FFCP PHASE1:Hg19::chr19:681723..681751,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:681723..681751,+ | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_at_chr19:681723..681751,+ | |description=CAGE_peak_at_chr19:681723..681751,+ | ||
|id=chr19:681723..681751,+ | |id=chr19:681723..681751,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002541;2.04e-14;3!CL:0002615;3.84e-14;3!CL:0002579;1.03e-13;3!CL:0000349;2.67e-13;19!CL:0002577;5.30e-13;3!CL:0002334;1.94e-12;12!CL:0000136;1.44e-11;13!CL:0002617;2.37e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,2.01e-14,3;CL:0002615,4.04e-14,3;CL:0002579,1.04e-13,3;CL:0000349,2.04e-13,19;CL:0002577,2.42e-13,3;CL:0002334,1.49e-12,12;CL:0000136,5.64e-10,15;CL:0002617,1.81e-09,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004923!9.97e-13!57;UBERON:0000478!2.38e-11!24;UBERON:0005631!3.70e-09!14;UBERON:0000158!3.70e-09!14;UBERON:0003124!3.04e-08!7;UBERON:0003688!2.14e-07!6;UBERON:0002358!2.14e-07!6;UBERON:0003684!2.14e-07!6;UBERON:0001178!2.14e-07!6;UBERON:0002100!9.73e-07!216 | |ontology_enrichment_uberon=UBERON:0004923!9.97e-13!57;UBERON:0000478!2.38e-11!24;UBERON:0005631!3.70e-09!14;UBERON:0000158!3.70e-09!14;UBERON:0003124!3.04e-08!7;UBERON:0003688!2.14e-07!6;UBERON:0002358!2.14e-07!6;UBERON:0003684!2.14e-07!6;UBERON:0001178!2.14e-07!6;UBERON:0002100!9.73e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;4.36e-26;6!UBERON:0002358;4.36e-26;6!UBERON:0003684;4.36e-26;6!UBERON:0001178;4.36e-26;6!UBERON:0000478;7.18e-23;24!UBERON:0004457;3.57e-17;9!UBERON:0000042;3.57e-17;9!UBERON:0001987;1.23e-16;4!UBERON:0003124;2.04e-14;3!UBERON:0000920;2.04e-14;3!UBERON:0005631;6.06e-11;10!UBERON:0000158;6.06e-11;10!UBERON:0005406;4.75e-10;2!UBERON:0004923;4.23e-07;55!UBERON:0000310;7.82e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003124,1.27e-29,7;UBERON:0003688,4.61e-26,6;UBERON:0002358,4.61e-26,6;UBERON:0003684,4.61e-26,6;UBERON:0001178,4.61e-26,6;UBERON:0005631,1.97e-23,14;UBERON:0000158,1.97e-23,14;UBERON:0000478,4.13e-23,24;UBERON:0001987,5.53e-17,4;UBERON:0004340,5.53e-17,4;UBERON:0004923,9.20e-17,66;UBERON:0000920,2.01e-14,3;UBERON:0004457,1.07e-12,12;UBERON:0000042,1.07e-12,12;UBERON:0005406,4.56e-10,2;UBERON:0006554,5.20e-07,47;UBERON:0000310,5.72e-07,10;UBERON:0001008,7.94e-07,48 | |||
|phase1_expression=2.18014055124668,1.49870366723688,4.08767771878316,4.00293193412522,3.12872766099101,3.48935409640147,0,0,0.261185628199839,0.737201809504527,2.09340350391728,0.436882744260345,1.31883489114227,0.247532705920093,0,0,0,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.6024118375565,0.739508020333575,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0.434539556882471,0,0,0.0945348171640679,0.443458794925128,0.087834785693126,0.130979075497713,0,0.741568885568859,0,0,0,0.238490624305342,0,0,0,0,0,0,0.838998872419812,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0.993943903390637,0.759783069987479,0.132409180813219,0.573673241497627,0.354668382198357,0,1.06748995729705,0.98667019366864,0.311211035399766,0,0,0,0,0,0,0,0.448346041655403,0,0.161872944368132,0.140450806702248,0.204154171254893,0,0.103325781175765,0,0.741800787835671,0.910161361938026,0,0,0,0,0,0.919463387397059,0.751190294532984,0.453728732640084,0.179389635688862,0,0,0,0,0.515281080091258,0,0.168776332241266,0.292311015483596,0.252433774244115,0.0920498986422993,0.323292113637624,0,0.403008392910561,0,1.35282597214308,0,0.286804595389004,0,0,0,0,0,0,0,0,2.76269842704961,0,0,0.354920400119532,0,0,0.661763836394364,0.871517776369625,0,0.404493924480493,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0.368965315629341,0,0.658501712451753,0,0.301586917234893,0.0925884451585296,0.325808305310325,0,1.44331342025273,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.283550194484773,0.0895585227028483,0.290633938513962,0,0,0,0,0.144119953416961,0,0,0,0,0,0.205654985406647,0.600686115687835,0,0,0,0,0.646358578788889,0,0.845302752556,0,0,0,1.41849132023278,0.266422179016099,0.428933980974443,0.542621605391443,0,0,0.710783897485092,0,0.602878754119172,0,0.699810