FFCP PHASE1:Hg19::chr12:2079960..2079967,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:2079960..2079967,+
|short_description=p13@CACNA1C
|description=CAGE_peak_13_at_CACNA1C_5end
|association_with_transcript=8bp_to_ENST00000543114_5end
|Ent...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=775 | |EntrezGene=775 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1390 | |HGNC=1390 | ||
|TSSclassifier=strong | |||
|UniProt=F5H0X0 | |UniProt=F5H0X0 | ||
|association_with_transcript=8bp_to_ENST00000543114_5end | |||
|cluster_id=chr12:2079960..2079967,+ | |||
|coexpression_cluster_id=C56 | |||
|description=CAGE_peak_13_at_CACNA1C_5end | |||
|id=chr12:2079960..2079967,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0004140;1.07e-23;1!UBERON:0000358;1.34e-23;1!UBERON:0005062;6.07e-23;4!UBERON:0007284;6.07e-23;4!UBERON:0006603;1.33e-09;65 | |||
|ontology_enrichment_disease=DOID:114!2.30e-22!2;DOID:178!6.26e-12!1;DOID:326!6.26e-12!1;DOID:3978!6.26e-12!1;DOID:3394!6.26e-12!1;DOID:5844!6.26e-12!1;DOID:1287!1.13e-11!4 | |||
|ontology_enrichment_disease_v019=DOID:114;1.09e-44;2!DOID:178;4.10e-23;1!DOID:326;4.10e-23;1!DOID:3978;4.10e-23;1!DOID:3394;4.10e-23;1!DOID:5844;4.10e-23;1!DOID:1287;6.07e-23;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,1.53e-44,2;DOID:178,6.40e-23,1;DOID:326,6.40e-23,1;DOID:3978,6.40e-23,1;DOID:3394,6.40e-23,1;DOID:5844,6.40e-23,1;DOID:1287,7.18e-23,4 | |||
|ontology_enrichment_uberon=UBERON:0007100!9.17e-19!27;UBERON:0007023!8.76e-16!115;UBERON:0003978!2.80e-15!3;UBERON:0009751!2.80e-15!3;UBERON:0000946!2.80e-15!3;UBERON:0002523!2.80e-15!3;UBERON:0005983!2.80e-15!3;UBERON:0002165!2.80e-15!3;UBERON:0002062!2.80e-15!3;UBERON:0007280!2.80e-15!3;UBERON:0002146!3.65e-12!1;UBERON:0005623!3.65e-12!1;UBERON:0002135!5.05e-12!1;UBERON:0002079!6.97e-12!1;UBERON:0007029!7.76e-12!1;UBERON:0001154!1.07e-11!1;UBERON:0001153!1.07e-11!1;UBERON:0006834!1.47e-11!1;UBERON:0003103!5.47e-09!69;UBERON:0000948!2.30e-07!24;UBERON:0005498!2.30e-07!24;UBERON:0004140!2.30e-07!24;UBERON:0009881!2.30e-07!24;UBERON:0004141!2.30e-07!24;UBERON:0003084!2.30e-07!24;UBERON:0007005!2.30e-07!24;UBERON:0004139!2.30e-07!24;UBERON:0004291!2.30e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;1.26e-31;25!UBERON:0003978;3.34e-30;3!UBERON:0000946;3.34e-30;3!UBERON:0002146;1.87e-23;1!UBERON:0005623;1.87e-23;1!UBERON:0002135;4.10e-23;1!UBERON:0001255;2.90e-12;2!UBERON:0002133;2.90e-12;2!UBERON:0001556;2.90e-12;2!UBERON:0010313;8.64e-10;10!UBERON:0000948;9.83e-10;22!UBERON:0003103;1.56e-09;61 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003978,3.59e-30,3;UBERON:0009751,3.59e-30,3;UBERON:0000946,3.59e-30,3;UBERON:0002523,3.59e-30,3;UBERON:0005983,3.59e-30,3;UBERON:0002165,3.59e-30,3;UBERON:0002062,3.59e-30,3;UBERON:0007280,3.59e-30,3;UBERON:0007100,2.67e-29,27;UBERON:0002146,2.10e-23,1;UBERON:0005623,2.10e-23,1;UBERON:0002135,4.10e-23,1;UBERON:0003103,9.75e-16,68;UBERON:0004797,1.49e-13,7;UBERON:0002133,2.90e-12,2;UBERON:0001255,3.24e-12,2;UBERON:0001556,3.24e-12,2;UBERON:0010313,8.84e-10,10;UBERON:0002342,8.84e-10,10;UBERON:0005062,8.84e-10,10;UBERON:0007023,2.65e-09,114;UBERON:0000948,5.73e-09,24;UBERON:0005498,5.73e-09,24;UBERON:0004140,5.73e-09,24;UBERON:0009881,5.73e-09,24;UBERON:0004141,5.73e-09,24;UBERON:0003084,5.73e-09,24;UBERON:0007005,5.73e-09,24;UBERON:0004139,5.73e-09,24;UBERON:0004291,5.73e-09,24;UBERON:0001009,4.52e-07,112 