FFCP PHASE1:Hg19::chr5:78065848..78065859,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10184 | |EntrezGene=10184 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6588 | |HGNC=6588 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-4bp_to_ENST00000514587_5end | |association_with_transcript=-4bp_to_ENST00000514587_5end | ||
|cluster_id=chr5:78065848..78065859,- | |||
|coexpression_cluster_id=C62 | |||
|description=CAGE_peak_23_at_LHFPL2_5end | |description=CAGE_peak_23_at_LHFPL2_5end | ||
|id=chr5:78065848..78065859,- | |id=chr5:78065848..78065859,- | ||
|ontology_enrichment_celltype=CL:0000819!2.82e-21!1;CL:0000945!7.16e-21!24;CL:0000826!7.16e-21!24;CL:0000785!2.47e-11!2;CL:0000955!2.47e-11!2;CL:0000818!2.47e-11!2;CL:0000954!2.47e-11!2;CL:0000816!2.47e-11!2;CL:0000838!1.02e-09!52;CL:0000542!1.55e-09!53;CL:0000051!1.55e-09!53;CL:0000817!5.54e-08!3 | |ontology_enrichment_celltype=CL:0000819!2.82e-21!1;CL:0000945!7.16e-21!24;CL:0000826!7.16e-21!24;CL:0000785!2.47e-11!2;CL:0000955!2.47e-11!2;CL:0000818!2.47e-11!2;CL:0000954!2.47e-11!2;CL:0000816!2.47e-11!2;CL:0000838!1.02e-09!52;CL:0000542!1.55e-09!53;CL:0000051!1.55e-09!53;CL:0000817!5.54e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0000785;1.81e-40;1!CL:0000819;1.81e-40;1!CL:0000945;1.13e-15;24!CL:0000542;3.39e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000819,2.21e-40,1;CL:0000785,5.70e-21,2;CL:0000955,5.70e-21,2;CL:0000818,5.70e-21,2;CL:0000954,5.70e-21,2;CL:0000816,5.70e-21,2;CL:0000945,1.13e-15,24;CL:0000826,1.13e-15,24;CL:0000817,1.83e-14,3;CL:0000838,1.15e-07,52;CL:0000542,1.55e-07,53;CL:0000051,1.55e-07,53 | |||
|ontology_enrichment_development_v019=UBERON:0001045;1.81e-40;1!CL:0000954;5.15e-21;2!CL:0000051;3.39e-07;53 | |||
|ontology_enrichment_disease=DOID:0060058!2.89e-32!10;DOID:0060073!2.82e-21!1;DOID:8675!2.82e-21!1 | |||
|ontology_enrichment_disease_v019=DOID:0060073;1.81e-40;1!DOID:8675;1.81e-40;1!DOID:0060058;3.05e-36;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,2.21e-40,1;DOID:8675,2.21e-40,1;DOID:0060058,3.05e-36,10;DOID:2531,8.40e-08,51;DOID:0060083,8.40e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0001154!1.88e-21!1;UBERON:0001153!1.88e-21!1;UBERON:0002372!3.45e-21!1;UBERON:0001961!3.45e-21!1;UBERON:0001744!3.45e-21!1;UBERON:0001735!3.45e-21!1;UBERON:0000078!1.61e-10!18;UBERON:0000166!4.19e-09!21;UBERON:0001042!7.36e-09!10;UBERON:0009145!7.36e-09!10;UBERON:0006562!3.90e-08!11;UBERON:0001723!7.76e-08!3;UBERON:0001033!7.76e-08!3;UBERON:0010056!7.76e-08!3;UBERON:0000165!5.70e-07!28;UBERON:0000930!5.70e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0002372;1.81e-40;1!UBERON:0001154;1.81e-40;1!UBERON:0001153;1.81e-40;1!UBERON:0009854;1.81e-40;1!UBERON:0001961;1.81e-40;1!UBERON:0001744;1.81e-40;1!UBERON:0001042;1.81e-40;1!UBERON:0001735;1.81e-40;1!UBERON:0006562;5.15e-21;2!UBERON:0009856;3.26e-11;4!UBERON:0004907;3.10e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,9.91e-41,1;UBERON:0001153,9.91e-41,1;UBERON:0001045,9.91e-41,1;UBERON:0002372,3.30e-40,1;UBERON:0001961,3.30e-40,1;UBERON:0001744,3.30e-40,1;UBERON:0001735,3.30e-40,1;UBERON:0004907,2.74e-09,5 | |||
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|short_description=p23@LHFPL2 | |short_description=p23@LHFPL2 | ||
}} | }} |
Latest revision as of 20:44, 18 September 2015
Short description: | p23@LHFPL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_23_at_LHFPL2_5end |
Coexpression cluster: | C62_Burkitt_tonsil_CD19_submaxillary_spleen_salivary_lymph |
Association with transcript: | -4bp_to_ENST00000514587_5end |
EntrezGene: | LHFPL2 |
HGNC: | 6588 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B-1 B cell | 2.21e-40 | 1 |
mature B cell | 5.70e-21 | 2 |
pre-B-II cell | 5.70e-21 | 2 |
transitional stage B cell | 5.70e-21 | 2 |
small pre-B-II cell | 5.70e-21 | 2 |
immature B cell | 5.70e-21 | 2 |
lymphocyte of B lineage | 1.13e-15 | 24 |
pro-B cell | 1.13e-15 | 24 |
precursor B cell | 1.83e-14 | 3 |
lymphoid lineage restricted progenitor cell | 1.15e-07 | 52 |
lymphocyte | 1.55e-07 | 53 |
common lymphoid progenitor | 1.55e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 9.91e-41 | 1 |
caecum | 9.91e-41 | 1 |
midgut | 9.91e-41 | 1 |
tonsil | 3.30e-40 | 1 |
mucosa-associated lymphoid tissue | 3.30e-40 | 1 |
lymphoid tissue | 3.30e-40 | 1 |
tonsillar ring | 3.30e-40 | 1 |
lower digestive tract | 2.74e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 2.21e-40 | 1 |
lymphosarcoma | 2.21e-40 | 1 |
lymphoma | 3.05e-36 | 10 |
hematologic cancer | 8.40e-08 | 51 |
immune system cancer | 8.40e-08 | 51 |