938274399,0,0,0,0.239624855491583,0,0,0.579125226670317,0.61642896765115,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0.500170521059677,0.271265023699736,0.415941723061614,0.356857977594324,0,0.234282829985426,0.300946099727719,0,0,0,0,0.173767228936166,0.195801157462741,0,0,0,0,2.12189300012382,1.66435439510497,1.5119514666484,2.23297027036899,0.306923946576125,1.68396056659844,2.56278298511402,2.04682899626681,2.2519548960105,14.8418066444991,0.154209693802656,0.177561725313127,0,0,0,0.846016147141356,3.20810352485256,1.47329582297434,0.229628896329213,0.182091168006717,0.786746489756545,0,0.539107359730903,1.56869953835371,0,0.527758144464379,0,0.170093705276516,0,0,0.812839312631559,0,0,0,0,0,0,0.512900250232778,1.31205858279882,0.325378394664303,0.206082023295445,0,0.082509499920588,0,0.650060246036521,0,0.096670718292122,0.154048617114644,0.307007349452259,0.275673144969061,0.107420244868274,0,0.0852266274161009,0,1.32227932288782,0.960950336825531,0.127612712494584,0.708104465988849,0,0.62962469366128,0,0,0,0,0.37064843820784,0.286249773483982,0,0.316379424718726,0.190630193923825,0.255897791311334,0,0,0.78494864019923,0.179872457583315,0,0.353437207037059,0,0,0.421258456238981,0,0.487426979262569,0,0,0.282810863907425,0,0,0.66343897524122,0,0.578775534266688,0,0.811641507850816,0.6196469961995,0,0.286822704408103,0.589494246078727,0.35667105148125,0,0.844430541190656,0.329294892959902,0,0,0.673554789078584,0,1.08890984861323,0.188287601553558,0.86101074534246,1.68471475667626,1.33029046061003,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0.228234679033192,0.156679895773023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,5.25237866422918,0.296964680832639,0.614321404198464,0,0,0,0,0,0.597743964753209,0,0,0.102268682502155,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0.230850775511391,0.683652335082007,0,1.25660702173681,0.325942115766024,24.8820904590897,5.95384357112105,47.9731298416771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0.889563386041866,1.48276726735803,1.35748534357092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0.347119476670262,0,0.174118413160805,0,0.343972064943233,0.0967563312890851,0,0.164230914106418,0.193978032976839,0,0,0,0,0,0,0.0801588202515337,0,0.19980960958213,0,0,0,0.14405479798815,0,0,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0.179287339332845,0.383830394638891,0,0,0,1.08599920350743,0,0.653174720218818,0,0,0.170388021785422,0,0,0,0,0,0,0,0.320362237703084,0.157204305099666,0.414239055347196,0,0,0,0,0,0.5013797880454,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0.149254802886874,0.233713309847224,0,0,0,0,0,0.151230923763239,0,0,0,0.899606224327209,0.155262956876259,0,0.53168342911599,1.04349012362347,0.450772826991655,1.14241563650639,0,0.181848659202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| ||
|short_description=p@chr19:681723..681751,+ | |short_description=p@chr19:681723..681751,+ | ||
}} | }} |
Latest revision as of 18:21, 27 July 2015
Short description: | p@chr19:681723..681751, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:681723..681751, + |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 2.01e-14 | 3 |
adipocyte of omentum tissue | 4.04e-14 | 3 |
omentum preadipocyte | 1.04e-13 | 3 |
extraembryonic cell | 2.04e-13 | 19 |
placental epithelial cell | 2.42e-13 | 3 |
preadipocyte | 1.49e-12 | 12 |
fat cell | 5.64e-10 | 15 |
adipocyte of breast | 1.81e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
chorion | 1.27e-29 | 7 |
omentum | 4.61e-26 | 6 |
peritoneum | 4.61e-26 | 6 |
abdominal cavity | 4.61e-26 | 6 |
visceral peritoneum | 4.61e-26 | 6 |
extraembryonic membrane | 1.97e-23 | 14 |
membranous layer | 1.97e-23 | 14 |
extraembryonic structure | 4.13e-23 | 24 |
placenta | 5.53e-17 | 4 |
allantois | 5.53e-17 | 4 |
organ component layer | 9.20e-17 | 66 |
egg chorion | 2.01e-14 | 3 |
cavity lining | 1.07e-12 | 12 |
serous membrane | 1.07e-12 | 12 |
perirenal fat | 4.56e-10 | 2 |
urinary system structure | 5.20e-07 | 47 |
breast | 5.72e-07 | 10 |
renal system | 7.94e-07 | 48 |