FFCP PHASE1:Hg19::chr6:75912525..75912580,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1303 | |EntrezGene=1303 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2188 | |HGNC=2188 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-17bp_to_ENST00000416123_5end | |association_with_transcript=-17bp_to_ENST00000416123_5end | ||
|cluster_id=chr6:75912525..75912580,- | |||
|description=CAGE_peak_5_at_COL12A1_5end | |description=CAGE_peak_5_at_COL12A1_5end | ||
|id=chr6:75912525..75912580,- | |id=chr6:75912525..75912580,- | ||
|ontology_enrichment_celltype=CL:0000055!1.58e-16!180;CL:0000057!2.61e-15!75;CL:0002334!8.59e-09!12;CL:0000136!3.57e-08!15;CL:0002620!2.66e-07!23 | |ontology_enrichment_celltype=CL:0000055!1.58e-16!180;CL:0000057!2.61e-15!75;CL:0002334!8.59e-09!12;CL:0000136!3.57e-08!15;CL:0002620!2.66e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0002334;5.23e-12;12!CL:0002620;5.51e-09;23!CL:0000136;2.56e-08;13!CL:0000153;5.28e-08;9!CL:0000447;5.28e-08;9!CL:0000134;3.47e-07;55!CL:0000138;7.71e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.27e-16,76;CL:0002334,4.19e-12,12;CL:0000136,1.15e-10,15;CL:0002620,4.79e-09,23;CL:0002320,2.64e-08,361;CL:0000134,4.13e-08,354;CL:0000153,5.05e-08,9;CL:0000447,5.05e-08,9;CL:0000723,1.16e-07,433;CL:0000048,2.33e-07,427;CL:0000034,4.64e-07,441;CL:0000058,7.75e-07,6;CL:0000138,7.75e-07,6;CL:0000219,8.19e-07,386 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;2.11e-07;5!DOID:450;2.11e-07;5!DOID:66;2.11e-07;5!DOID:423;2.11e-07;5!DOID:0080000;2.11e-07;5!DOID:11722;2.11e-07;5!DOID:2394;2.21e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.31e-07,14;DOID:17,2.02e-07,5;DOID:450,2.02e-07,5;DOID:66,2.02e-07,5;DOID:423,2.02e-07,5;DOID:0080000,2.02e-07,5;DOID:11722,2.02e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0003102!9.22e-12!95;UBERON:0000475!3.60e-10!365;UBERON:0000914!2.97e-08!83;UBERON:0002329!2.97e-08!83;UBERON:0003077!2.97e-08!83;UBERON:0003059!2.97e-08!83;UBERON:0007282!2.97e-08!83;UBERON:0009618!2.97e-08!83;UBERON:0007285!2.97e-08!83;UBERON:0002199!5.11e-08!45;UBERON:0002416!5.11e-08!45;UBERON:0002097!5.50e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;3.44e-10;9!UBERON:0000042;3.44e-10;9!UBERON:0003688;2.50e-09;6!UBERON:0002358;2.50e-09;6!UBERON:0003684;2.50e-09;6!UBERON:0001178;2.50e-09;6!UBERON:0001013;5.43e-09;14!UBERON:0002199;2.21e-08;46!UBERON:0002416;2.21e-08;46!UBERON:0002097;3.80e-08;41!UBERON:0002384;9.35e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,3.71e-12,99;UBERON:0002199,4.09e-11,46;UBERON:0002416,4.09e-11,46;UBERON:0002097,6.20e-10,41;UBERON:0003688,2.63e-09,6;UBERON:0002358,2.63e-09,6;UBERON:0003684,2.63e-09,6;UBERON:0001178,2.63e-09,6;UBERON:0001013,3.41e-09,14;UBERON:0002384,2.84e-08,371;UBERON:0004457,4.25e-07,12;UBERON:0000042,4.25e-07,12 | |||
|phase1_expression=28.1601487869363,13.274232481241,21.8479326348755,7.00513088471913,12.0679495495368,1.74467704820074,7.59899634504932,0,1.82829939739887,0,0,0.436882744260345,0,0.74259811776028,2.65117900582333,0.672325146451775,0,0,0,0.369363174230364,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,7.37770945674,0.639312809217652,23.1321057526122,22.0588680679791,17.0918892373772,38.9690114055039,12.1658717575659,0.661743720148475,0.443458794925128,1.31752178539689,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0.436094052142534,10.933382937297,0.506522046658319,0.397227542439656,1.43418310374407,0.354668382198357,0,1.06748995729705,0.24666754841716,1.8672662123986,0.134710672069688,0.326923806226917,0.454072282934794,0,0.234321431833797,0,0,0,0,0.971237666208789,0.421352420106746,2.44985005505872,0.368502951935304,3.09977343527296,20.1960485737949,7.17074094907815,0,0,1.0100166837244,0.500474079487857,2.77064115484183,1.31693286264251,2.45190236639216,4.35690370829131,0.226864366320042,6.27863724911017,8.75585294156127,3.81477422087211,9.30282397861647,9.89304280689013,7.21393512127762,7.81690796592677,3.54430297706659,3.99491721160914,8.58274832429989,11.4141874316451,21.8222176705396,8.87523981291536,3.92933183087797,0.508681776931463,0.386521706326594,0.272746120590835,0.860413786167011,0,0,0,0.10366105501537,0,0,1.56449532329816,3.21620469096443,0,0,0,0.236613600079688,0.168584690078102,0.241011029883482,0.330881918197182,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,11.8530308241316,1.1240175325762,0.603173834469785,0.185176890317059,0,0,1.44331342025273,0.463721619900307,1.17408694235822,0,0,0.190254152234598,0.790204397959275,0,0,0,0,0.93733833986777,1.00789276919316,1.13420077793909,0.985143749731331,5.