FFCP PHASE1:Hg19::chr12:80084167..80084197,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:80084167..80084197,-
|short_description=p5@PAWR
|description=CAGE_peak_5_at_PAWR_5end
|association_with_transcript=-307bp_to_ENST00000551712_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5074 | |EntrezGene=5074 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8614 | |HGNC=8614 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-307bp_to_ENST00000551712_5end | |||
|cluster_id=chr12:80084167..80084197,- | |||
|coexpression_cluster_id=C3336 | |||
|description=CAGE_peak_5_at_PAWR_5end | |||
|id=chr12:80084167..80084197,- | |||
|ontology_enrichment_celltype=CL:0000066!1.63e-28!254;CL:0000076!5.54e-14!62;CL:0000213!1.89e-13!57;CL:0000215!1.89e-13!57;CL:0002139!9.52e-12!24;CL:0002321!6.95e-11!248;CL:0000220!2.18e-10!246;CL:0000077!1.07e-09!19;CL:0000071!3.26e-08!18;CL:0002546!3.26e-08!18;CL:0000115!1.36e-07!35;CL:0002078!4.59e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.15e-12;24!CL:0000077;3.36e-10;19!CL:0000213;1.89e-09;58!CL:0000215;1.89e-09;58!CL:0000071;8.24e-09;18!CL:0000115;5.73e-08;36!CL:0000076;5.03e-07;63!CL:1000449;7.37e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.22e-28,253;CL:0000213,2.98e-16,58;CL:0000215,2.98e-16,58;CL:0000076,2.82e-13,63;CL:0002139,1.40e-12,24;CL:0002321,1.96e-10,250;CL:0000077,2.31e-10,19;CL:0000115,2.06e-09,36;CL:0002078,5.30e-09,45;CL:0000071,9.29e-09,18;CL:0002546,9.29e-09,18;CL:1000449,6.39e-07,15 | |||
|ontology_enrichment_development_v019=CL:0002546;8.24e-09;18 | |||
|ontology_enrichment_disease=DOID:0050687!2.83e-11!143;DOID:305!3.02e-11!106;DOID:162!1.57e-08!235;DOID:14566!4.65e-08!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,7.63e-10,143;DOID:305,1.59e-09,106;DOID:162,9.40e-09,235;DOID:14566,5.01e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0003886!4.66e-11!63;UBERON:0000466!9.91e-11!126;UBERON:0002553!1.50e-10!70;UBERON:0000464!1.63e-10!104;UBERON:0009569!2.97e-10!113;UBERON:0003914!1.82e-09!118;UBERON:0000487!7.15e-09!22;UBERON:0001986!3.26e-08!18;UBERON:0004638!3.26e-08!18;UBERON:0004852!3.26e-08!18;UBERON:0002417!4.86e-08!61;UBERON:0000916!4.86e-08!61;UBERON:0005177!1.97e-07!107;UBERON:0000058!3.46e-07!26;UBERON:0002323!4.61e-07!46;UBERON:0002113!7.52e-07!27;UBERON:0003918!7.52e-07!27;UBERON:0005095!7.52e-07!27;UBERON:0007687!7.52e-07!27;UBERON:0006914!7.78e-07!25;UBERON:0002049!8.35e-07!79;UBERON:0007798!8.35e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0000487;1.06e-09;22!UBERON:0004638;8.24e-09;18!UBERON:0001986;8.24e-09;18!UBERON:0004852;8.24e-09;18!UBERON:0000490;1.19e-08;33!UBERON:0002113;7.62e-08;24!UBERON:0011143;7.62e-08;24!UBERON:0006914;7.87e-08;25!UBERON:0006554;7.10e-07;30!UBERON:0001008;7.10e-07;30!UBERON:0006555;7.37e-07;15!UBERON:0004819;7.37e-07;15!UBERON:0001285;7.37e-07;15!UBERON:0007684;7.37e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009569,5.39e-10,112;UBERON:0000487,1.80e-09,22;UBERON:0003886,4.55e-09,54;UBERON:0003914,5.72e-09,117;UBERON:0004638,9.29e-09,18;UBERON:0001986,9.29e-09,18;UBERON:0004852,9.29e-09,18;UBERON:0002553,1.54e-08,61;UBERON:0002417,2.62e-08,60;UBERON:0000916,2.62e-08,60;UBERON:0005177,4.85e-08,101;UBERON:0002113,7.78e-08,26;UBERON:0003918,7.78e-08,26;UBERON:0011143,7.78e-08,26;UBERON:0005095,7.78e-08,26;UBERON:0007687,7.78e-08,26;UBERON:0006914,1.18e-07,25;UBERON:0004211,6.39e-07,15;UBERON:0009773,6.39e-07,15;UBERON:0001231,6.39e-07,15;UBERON:0001285,6.39e-07,15;UBERON:0007684,6.39e-07,15;UBERON:0004208,6.39e-07,15 | |||
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| ||
|short_description=p5@PAWR | |||
}} | }} |
Latest revision as of 00:32, 25 September 2015
Short description: | p5@PAWR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PAWR_5end |
Coexpression cluster: | C3336_mesothelioma_testicular_extraskeletal_Endothelial_Lens_pancreatic_Renal |
Association with transcript: | -307bp_to_ENST00000551712_5end |
EntrezGene: | PAWR |
HGNC: | 8614 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.22e-28 | 253 |
lining cell | 2.98e-16 | 58 |
barrier cell | 2.98e-16 | 58 |
squamous epithelial cell | 2.82e-13 | 63 |
endothelial cell of vascular tree | 1.40e-12 | 24 |
embryonic cell | 1.96e-10 | 250 |
mesothelial cell | 2.31e-10 | 19 |
endothelial cell | 2.06e-09 | 36 |
meso-epithelial cell | 5.30e-09 | 45 |
blood vessel endothelial cell | 9.29e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.29e-09 | 18 |
epithelial cell of nephron | 6.39e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
subdivision of trunk | 5.39e-10 | 112 |
simple squamous epithelium | 1.80e-09 | 22 |
body cavity precursor | 4.55e-09 | 54 |
epithelial tube | 5.72e-09 | 117 |
blood vessel endothelium | 9.29e-09 | 18 |
endothelium | 9.29e-09 | 18 |
cardiovascular system endothelium | 9.29e-09 | 18 |
anatomical cavity | 1.54e-08 | 61 |
abdominal segment of trunk | 2.62e-08 | 60 |
abdomen | 2.62e-08 | 60 |
trunk region element | 4.85e-08 | 101 |
kidney | 7.78e-08 | 26 |
kidney mesenchyme | 7.78e-08 | 26 |
upper urinary tract | 7.78e-08 | 26 |
kidney rudiment | 7.78e-08 | 26 |
kidney field | 7.78e-08 | 26 |
squamous epithelium | 1.18e-07 | 25 |
nephron epithelium | 6.39e-07 | 15 |
renal tubule | 6.39e-07 | 15 |
nephron tubule | 6.39e-07 | 15 |
nephron | 6.39e-07 | 15 |
uriniferous tubule | 6.39e-07 | 15 |
nephrogenic mesenchyme | 6.39e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 7.63e-10 | 143 |
carcinoma | 1.59e-09 | 106 |
cancer | 9.40e-09 | 235 |
disease of cellular proliferation | 5.01e-08 | 239 |