FFCP PHASE1:Hg19::chr19:6744539..6744568,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9322 | |EntrezGene=9322 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12304 | |HGNC=12304 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-71bp_to_ENST00000462140_5end | |association_with_transcript=-71bp_to_ENST00000462140_5end | ||
|cluster_id=chr19:6744539..6744568,+ | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_4_at_TRIP10_5end | |description=CAGE_peak_4_at_TRIP10_5end | ||
|id=chr19:6744539..6744568,+ | |id=chr19:6744539..6744568,+ | ||
|ontology_enrichment_celltype=CL:0000057!4.54e-11!75;CL:0000055!1.35e-10!180;CL:0002620!3.54e-08!23 | |ontology_enrichment_celltype=CL:0000057!4.54e-11!75;CL:0000055!1.35e-10!180;CL:0002620!3.54e-08!23 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.12e-18;19!CL:0002334;1.43e-08;12!CL:0002620;2.52e-07;23!CL:0002577;4.67e-07;3!CL:0002541;8.05e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,9.86e-19,19;CL:0000057,8.81e-11,76;CL:0002334,1.16e-08,12;CL:0002620,2.69e-07,23;CL:0002577,4.48e-07,3;CL:0002541,7.17e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.09e-07;29 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000478!4.65e-12!24;UBERON:0003104!1.86e-11!238;UBERON:0009142!1.86e-11!238;UBERON:0005631!2.55e-11!14;UBERON:0000158!2.55e-11!14;UBERON:0002100!3.14e-11!216;UBERON:0004119!3.42e-09!169;UBERON:0000925!3.42e-09!169;UBERON:0006595!3.42e-09!169;UBERON:0004923!4.41e-09!57;UBERON:0001737!1.90e-08!9;UBERON:0000468!4.70e-08!659;UBERON:0000481!4.91e-08!347;UBERON:0000077!1.43e-07!130;UBERON:0000475!2.41e-07!365;UBERON:0003124!5.12e-07!7;UBERON:0001048!7.97e-07!168;UBERON:0004872!8.00e-07!84;UBERON:0000926!9.88e-07!448;UBERON:0004120!9.88e-07!448;UBERON:0006603!9.88e-07!448 | |ontology_enrichment_uberon=UBERON:0000478!4.65e-12!24;UBERON:0003104!1.86e-11!238;UBERON:0009142!1.86e-11!238;UBERON:0005631!2.55e-11!14;UBERON:0000158!2.55e-11!14;UBERON:0002100!3.14e-11!216;UBERON:0004119!3.42e-09!169;UBERON:0000925!3.42e-09!169;UBERON:0006595!3.42e-09!169;UBERON:0004923!4.41e-09!57;UBERON:0001737!1.90e-08!9;UBERON:0000468!4.70e-08!659;UBERON:0000481!4.91e-08!347;UBERON:0000077!1.43e-07!130;UBERON:0000475!2.41e-07!365;UBERON:0003124!5.12e-07!7;UBERON:0001048!7.97e-07!168;UBERON:0004872!8.00e-07!84;UBERON:0000926!9.88e-07!448;UBERON:0004120!9.88e-07!448;UBERON:0006603!9.88e-07!448 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;5.75e-18;24!UBERON:0001737;1.15e-16;9!UBERON:0001557;1.15e-16;9!UBERON:0005631;6.30e-14;10!UBERON:0000158;6.30e-14;10!UBERON:0003688;1.25e-11;6!UBERON:0002358;1.25e-11;6!UBERON:0003684;1.25e-11;6!UBERON:0001178;1.25e-11;6!UBERON:0000305;6.23e-09;7!UBERON:0001987;3.50e-08;4!UBERON:0004457;2.18e-07;9!UBERON:0000042;2.18e-07;9!UBERON:0003124;8.05e-07;3!UBERON:0000920;8.05e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.15e-20,14;UBERON:0000158,3.15e-20,14;UBERON:0000478,4.51e-18,24;UBERON:0001737,1.24e-16,9;UBERON:0003124,1.64e-13,7;UBERON:0003688,1.00e-11,6;UBERON:0002358,1.00e-11,6;UBERON:0003684,1.00e-11,6;UBERON:0001178,1.00e-11,6;UBERON:0004871,5.66e-10,8;UBERON:0004923,4.99e-09,66;UBERON:0000305,1.14e-08,7;UBERON:0001987,2.67e-08,4;UBERON:0004340,2.67e-08,4;UBERON:0008947,5.56e-07,38;UBERON:0003258,5.56e-07,38;UBERON:0000920,7.17e-07,3 | |||
|phase1_expression=3.27021082687002,1.92690471501885,2.96004248601539,8.00586386825043,3.12872766099101,7.85104671690332,0,0,0.783556884599516,1.47440361900905,4.18680700783456,4.58726881473362,2.63766978228454,0.247532705920093,0.331397375727916,0,0.602694528023977,0,0.487932798790507,0.369363174230364,0.612002073732759,0,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0.0787107813136792,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.511450247374121,0,0,0.289693037921647,0,0.486634870302636,0.189069634328136,0.221729397462564,0,0,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0.24406205754817,0,0.81014194788176,0.0892997282840798,0,0,0,0,0,0,0,0,0.496971951695318,1.01304409331664,0.132409180813219,0.286836620748814,0,0.560677600142307,1.06748995729705,1.2333377420858,0.622422070799533,0.134710672069688,0.163461903113459,0.454072282934794,0,0.234321431833797,0,1.1409436430889,0.896692083310806,0.23486899728753,0,0.421352420106746,1.42907919878425,0.491337269247072,1.13658359293342,0,0.247266929278557,0,0.718618141816238,0,0.125118519871964,0.277064115484183,0,2.14541457059314,1.05166641234618,0.794025282120147,0.538168907066586,0.213557388818567,1.27159140695737,1.20036438433761,1.13357782162283,2.83404594050192,1.11670113798954,2.19409231913646,2.82567314967