0,0,0.784901281975124,0.664846727600626,0.225595660617181,0.19606253431774,0,0.37950746544837,0.317873157960757,0.210998064528027,0.489698424477443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98075451659474,0,0,0,0,0,0,0.569219092059585,0,0,0.0979923974143777,0.261177619741208,0,5.67553907156335,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0.104602846312333,0,0.288950589901519,0,0,0,0,0,0.558564802544508,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73372556058236,0.891727998294968,0,0,0.959575986597226,0,0,0,0,0,0,0,1.64185041498678,0.170388021785422,0,0,0,0,0,0,0,0,0.628817220398664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332787154610557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0.643324774124777,0,0.226705925512272,0,0.244736704506468,0.179088841081487,0,0,0.176689145945881,0.192914038270915,0.168942440653073,0,0.690860683462397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0.171488009437418,0,0,0.118193840883968,0,0,0,0,0,0.431855182437243,0,0,0,0,0,0,0,0.3414369541879,0,0,0,0.0852134047591577,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0.0644578879735772,0,0,0.705789743431384,0.240724100067505,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0.378893491091197,0.267964130156178,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0.320182037633146,0,0,0,0.244482888365733,0,0,0,0 | ||
|short_description=p@chr1:65888177..65888194,+ | |short_description=p@chr1:65888177..65888194,+ | ||
}} | }} |
Latest revision as of 09:52, 28 July 2015
Short description: | p@chr1:65888177..65888194, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:65888177..65888194, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 1.48e-29 | 3 |
annulus pulposus cell | 2.74e-20 | 2 |
outer root sheath cell | 5.40e-20 | 2 |
hair follicle cell | 1.48e-08 | 5 |
lymphangioblast | 4.44e-07 | 6 |
endothelial cell of lymphatic vessel | 4.44e-07 | 6 |
vascular lymphangioblast | 4.44e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 2.79e-11 | 1 |