FFCP PHASE1:Hg19::chr3:165178334..165178342,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:165178334..165178342,+ | |||
|coexpression_cluster_id=C221 | |||
|description=CAGE_peak_at_chr3:165178334..165178342,+ | |description=CAGE_peak_at_chr3:165178334..165178342,+ | ||
|id=chr3:165178334..165178342,+ | |id=chr3:165178334..165178342,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.27e-18!254;CL:0002541!3.63e-10!3;CL:0002621!5.99e-10!3;CL:0002076!2.83e-08!43;CL:0002159!5.67e-08!13 | |ontology_enrichment_celltype=CL:0000066!1.27e-18!254;CL:0002541!3.63e-10!3;CL:0002621!5.99e-10!3;CL:0002076!2.83e-08!43;CL:0002159!5.67e-08!13 | ||
|ontology_enrichment_celltype_v019=CL:0002202;1.01e-15;9!CL:0002632;1.01e-15;9!CL:0000322;1.85e-12;3!CL:0002541;2.74e-12;3!CL:0000307;2.74e-12;3!CL:0002368;3.30e-11;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,1.13e-15,9;CL:0002632,1.13e-15,9;CL:0000322,1.85e-12,3;CL:0002541,2.59e-12,3;CL:0000068,3.24e-12,3;CL:0000069,3.24e-12,3;CL:0000307,3.24e-12,3;CL:0000377,3.24e-12,3;CL:0002368,3.56e-11,13 | |||
|ontology_enrichment_development_v019=CL:0000377;2.74e-12;3 | |||
|ontology_enrichment_disease=DOID:305!2.07e-11!106;DOID:1749!1.23e-10!14;DOID:0050687!1.19e-08!143;DOID:4468!5.82e-08!2;DOID:4929!5.37e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3910;5.48e-18;2!DOID:1749;1.85e-10;14!DOID:3908;5.35e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,5.48e-18,2;DOID:1749,1.90e-10,14;DOID:3908,5.35e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000476!3.63e-10!3;UBERON:0000920!3.63e-10!3;UBERON:0001949!5.99e-10!3;UBERON:0005631!1.09e-07!14;UBERON:0000158!1.09e-07!14;UBERON:0003124!2.18e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;5.48e-18;2!UBERON:0002173;5.48e-18;2!UBERON:0002186;5.48e-18;2!UBERON:0000058;2.94e-14;10!UBERON:0004821;1.85e-12;3!UBERON:0007499;1.85e-12;3!UBERON:0003215;1.85e-12;3!UBERON:0010368;1.85e-12;3!UBERON:0009911;1.85e-12;3!UBERON:0002299;1.85e-12;3!UBERON:0006524;1.85e-12;3!UBERON:0008874;1.85e-12;3!UBERON:0002169;1.85e-12;3!UBERON:0004894;1.85e-12;3!UBERON:0003124;2.74e-12;3!UBERON:0000920;2.74e-12;3!UBERON:0007196;7.58e-10;15!UBERON:0001558;7.58e-10;15!UBERON:0009856;1.12e-09;4!UBERON:0002394;1.50e-09;4!UBERON:0003928;1.50e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,5.48e-18,2;UBERON:0002173,5.48e-18,2;UBERON:0002186,5.48e-18,2;UBERON:0004821,1.85e-12,3;UBERON:0003215,1.85e-12,3;UBERON:0010368,1.85e-12,3;UBERON:0009911,1.85e-12,3;UBERON:0002299,1.85e-12,3;UBERON:0006524,1.85e-12,3;UBERON:0008874,1.85e-12,3;UBERON:0002169,1.85e-12,3;UBERON:0004894,1.85e-12,3;UBERON:0000920,2.59e-12,3;UBERON:0007196,8.10e-10,15;UBERON:0001558,8.10e-10,15;UBERON:0000058,5.35e-08,19;UBERON:0002394,8.02e-07,6;UBERON:0003928,8.02e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.873765488520689,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0.217879444092406,0,0,0.392442930250692,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.201057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.567100388969546,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.40101294060657,0,0,0,0,0,0.308061348417659,0,0,0.633309773357254,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0.510450849978337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,1.08890984861323,0,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0,0,0,10.5130374318373,0.47748896947538,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79736702294654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,0.31900115973192,0.0915975934018623,1.5991043280559,0,0,0,0,0,0,0,0,0.843992258112108,0.979396848954886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.0870592065804026,0,0,0.19351266257817,0,0,0,0,0,0,0,0,0,0.480952921509202,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0.883445729729405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.88332946650923,0,0.733714394086716,0,0,0.690359926060101,0,0,0,0,0,0.49131575253029,0.147856086217045,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709163045303809,0,0,0,0.560544326627578,0,0.863710364874486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672791175483681,0,0,0,0,0,0,0,0,0,0,0.359300808426348,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.873765488520689,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0.217879444092406,0,0,0.392442930250692,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.201057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.567100388969546,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.40101294060657,0,0,0,0,0,0.308061348417659,0,0,0.633309773357254,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0.510450849978337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,1.08890984861323,0,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0,0,0,10.5130374318373,0.47748896947538,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79736702294654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,0.31900115973192,0.0915975934018623,1.5991043280559,0,0,0,0,0,0,0,0,0.843992258112108,0.979396848954886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.0870592065804026,0,0,0.19351266257817,0,0,0,0,0,0,0,0,0,0.480952921509202,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0.883445729729405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.88332946650923,0,0.733714394086716,0,0,0.690359926060101,0,0,0,0,0,0.49131575253029,0.147856086217045,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709163045303809,0,0,0,0.560544326627578,0,0.863710364874486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672791175483681,0,0,0,0,0,0,0,0,0,0,0.359300808426348,0,0,0,0,0,0 | ||
|short_description=p@chr3:165178334..165178342,+ | |short_description=p@chr3:165178334..165178342,+ | ||
}} | }} |
Latest revision as of 17:55, 29 July 2015
Short description: | p@chr3:165178334..165178342, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:165178334..165178342, + |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 1.13e-15 | 9 |
epithelial cell of lower respiratory tract | 1.13e-15 | 9 |
pneumocyte | 1.85e-12 | 3 |
chorionic membrane mesenchymal stem cell | 2.59e-12 | 3 |
duct epithelial cell | 3.24e-12 | 3 |
branched duct epithelial cell | 3.24e-12 | 3 |
tracheal epithelial cell | 3.24e-12 | 3 |
tracheoblast | 3.24e-12 | 3 |
respiratory epithelial cell | 3.56e-11 | 13 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 5.48e-18 | 2 |
alveolar duct | 5.48e-18 | 2 |
bronchiole | 5.48e-18 | 2 |
pulmonary alveolus epithelium | 1.85e-12 | 3 |
alveolus | 1.85e-12 | 3 |
pulmonary lobule | 1.85e-12 | 3 |
lobule | 1.85e-12 | 3 |
alveolus of lung | 1.85e-12 | 3 |
alveolar system | 1.85e-12 | 3 |
pulmonary acinus | 1.85e-12 | 3 |
alveolar sac | 1.85e-12 | 3 |
alveolar wall | 1.85e-12 | 3 |
egg chorion | 2.59e-12 | 3 |
tracheobronchial tree | 8.10e-10 | 15 |
lower respiratory tract | 8.10e-10 | 15 |
duct | 5.35e-08 | 19 |
bile duct | 8.02e-07 | 6 |
digestive system duct | 8.02e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 5.48e-18 | 2 |
squamous cell carcinoma | 1.90e-10 | 14 |
non-small cell lung carcinoma | 5.35e-08 | 5 |