FFCP PHASE1:Hg19::chr1:200638938..200638950,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=83479 | |EntrezGene=83479 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25360 | |HGNC=25360 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z5N6,E7EQG4 | |UniProt=B7Z5N6,E7EQG4 | ||
|association_with_transcript=46bp_to_ENST00000367348_5end | |association_with_transcript=46bp_to_ENST00000367348_5end | ||
|cluster_id=chr1:200638938..200638950,- | |||
|description=CAGE_peak_3_at_DDX59_5end | |description=CAGE_peak_3_at_DDX59_5end | ||
|id=chr1:200638938..200638950,- | |id=chr1:200638938..200638950,- | ||
|ontology_enrichment_celltype=CL:0000066!1.88e-11!254;CL:0002076!3.38e-10!43;CL:0000223!5.62e-08!59 | |ontology_enrichment_celltype=CL:0000066!1.88e-11!254;CL:0002076!3.38e-10!43;CL:0000223!5.62e-08!59 | ||
|ontology_enrichment_celltype_v019=CL:0000307;2.49e-13;3!CL:0002076;2.24e-11;42!CL:0002368;4.16e-11;13!CL:0002327;2.04e-10;4!CL:0002159;6.74e-10;14!CL:0000317;4.14e-09;2!CL:1000448;4.14e-09;2!CL:0002308;4.14e-09;2!CL:0002140;4.14e-09;2!CL:0002202;1.33e-07;9!CL:0002632;1.33e-07;9!CL:0000362;2.18e-07;9!CL:0002251;3.49e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.99e-14,42;CL:0000068,1.80e-13,3;CL:0000069,1.80e-13,3;CL:0000307,1.80e-13,3;CL:0000377,1.80e-13,3;CL:0000066,2.39e-12,253;CL:0000076,2.12e-11,63;CL:0002368,3.44e-11,13;CL:0000223,4.38e-11,58;CL:0002327,1.47e-10,4;CL:0002159,6.80e-10,14;CL:0000317,1.97e-09,2;CL:1000448,1.97e-09,2;CL:0002308,1.97e-09,2;CL:0002140,1.97e-09,2;CL:0002202,1.26e-07,9;CL:0002632,1.26e-07,9;CL:0000362,1.55e-07,9;CL:0002251,3.98e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000377;2.49e-13;3 | |||
|ontology_enrichment_disease=DOID:1749!5.23e-09!14;DOID:0050687!4.56e-07!143 | |ontology_enrichment_disease=DOID:1749!5.23e-09!14;DOID:0050687!4.56e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:1749;5.20e-23;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.47e-23,14 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000974;1.42e-11;6!UBERON:0001911;2.04e-10;4!UBERON:0003343;2.46e-10;4!UBERON:0004785;2.46e-10;4!UBERON:0002419;4.14e-09;2!UBERON:0007771;4.14e-09;2!UBERON:0003297;4.14e-09;2!UBERON:0001821;4.14e-09;2!UBERON:0003487;4.14e-09;2!UBERON:0001820;4.14e-09;2!UBERON:0000365;4.15e-08;5!UBERON:0003729;4.79e-08;13!UBERON:0000344;4.51e-07;20!UBERON:0005910;8.05e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001911,1.47e-10,4;UBERON:0005333,1.47e-10,4;UBERON:0008425,1.47e-10,4;UBERON:0005311,1.47e-10,4;UBERON:0003343,2.44e-10,4;UBERON:0004785,2.44e-10,4;UBERON:0002419,1.97e-09,2;UBERON:0007771,1.97e-09,2;UBERON:0003297,1.97e-09,2;UBERON:0001821,1.97e-09,2;UBERON:0003487,1.97e-09,2;UBERON:0001820,1.97e-09,2;UBERON:0005089,1.97e-09,2;UBERON:0005088,1.97e-09,2;UBERON:0000365,2.20e-08,5;UBERON:0003729,5.69e-08,13;UBERON:0000344,4.46e-07,20;UBERON:0005910,4.77e-07,6;UBERON:0000974,5.12e-07,10 | |||