23141089325132,0.766765358330422,0,0,0,0,0,0,0,0,1.71072446022705,0,0.600686115687835,0,0.112131084345361,0,0.07333828582095,14.6077038806289,0,0,2.92531928243358,1.04007436911366,0,0,0,0.57191197463259,2.71310802695722,0,1.62868092146868,0.355391948742546,0,0,0.871533458600294,0.099972991182057,0,0,0,0,1.14861935834114,0,0.723906533337896,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08575535922538,0.500170521059677,0.271265023699736,2.28767947683888,1.60586089917446,1.10391690523754,3.27995961979597,11.1350056899256,25.0148254461583,2.0694614258501,0,1.29058417979192,1.04260337361699,0,0,0,0,0,0,0,0.604780586659361,30.2691525538908,16.4204311418227,14.0330047216537,14.8641413136613,15.3512174720011,10.9380666377653,7.42090332224955,0.616838775210622,1.77561725313127,1.88892458831761,3.11552657510173,1.04589340613963,0.241718899183244,2.40607764363942,0.0920809889358963,0.574072240823034,0.182091168006717,1.57349297951309,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0.270946437543853,0.501689773854853,0,0,0.223874754722178,0,0,0.769350375349168,0,0.325378394664303,0.309123034943167,4.2121953816438,5.28060799491763,1.72279661398852,3.25030123018261,3.21367859688319,0.96670718292122,0.462145851343933,1.07452572308291,0.137836572484531,1.18162269355101,1.30515024522806,0.511359764496605,8.19094727949984,0.165284915360978,0.192190067365106,0.127612712494584,0.2023155617111,0.464845549297286,2.20368642781448,0,0,1.06461206063404,0,0.37064843820784,0.286249773483982,0.744316738719335,0.632758849437452,0.571890581771475,0,0.855877976067841,0,0,0.539617372749944,0.54907405947211,1.06031162111118,0.202182481573316,0,0.421258456238981,0,0.243713489631284,0,1.36499911407986,4.66637925447252,2.26016233240486,0,1.32687795048244,0.438450885253763,0,0.655894752046633,0.202910376962704,0.30982349809975,0,0.573645408816206,0.687743287091848,0,2.48332744849418,11.6109199413715,7.90307743103764,0.379473173765715,1.04980416073495,0.288666338176536,0,0,0,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46508179271894,0,0,0,0.23874448473769,3.26661148915902,0.921482106297696,0,0,1.44701316529778,0,0.63337622438398,0.597743964753209,2.76283915531148,0,0.102268682502155,0,2.48831670129446,0.0898683511473268,0,0,0.591860433821602,0,0,0,0.185536196323703,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0,0,0.110579259931225,0.295547618953547,0,0,0.139423744278603,2.07765697960252,20.8513962200012,0,0.448788222048861,0,0.31900115973192,5.12946523050429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76915129006678,4.888241159469,0,0,0,0,0.802577647298789,0,0,0,0,0,3.62972148145992,0,1.0741718536843,0.150323419414493,0,0,0,0,0,0,0.416024019039416,0.347119476670262,1.27390116638691,0.0870592065804026,0.52418000472609,0.171986032471617,0.0967563312890851,0.146178634172371,0.164230914106418,0.775912131907355,0,2.93774963014692,0.27408384929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| 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| ||
|short_description=p5@COL12A1 | |short_description=p5@COL12A1 | ||
}} | }} |
Latest revision as of 20:31, 19 September 2015
Short description: | p5@COL12A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_COL12A1_5end |
Coexpression cluster: | NA |
Association with transcript: | -17bp_to_ENST00000416123_5end |
EntrezGene: | COL12A1 |
HGNC: | 2188 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.27e-16 | 76 |
preadipocyte | 4.19e-12 | 12 |
fat cell | 1.15e-10 | 15 |
skin fibroblast | 4.79e-09 | 23 |
connective tissue cell | 2.64e-08 | 361 |
mesenchymal cell | 4.13e-08 | 354 |
GAG secreting cell | 5.05e-08 | 9 |
carbohydrate secreting cell | 5.05e-08 | 9 |
somatic stem cell | 1.16e-07 | 433 |
multi fate stem cell | 2.33e-07 | 427 |
stem cell | 4.64e-07 | 441 |
chondroblast | 7.75e-07 | 6 |
chondrocyte | 7.75e-07 | 6 |
motile cell | 8.19e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
surface structure | 3.71e-12 | 99 |
integument | 4.09e-11 | 46 |
integumental system | 4.09e-11 | 46 |
skin of body | 6.20e-10 | 41 |
omentum | 2.63e-09 | 6 |
peritoneum | 2.63e-09 | 6 |
abdominal cavity | 2.63e-09 | 6 |
visceral peritoneum | 2.63e-09 | 6 |
adipose tissue | 3.41e-09 | 14 |
connective tissue | 2.84e-08 | 371 |
cavity lining | 4.25e-07 | 12 |
serous membrane | 4.25e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.31e-07 | 14 |
musculoskeletal system disease | 2.02e-07 | 5 |
myotonic disease | 2.02e-07 | 5 |
muscle tissue disease | 2.02e-07 | 5 |
myopathy | 2.02e-07 | 5 |
muscular disease | 2.02e-07 | 5 |
myotonic dystrophy | 2.02e-07 | 5 |