FFCP PHASE1:Hg19::chr3:46539486..46539501,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=83597 | |EntrezGene=83597 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=15572 | |HGNC=15572 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BQQ7 | |UniProt=Q9BQQ7 | ||
|association_with_transcript=1bp_to_NM_031440,uc003cps.1_5end | |association_with_transcript=1bp_to_NM_031440,uc003cps.1_5end | ||
|cluster_id=chr3:46539486..46539501,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_2_at_RTP3_5end | |description=CAGE_peak_2_at_RTP3_5end | ||
|id=chr3:46539486..46539501,+ | |id=chr3:46539486..46539501,+ | ||
|ontology_enrichment_celltype=CL:0000181!1.78e-11!12;CL:0000417!1.78e-11!12;CL:0000668!1.78e-11!12;CL:0000414!1.78e-11!12;CL:0000412!1.78e-11!12;CL:0000182!1.78e-11!12;CL:0002195!2.00e-08!2;CL:0002571!2.00e-08!2 | |ontology_enrichment_celltype=CL:0000181!1.78e-11!12;CL:0000417!1.78e-11!12;CL:0000668!1.78e-11!12;CL:0000414!1.78e-11!12;CL:0000412!1.78e-11!12;CL:0000182!1.78e-11!12;CL:0002195!2.00e-08!2;CL:0002571!2.00e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.05e-25;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.96e-25,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!6.28e-19!19;UBERON:0006925!6.28e-19!19;UBERON:0008836!6.28e-19!19;UBERON:0008835!2.35e-16!22;UBERON:0003894!2.35e-16!22;UBERON:0009854!1.20e-15!23;UBERON:0001301!2.75e-15!1;UBERON:0007499!2.13e-14!25;UBERON:0009497!2.13e-14!25;UBERON:0000015!2.13e-14!25;UBERON:0002423!2.13e-14!25;UBERON:0006235!2.13e-14!25;UBERON:0004161!2.13e-14!25;UBERON:0005057!7.61e-14!26;UBERON:0009856!7.61e-14!26;UBERON:0002365!1.30e-11!31;UBERON:0002330!1.30e-11!31;UBERON:0002368!2.78e-10!35;UBERON:0003929!2.88e-09!54;UBERON:0005172!4.18e-09!55;UBERON:0005173!4.18e-09!55;UBERON:0002417!3.53e-08!61;UBERON:0000916!3.53e-08!61;UBERON:0000949!5.51e-08!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.41e-28;19!UBERON:0006925;3.41e-28;19!UBERON:0002423;1.31e-21;25!UBERON:0002365;4.00e-18;31!UBERON:0002330;4.00e-18;31!UBERON:0002368;1.30e-14;33!UBERON:0000949;2.89e-12;43!UBERON:0005172;4.72e-09;52!UBERON:0005173;4.72e-09;52!UBERON:0002530;7.54e-07;57 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.30e-28,19;UBERON:0006925,3.30e-28,19;UBERON:0008836,3.30e-28,19;UBERON:0008835,1.82e-24,22;UBERON:0003894,1.82e-24,22;UBERON:0009854,1.95e-23,23;UBERON:0007499,1.28e-21,25;UBERON:0009497,1.28e-21,25;UBERON:0000015,1.28e-21,25;UBERON:0002423,1.28e-21,25;UBERON:0006235,1.28e-21,25;UBERON:0004161,1.28e-21,25;UBERON:0009856,8.14e-21,26;UBERON:0002365,1.43e-17,31;UBERON:0002330,1.43e-17,31;UBERON:0002368,1.22e-15,35;UBERON:0000949,2.66e-12,45;UBERON:0003929,2.40e-10,54;UBERON:0005172,2.40e-10,54;UBERON:0005173,2.40e-10,54;UBERON:0002530,1.63e-09,59;UBERON:0002417,2.30e-09,60;UBERON:0000916,2.30e-09,60;UBERON:0005911,5.54e-07,82 | |||
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|short_description=p2@RTP3 | |short_description=p2@RTP3 | ||
}} | }} |
Latest revision as of 11:26, 18 September 2015
Short description: | p2@RTP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RTP3_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 1bp_to_NM_031440, uc003cps.1_5end |
EntrezGene: | RTP3 |
HGNC: | 15572 |
UniProt: | Q9BQQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.96e-25 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 3.30e-28 | 19 |
digestive gland | 3.30e-28 | 19 |
liver bud | 3.30e-28 | 19 |
hepatic diverticulum | 1.82e-24 | 22 |
liver primordium | 1.82e-24 | 22 |
digestive tract diverticulum | 1.95e-23 | 23 |
epithelial sac | 1.28e-21 | 25 |
epithelium of foregut-midgut junction | 1.28e-21 | 25 |
anatomical boundary | 1.28e-21 | 25 |
hepatobiliary system | 1.28e-21 | 25 |
foregut-midgut junction | 1.28e-21 | 25 |
septum transversum | 1.28e-21 | 25 |
sac | 8.14e-21 | 26 |
exocrine gland | 1.43e-17 | 31 |
exocrine system | 1.43e-17 | 31 |
endocrine gland | 1.22e-15 | 35 |
endocrine system | 2.66e-12 | 45 |
gut epithelium | 2.40e-10 | 54 |
abdomen element | 2.40e-10 | 54 |
abdominal segment element | 2.40e-10 | 54 |
gland | 1.63e-09 | 59 |
abdominal segment of trunk | 2.30e-09 | 60 |
abdomen | 2.30e-09 | 60 |
endo-epithelium | 5.54e-07 | 82 |