|phase1_expression=0,0,0.140954404095971,1.0007329835313,0.893922188854576,0,0,0,0,0.245733936501509,0,0,0,0.123766352960047,0.331397375727916,0.672325146451775,0,0,0,0.123121058076788,0.408001382488506,0,0,0,0,0.229240217243854,0.656804715599566,0.0787107813136792,0,0,0,0,1.204823675113,0.739508020333575,0.154934401160603,0.426507697462265,0.293600439334847,1.66198622559563,1.20326668482085,0.868043482863407,0,0,0,0.145398238779565,0,0,0.464858073811369,0,0,0.28769239232215,0.768482119587302,0,0,0,0,0,0.272906150057846,0.224723484445085,0.306083892370903,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0.521482918420201,0,0,0,0.316462387440884,0,0,0.209658645508376,0.112328631146495,0.150176892841506,0,0.570025487482497,0.59675003159727,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0.263384084775077,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0,0.276350017785848,0,0,0.267540828089713,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0.289648807765598,0,0,0,0,0,0.434539556882471,0,0,0.0945348171640679,0,0.351339142772504,0.0654895377488563,0.728590576585084,1.11235332835329,0,0,0,0,0,0,0.596287222100115,0,0,0,0,0.275118041940067,0,0.516833518338658,0.35576626268671,0.33472061276467,0,0,0.24406205754817,0,0,0.535798369704479,0.22452937262617,0.337834441449967,0,0,0.183201743930407,0,0,0.436094052142534,0,0.25326102332916,0.264818361626438,0,0,0,0,0,0,0.134710672069688,0,0,0.576175924479999,0,0,0,0,0.117434498643765,0.161872944368132,0.140450806702248,0.204154171254893,0.122834317311768,0.206651562351531,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0.89694817844431,0,0.211931901159562,0.300091096084402,0.206105058476878,0.257640540045629,0.18611685633159,0.506328996723799,0.584622030967192,0,0,0.484938170456436,0,0.10075209822764,0.169560592310488,0.57978255948989,2.45471508531751,0.573609190778008,0.487894824518382,0.265059536642971,0.464775771478074,0.10366105501537,0.252320850875628,0,0,0,0,0.464367928031979,0,0,0.168584690078102,0,0.220587945464788,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.122988438543114,0.171567810298526,0.658501712451753,1.1240175325762,1.60846355858609,1.11106134190236,0,0,0,0,0,0.144366447761074,0.462985512576611,0.570762456703795,0,0,0,0,0,0.93733833986777,1.17587489739202,0.708875486211932,2.14940454486836,3.19697332365358,1.53353071666084,0,0.264145302039678,0,0,0.12624243342638,0.317489471460845,0.381988425558278,0,0,0.514137463516618,0,0.285826432630578,0.112131084345361,0.87192013766656,0,0,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0,0.791951872933429,0,0,0.299918973546171,0,0,0,0,1.14861935834114,0,0,0,0,0,0.197030760201927,0.215627574859517,0.256686072559497,0.254094624222463,0,0,0,0,0,0,0,0.24538298343828,0,0,0.415941723061614,0.178428988797162,0,0,0,0,0,0,0,0.173767228936166,0,0,0.413536052245775,0,0.320182673410333,0,0,0,0,0.306923946576125,0.280660094433074,0,0,0.160853921143607,0,0,0.177561725313127,0,0,0.232420756919918,0,0.802025881213139,1.19705285616665,0,0,0.393373244878272,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0.261435451024901,0.256450125116389,0,0,0.309123034943167,0.0915694648183434,0.41254749960294,1.72279661398852,1.30012049207304,0,0.193341436584244,0.308097234229289,0.307007349452259,0.275673144969061,0.107420244868274,0.435050081742686,0,0.0890320356467374,0.826424576804891,1.34533047155574,2.93509238737543,0.50578890427775,0,0,0,0,0,0,0,0,0.744316738719335,0,0.190630193923825,0,0,0.318203247925937,0,0.179872457583315,0.274537029736055,0.589062011728432,0.202182481573316,0,0,0,0,1.05650146756755,0.136499911407986,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0.0982490410131212,0,0,0.211107635297664,0.658589785919804,