FFCP PHASE1:Hg19::chr19:7985939..7985954,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6618 | |EntrezGene=6618 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11135 | |HGNC=11135 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=39bp_to_uc002mix.1_5end | |association_with_transcript=39bp_to_uc002mix.1_5end | ||
|cluster_id=chr19:7985939..7985954,+ | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_4_at_SNAPC2_5end | |description=CAGE_peak_4_at_SNAPC2_5end | ||
|id=chr19:7985939..7985954,+ | |id=chr19:7985939..7985954,+ | ||
|ontology_enrichment_celltype=CL:0002371!2.87e-07!591;CL:0000055!5.08e-07!180 | |ontology_enrichment_celltype=CL:0002371!2.87e-07!591;CL:0000055!5.08e-07!180 | ||
|ontology_enrichment_celltype_v019=CL:0000359;6.81e-08;32!CL:0002591;2.73e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,9.14e-08,32;CL:0002591,2.82e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;1.18e-08;3!DOID:127;1.18e-08;3!DOID:3371;2.21e-07;1!DOID:4549;2.21e-07;1!DOID:5861;2.21e-07;1!DOID:6496;2.21e-07;1!DOID:3369;7.13e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,7.21e-09,3;DOID:127,7.21e-09,3;DOID:3371,2.22e-07,1;DOID:4549,2.22e-07,1;DOID:5861,2.22e-07,1;DOID:6496,2.22e-07,1;DOID:3369,5.06e-07,1;DOID:0060072,7.59e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0002204!1.77e-07!167 | |ontology_enrichment_uberon=UBERON:0002204!1.77e-07!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.49e-07;42!UBERON:0003509;1.49e-07;42!UBERON:0004572;1.49e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,2.29e-09,42;UBERON:0003509,2.29e-09,42;UBERON:0004572,2.29e-09,42;UBERON:0003081,1.18e-07,203;UBERON:0004573,1.80e-07,33;UBERON:0004571,1.80e-07,33;UBERON:0002204,5.27e-07,167 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,0,0,0,0,0.631719873426831,0,0.245733936501509,0,0,0,0.123766352960047,0.331397375727916,0,1.20538905604795,0,0,0.123121058076788,0.204000691244253,0.626909442956176,0,0.273748850145768,0,0.152826811495903,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0.200544447470142,0,0.223915474239924,0,0,0,0.755751887377619,0.242584061187816,0.697287110717054,0.822335776043652,0,1.1507695692886,0,1.89185783910868,0,0,0,0.376484679085209,0.272906150057846,0.674170453335254,0,0.641858054152187,0,0,0,0,0.290209238628584,0.56738522469114,0,2.76373531782418,0.521482918420201,1.08594422352558,1.21079900526674,0.368277635987565,0,0,0.212604299965044,0,0.22465726229299,0.150176892841506,0.16072558669708,0,0.19891667719909,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0.560508562981536,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0.255725123687061,0.361439152384566,1.00267582127178,0.579386075843295,0,0,0,0.443458794925128,0,0.72038491523742,0,0.370784442784429,2.59637914923747,0.696518949197069,0.664789802594326,0.238490624305342,0,0,0,0,0,0,1.25849830862972,0.275118041940067,0,0,0,0,0,0,0,0,1.62028389576352,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,1.49091585508596,0.25326102332916,0.529636723252875,0,0.709336764396714,0,2.1349799145941,0.24666754841716,0,0,0.163461903113459,0.151357427644931,0,0,1.24864030732128,0,0.597794722207204,0,0,0,0,0.122834317311768,0.103325781175765,0,0,0,0.718618141816238,0,0,0,0.438977620880838,0,0.150238058906597,0.340296549480063,0,0.213557388818567,0.635795703478686,0,0.412210116953756,0.257640540045629,0.18611685633159,0.168776332241266,0.389748020644795,0,0,0.484938170456436,0,0.10075209822764,0.339121184620975,0.193260853163297,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0.464367928031979,0.721879481669586,0,0.168584690078102,0,0.110293972732394,0.217879444092406,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0.301586917234893,0,0,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0,1.17002132569619,0,0,0,0,0.53735113621709,0,0.383382679165211,39.9057222695714,0.880484340132261,0,0.288239906833923,0.25248486685276,0.380987365753014,0.381988