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,1.28236427328014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39641200636127,2.52076466412852,0,1.19807400299395,2.57535628881943,1.78537165953498,8.33075058835406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.313972371402056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,1.71603825227734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69281884806909,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,1.28236427328014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39641200636127,2.52076466412852,0,1.19807400299395,2.57535628881943,1.78537165953498,8.33075058835406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.313972371402056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,1.71603825227734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69281884806909,0.122241444182866,0,0,0,0 | ||
|short_description=p13@CACNA1C | |||
}} | }} |
Latest revision as of 18:59, 17 September 2015
Short description: | p13@CACNA1C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_CACNA1C_5end |
Coexpression cluster: | C56_heart_left_umbilical_skeletal_penis_diaphragm_tongue |
Association with transcript: | 8bp_to_ENST00000543114_5end |
EntrezGene: | CACNA1C |
HGNC: | 1390 |
UniProt: | F5H0X0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
valve | 3.59e-30 | 3 |
cardiac mesenchyme | 3.59e-30 | 3 |
cardial valve | 3.59e-30 | 3 |
tunica intima | 3.59e-30 | 3 |
heart layer | 3.59e-30 | 3 |
endocardium | 3.59e-30 | 3 |
endocardial cushion | 3.59e-30 | 3 |
presumptive endocardium | 3.59e-30 | 3 |
primary circulatory organ | 2.67e-29 | 27 |
pulmonary valve | 2.10e-23 | 1 |
semi-lunar valve | 2.10e-23 | 1 |
mitral valve | 4.10e-23 | 1 |
compound organ | 9.75e-16 | 68 |
blood vessel layer | 1.49e-13 | 7 |
atrioventricular valve | 2.90e-12 | 2 |
urinary bladder | 3.24e-12 | 2 |
lower urinary tract | 3.24e-12 | 2 |
neural crest-derived structure | 8.84e-10 | 10 |
neural crest | 8.84e-10 | 10 |
neural fold | 8.84e-10 | 10 |
adult organism | 2.65e-09 | 114 |
heart | 5.73e-09 | 24 |
primitive heart tube | 5.73e-09 | 24 |
primary heart field | 5.73e-09 | 24 |
anterior lateral plate mesoderm | 5.73e-09 | 24 |
heart tube | 5.73e-09 | 24 |
heart primordium | 5.73e-09 | 24 |
cardiac mesoderm | 5.73e-09 | 24 |
cardiogenic plate | 5.73e-09 | 24 |
heart rudiment | 5.73e-09 | 24 |
circulatory system | 4.52e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
heart disease | 1.53e-44 | 2 |
vascular disease | 6.40e-23 | 1 |
ischemia | 6.40e-23 | 1 |
extrinsic cardiomyopathy | 6.40e-23 | 1 |
myocardial ischemia | 6.40e-23 | 1 |
myocardial infarction | 6.40e-23 | 1 |
cardiovascular system disease | 7.18e-23 | 4 |