0,0.349934720244983,1.34710957815717,1.34060455107157,3.26672954583968,0.282431402330337,0.43050537267123,1.68471475667626,0,2.06751060186264,0,0,0.569647187174163,0,0,0,0,0,0,0,9.55656842326024,0.185803175125719,0,0.213425530045242,0,0.59873811429845,0,0,0,0,0.228234679033192,0.156679895773023,0,0.169291777801603,0,0,0.425846237690326,0.687010689511529,0.307240764308458,0.223676107892416,0.333698283423817,0.19538809540204,0.278406173895242,0,0,0.33307196799782,0,0,0.439524537815682,0,0.111443384277478,0,0.47748896947538,0.296964680832639,0,0,0,0.111308705022906,0.16480387422676,0.211125408127993,0,0,0,0.102268682502155,0.492339221844278,0,0.179736702294654,0.179021174675609,0,0.197286811273867,0,0,0,0,0,0,0.262379999988587,0,1.2517279311405,0.254253650292766,0.236387681767936,0.689486746482929,0,0.173624994933292,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0,0.21787692703798,0.697118721393016,0.615602068030377,0.113942055847001,1.38338342632836,0.987334088507493,0.108647371922008,0.31900115973192,0.274792780205587,1.06606955203727,0,0,0,0,0.19606253431774,0,0,0,0.210998064528027,0.326465616318295,0,0,0,0.176915129006678,0,0,0.123563938946503,0.104421949505455,0.269604531922708,0,0,0.547364367646998,1.36965233252463,0,0,0,0,0.63186579628488,0,0.1036881913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| ||
|short_description=p3@DDX59 | |short_description=p3@DDX59 | ||
}} | }} |
Latest revision as of 16:24, 19 September 2015
Short description: | p3@DDX59 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DDX59_5end |
Coexpression cluster: | NA |
Association with transcript: | 46bp_to_ENST00000367348_5end |
EntrezGene: | DDX59 |
HGNC: | 25360 |
UniProt: | B7Z5N6E7EQG4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.99e-14 | 42 |
duct epithelial cell | 1.80e-13 | 3 |
branched duct epithelial cell | 1.80e-13 | 3 |
tracheal epithelial cell | 1.80e-13 | 3 |
tracheoblast | 1.80e-13 | 3 |
epithelial cell | 2.39e-12 | 253 |
squamous epithelial cell | 2.12e-11 | 63 |
respiratory epithelial cell | 3.44e-11 | 13 |
endodermal cell | 4.38e-11 | 58 |
mammary gland epithelial cell | 1.47e-10 | 4 |
general ecto-epithelial cell | 6.80e-10 | 14 |
sebum secreting cell | 1.97e-09 | 2 |
epithelial cell of sweat gland | 1.97e-09 | 2 |
epithelial cell of skin gland | 1.97e-09 | 2 |
acinar cell of sebaceous gland | 1.97e-09 | 2 |
epithelial cell of tracheobronchial tree | 1.26e-07 | 9 |
epithelial cell of lower respiratory tract | 1.26e-07 | 9 |
epidermal cell | 1.55e-07 | 9 |
epithelial cell of alimentary canal | 3.98e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
mammary gland | 1.47e-10 | 4 |
mammary bud | 1.47e-10 | 4 |
mammary ridge | 1.47e-10 | 4 |
mammary placode | 1.47e-10 | 4 |
mucosa of oral region | 2.44e-10 | 4 |
respiratory system mucosa | 2.44e-10 | 4 |
skin gland | 1.97e-09 | 2 |
epidermis gland | 1.97e-09 | 2 |
gland of integumental system | 1.97e-09 | 2 |
sebaceous gland | 1.97e-09 | 2 |
skin sebaceous gland | 1.97e-09 | 2 |
sweat gland | 1.97e-09 | 2 |
sweat gland placode | 1.97e-09 | 2 |
sebaceous gland placode | 1.97e-09 | 2 |
urothelium | 2.20e-08 | 5 |
mouth mucosa | 5.69e-08 | 13 |
mucosa | 4.46e-07 | 20 |
transitional epithelium | 4.77e-07 | 6 |
neck | 5.12e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.47e-23 | 14 |