476,1.26216887122057,1.47279837827679,0.161646056818812,0.710019185033229,0.806016785821122,1.01736355386293,0,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,1.44375896333917,4.02243120135469,6.57480291304597,2.16909926895134,3.52940712743661,5.44698610231015,5.69449485866632,4.31460186112526,4.51309369788296,2.69323009862473,0,1.40241773803446,0,0,0,0,0,0,0.737930631258681,0,0.219500570817251,0,0,0,0,0,0,0.115930404975077,1.05667824812239,0.144366447761074,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.336393253036082,0,0.07333828582095,0.646358578788889,3.57656445851882,0,1.06375246633948,1.04007436911366,0.257207374262142,1.41849132023278,0,0.57191197463259,1.62786481617433,1.64648067356154,0.65147236858747,1.06617584622764,0.791951872933429,0,0,0.099972991182057,0,0,0,0.239624855491583,2.29723871668228,0,0.723906533337896,1.2328579353023,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.24538298343828,1.00034104211935,0.271265023699736,0,1.78428988797162,2.68094105557689,1.05427273493442,0,0,0,0,0,0.434418072340414,0.783204629850962,0.343143423810856,0,0,0,17.8845267153293,11.6504807657348,5.74541557326393,3.47350930946288,3.99001130548962,1.68396056659844,4.22859192543813,4.60536524160033,3.86049410744658,2.96836132889982,0.154209693802656,0,0,1.03850885836724,0.116210378459959,0.241718899183244,0,0.184161977871793,0.34444334449382,0.182091168006717,0.524497659837696,0,0,0,0,0,0,0,0.215915916102139,0,0,0.501689773854853,0.254876273045038,0.831076008928724,0.447749509444357,0,0,0.256450125116389,0.328014645699706,0.650756789328606,0.9273691048295,0.183138929636687,0,0,0,1.6068392984416,0,0,0.307007349452259,0,0.322260734604821,0.145016693914229,0.0852266274161009,0,0.165284915360978,0.384380134730212,0.382838137483752,0.10115778085555,1.39453664789186,0.94443704049192,0.6970372701606,0,0.532306030317022,1.73986598415015,1.11194531462352,1.00187420719394,0,0.316379424718726,0,0.511795582622668,0.42793898803392,0.318203247925937,0,0.359744915166629,0.54907405947211,0.471249609382746,0.606547444719948,0,0.421258456238981,0.48763373908959,0.487426979262569,1.05650146756755,1.22849920267187,0.282810863907425,0,0,0.66343897524122,1.75380354101505,0,0,5.2756698010303,0.6196469961995,0.845086807596724,0.430234056612155,0.88424136911809,2.1400263088875,0,0,0,0,0,0.0962221127255121,0.670302275535787,2.17781969722645,0.847294206991012,0.43050537267123,0,1.33029046061003,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0,9.07229042003222,0.890894042497916,3.07160702099232,0,0,0.333926115068718,0,0,0.796991953004279,0.276283915531148,0,0,0,2.79935628895627,2.69605053441981,0.895105873378046,0,0.295930216910801,0,5.55684950723184,0,0,0,0,0,0.724999575434793,0,1.01701460117107,0,0,0,0.173624994933292,0.885741385813839,0.120596438625408,0,0,0,0,1.30726156222788,0.41827123283581,0.461701551022782,0.455768223388005,0.46112780877612,0.269272933229316,0.54323685961004,21.0540765423067,2.74792780205587,26.1187040249131,0,0,0,0,0,0.335643173951685,0,0,0.210998064528027,0.489698424477443,0,0,0,0.265372693510018,0,0,0,0.104421949505455,0,0,0,0,0.19566461893209,0,0,0,0,0.063186579628488,0,0,1.99396161812156,0.992975867626496,0.627865836814451,1.19472429772959,0.853828638089378,0.138674673013139,0,0,0.609414446062818,0,0,3.77349692027432,5.5547880985501,2.29923279748986,0.9698901648841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| ||
|short_description=p4@TRIP10 | |short_description=p4@TRIP10 | ||
}} | }} |
Latest revision as of 19:00, 24 September 2015
Short description: | p4@TRIP10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TRIP10_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | -71bp_to_ENST00000462140_5end |
EntrezGene: | TRIP10 |
HGNC: | 12304 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 9.86e-19 | 19 |
fibroblast | 8.81e-11 | 76 |
preadipocyte | 1.16e-08 | 12 |
skin fibroblast | 2.69e-07 | 23 |
placental epithelial cell | 4.48e-07 | 3 |
chorionic membrane mesenchymal stem cell | 7.17e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.15e-20 | 14 |
membranous layer | 3.15e-20 | 14 |
extraembryonic structure | 4.51e-18 | 24 |
larynx | 1.24e-16 | 9 |
chorion | 1.64e-13 | 7 |
omentum | 1.00e-11 | 6 |
peritoneum | 1.00e-11 | 6 |
abdominal cavity | 1.00e-11 | 6 |
visceral peritoneum | 1.00e-11 | 6 |
somatic layer of lateral plate mesoderm | 5.66e-10 | 8 |
organ component layer | 4.99e-09 | 66 |
amnion | 1.14e-08 | 7 |
placenta | 2.67e-08 | 4 |
allantois | 2.67e-08 | 4 |
respiratory primordium | 5.56e-07 | 38 |
endoderm of foregut | 5.56e-07 | 38 |
egg chorion | 7.17e-07 | 3 |