FFCP PHASE1:Hg19::chr11:76494253..76494317,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:76494253..76494317,+
|short_description=p3@TSKU
|description=CAGE_peak_3_at_TSKU_5end
|association_with_transcript=0bp_to_ENST00000333090,NM_015516,uc001o...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25987 | |EntrezGene=25987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28850 | |HGNC=28850 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WUA8,B3KRF9 | |UniProt=Q8WUA8,B3KRF9 | ||
|association_with_transcript=0bp_to_ENST00000333090,NM_015516,uc001oxt.2_5end | |||
|cluster_id=chr11:76494253..76494317,+ | |||
|description=CAGE_peak_3_at_TSKU_5end | |||
|id=chr11:76494253..76494317,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.37e-23!254;CL:0000220!1.10e-20!246;CL:0002321!2.32e-20!248;CL:0000325!3.45e-09!39;CL:0000055!4.60e-09!180;CL:0000548!8.17e-09!679;CL:0000004!8.17e-09!679;CL:0000255!8.17e-09!679;CL:0000221!2.57e-08!71;CL:0000012!3.44e-08!682;CL:0000223!9.47e-08!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.43e-24,253;CL:0002321,7.47e-20,250;CL:0000221,4.55e-08,72;CL:0000223,4.95e-08,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!2.44e-14!143;DOID:14566!2.97e-10!239;DOID:305!3.71e-10!106;DOID:162!1.38e-09!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,3.66e-14,143;DOID:305,4.95e-10,106;DOID:14566,6.25e-10,239;DOID:162,2.88e-09,235 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.44e-12!169;UBERON:0000925!2.44e-12!169;UBERON:0006595!2.44e-12!169;UBERON:0002100!6.13e-12!216;UBERON:0003104!8.79e-12!238;UBERON:0009142!8.79e-12!238;UBERON:0001007!1.82e-09!155;UBERON:0001555!1.82e-09!155;UBERON:0007026!1.82e-09!155;UBERON:0004921!5.18e-09!129;UBERON:0004185!5.18e-09!129;UBERON:0000466!2.03e-08!126;UBERON:0000077!3.83e-08!130;UBERON:0009569!4.77e-08!113;UBERON:0000490!6.92e-08!138;UBERON:0003914!8.24e-08!118;UBERON:0000481!8.95e-08!347;UBERON:0005256!1.02e-07!143;UBERON:0000475!2.78e-07!365;UBERON:0005911!4.22e-07!82;UBERON:0005177!5.09e-07!107;UBERON:0001048!6.99e-07!168 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,3.00e-12,199;UBERON:0004119,9.32e-11,160;UBERON:0000925,9.32e-11,160;UBERON:0006595,9.32e-11,160;UBERON:0003104,6.32e-09,160;UBERON:0009142,6.32e-09,160;UBERON:0001007,2.46e-08,145;UBERON:0001555,2.46e-08,145;UBERON:0007026,2.46e-08,145;UBERON:0003914,3.20e-08,117;UBERON:0004921,9.44e-08,118;UBERON:0009569,9.64e-08,112;UBERON:0005256,1.07e-07,122;UBERON:0000490,3.39e-07,148;UBERON:0005177,6.23e-07,101;UBERON:0005911,6.27e-07,82 | |||
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| ||
|short_description=p3@TSKU | |||
}} | }} |
Latest revision as of 08:23, 20 September 2015
Short description: | p3@TSKU |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TSKU_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000333090, NM_015516, uc001oxt.2_5end |
EntrezGene: | TSKU |
HGNC: | 28850 |
UniProt: | Q8WUA8B3KRF9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.43e-24 | 253 |
embryonic cell | 7.47e-20 | 250 |
ectodermal cell | 4.55e-08 | 72 |
endodermal cell | 4.95e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
trunk | 3.00e-12 | 199 |
endoderm-derived structure | 9.32e-11 | 160 |
endoderm | 9.32e-11 | 160 |
presumptive endoderm | 9.32e-11 | 160 |
mesenchyme | 6.32e-09 | 160 |
entire embryonic mesenchyme | 6.32e-09 | 160 |
digestive system | 2.46e-08 | 145 |
digestive tract | 2.46e-08 | 145 |
primitive gut | 2.46e-08 | 145 |
epithelial tube | 3.20e-08 | 117 |
subdivision of digestive tract | 9.44e-08 | 118 |
subdivision of trunk | 9.64e-08 | 112 |
trunk mesenchyme | 1.07e-07 | 122 |
unilaminar epithelium | 3.39e-07 | 148 |
trunk region element | 6.23e-07 | 101 |
endo-epithelium | 6.27e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 3.66e-14 | 143 |
carcinoma | 4.95e-10 | 106 |
disease of cellular proliferation | 6.25e-10 | 239 |
cancer | 2.88e-09 | 235 |