425558278,0,1.71072446022705,0.205654985406647,0.300343057843917,0.571652865261156,0,0,0.07333828582095,0.258543431515556,0,0.845302752556,0.531876233169741,0,0.257207374262142,1.41849132023278,0.266422179016099,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0.239624855491583,0,0,0.579125226670317,0,0.179060963239896,0.112085143993527,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0.36807447515742,0,0,0.415941723061614,0.178428988797162,0.315404830067869,0.117141414992713,0.300946099727719,0,0,0,0.553107505625109,0.347534457872331,0.195801157462741,0.686286847621712,0,0,0.106727557803444,0,0,0,0.248107807818777,0,0,0.256278298511402,1.02341449813341,0.482561763430822,0,0.462629081407967,0.532685175939381,0.246381468041427,0.519254429183621,0.116210378459959,0,0,0.184161977871793,0.229628896329213,0.364182336013434,0.786746489756545,0,0.308061348417659,0,0,0.105551628892876,0,0,0,1.54227252690289,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0.386682873168488,0.154048617114644,0,0.413509717453592,0.107420244868274,0.290033387828457,0.681813019328807,0.267096106940212,0.330569830721956,0.192190067365106,0.255225424989168,0.50578890427775,0,0.31481234683064,0,1.23213432070436,1.59691809095107,0,0.18532421910392,0.286249773483982,0,0,0,0.255897791311334,0,0.318203247925937,0,0,0,0.235624804691373,1.41527737101321,0,0,0,1.21856744815642,0,0.272999822815972,0,2.26016233240486,0.551365343546124,1.99031692572366,0,0.578775534266688,0,0.608731130888112,0,0.845086807596724,0,0,0.7133421029625,0.709522128141196,0.633322905892992,0.658589785919804,0.379473173765715,0,0.192444225451024,0,0,0,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39203086947621,0,0.270455678475983,0.33307196799782,0,0.18714054040822,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0.63337622438398,0,0.276283915531148,0,0,0.123084805461069,0.311039587661807,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0.371072392647405,0,0,0.699679999969566,0,0.1137934482855,0,0,0,0,0,0,0.361789315876224,0,0,0.295547618953547,0.438770794307945,0,0,0.307801034015188,0,0,0,0,0.31900115973192,0.366390373607449,0,0,0.156980256395025,0.831058409500782,0.451191321234361,0.784250137270958,0.839107934879214,0.569261198172555,0.317873157960757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45668227720456,0,0,0,0.063186579628488,0.450970258243478,0.103688191397247,0,0,0.313932918407225,0,0.569219092059585,0,0.347119476670262,0,0,0,0.343972064943233,0,0,0,0.193978032976839,5.91316048833052,0,0.137041924646751,0.19871461170299,0.189932387867636,0,0,0,0,0,0.229073192331831,0,0.288109595976299,0.124252535565433,0.235694034616795,0,0.313808538937,0.101998217636322,0.288950589901519,0,0,0,0.429765441419957,1.05154941711726,0,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| ||
|short_description=p4@SNAPC2 | |short_description=p4@SNAPC2 | ||
}} | }} |
Latest revision as of 22:51, 24 September 2015
Short description: | p4@SNAPC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SNAPC2_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 39bp_to_uc002mix.1_5end |
EntrezGene: | SNAPC2 |
HGNC: | 11135 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 9.14e-08 | 32 |
smooth muscle cell of the pulmonary artery | 2.82e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
artery | 2.29e-09 | 42 |
arterial blood vessel | 2.29e-09 | 42 |
arterial system | 2.29e-09 | 42 |
lateral plate mesoderm | 1.18e-07 | 203 |
systemic artery | 1.80e-07 | 33 |
systemic arterial system | 1.80e-07 | 33 |
musculoskeletal system | 5.27e-07 | 167 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 7.21e-09 | 3 |
leiomyoma | 7.21e-09 | 3 |
chondrosarcoma | 2.22e-07 | 1 |
extraosseous chondrosarcoma | 2.22e-07 | 1 |
myxoid chondrosarcoma | 2.22e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 2.22e-07 | 1 |
peripheral primitive neuroectodermal tumor | 5.06e-07 | 1 |
benign neoplasm | 7.59e-07 | 4 |