FFCP PHASE1:Hg19::chr2:109223595..109223610,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3987 | |EntrezGene=3987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6616 | |HGNC=6616 | ||
|TSSclassifier=strong | |||
|UniProt=P48059 | |UniProt=P48059 | ||
|association_with_transcript=-6bp_to_ENST00000410093,NM_001193482,uc002tei.2_5end | |association_with_transcript=-6bp_to_ENST00000410093,NM_001193482,uc002tei.2_5end | ||
|cluster_id=chr2:109223595..109223610,+ | |||
|coexpression_cluster_id=C86 | |||
|description=CAGE_peak_19_at_LIMS1_5end | |description=CAGE_peak_19_at_LIMS1_5end | ||
|id=chr2:109223595..109223610,+ | |id=chr2:109223595..109223610,+ | ||
|ontology_enrichment_celltype=CL:0000148!5.75e-15!10;CL:0000541!5.75e-15!10;CL:0000147!1.23e-10!14;CL:0002553!8.00e-08!1;CL:0000710!2.24e-07!20;CL:0002566!4.90e-07!1 | |ontology_enrichment_celltype=CL:0000148!5.75e-15!10;CL:0000541!5.75e-15!10;CL:0000147!1.23e-10!14;CL:0002553!8.00e-08!1;CL:0000710!2.24e-07!20;CL:0002566!4.90e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0002553;4.27e-34;1!CL:0002253;5.48e-18;2!CL:0002535;1.07e-17;2!CL:0002563;1.12e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,5.05e-34,1;CL:0002253,5.48e-18,2;CL:0002535,1.07e-17,2;CL:0002563,1.12e-09,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3371!1.72e-07!1;DOID:4549!1.72e-07!1;DOID:5861!1.72e-07!1;DOID:6496!1.72e-07!1;DOID:6193!1.95e-07!1;DOID:3119!2.14e-07!14 | |ontology_enrichment_disease=DOID:3371!1.72e-07!1;DOID:4549!1.72e-07!1;DOID:5861!1.72e-07!1;DOID:6496!1.72e-07!1;DOID:6193!1.95e-07!1;DOID:3119!2.14e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:1909;8.34e-18;2!DOID:3119;1.90e-10;14!DOID:4362;7.01e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,7.67e-18,2;DOID:3119,1.90e-10,14;DOID:4362,7.01e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000998!1.42e-07!1;UBERON:0006868!1.42e-07!1;UBERON:0002146!2.50e-07!1;UBERON:0005623!2.50e-07!1;UBERON:0006834!3.62e-07!1 | |ontology_enrichment_uberon=UBERON:0000998!1.42e-07!1;UBERON:0006868!1.42e-07!1;UBERON:0002146!2.50e-07!1;UBERON:0005623!2.50e-07!1;UBERON:0006834!3.62e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0006955;1.07e-17;2!UBERON:0004801;1.07e-17;2!UBERON:0001052;1.12e-09;4!UBERON:0001242;1.12e-09;4!UBERON:0001262;1.12e-09;4!UBERON:0004786;1.12e-09;4!UBERON:0004808;1.12e-09;4!UBERON:0001277;1.12e-09;4!UBERON:0004907;5.35e-08;5!UBERON:0000945;7.49e-08;5!UBERON:0010039;7.49e-08;5!UBERON:0000002;8.97e-07;6!UBERON:0001560;8.97e-07;6!UBERON:0005409;9.95e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,1.07e-17,2;UBERON:0004801,1.07e-17,2;UBERON:0001052,1.12e-09,4;UBERON:0001242,1.12e-09,4;UBERON:0001262,1.12e-09,4;UBERON:0004786,1.12e-09,4;UBERON:0004808,1.12e-09,4;UBERON:0001277,1.12e-09,4;UBERON:0004907,5.35e-08,5;UBERON:0000002,8.97e-07,6;UBERON:0001560,8.97e-07,6 | |||
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|short_description=p19@LIMS1 | |short_description=p19@LIMS1 | ||
}} | }} |
Latest revision as of 06:30, 16 September 2015
Short description: | p19@LIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_LIMS1_5end |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | -6bp_to_ENST00000410093, NM_001193482, uc002tei.2_5end |
EntrezGene: | LIMS1 |
HGNC: | 6616 |
UniProt: | P48059 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 5.05e-34 | 1 |
epithelial cell of large intestine | 5.48e-18 | 2 |
epithelial cell of cervix | 1.07e-17 | 2 |
intestinal epithelial cell | 1.12e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 1.07e-17 | 2 |
cervix epithelium | 1.07e-17 | 2 |
rectum | 1.12e-09 | 4 |
intestinal mucosa | 1.12e-09 | 4 |
wall of intestine | 1.12e-09 | 4 |
gastrointestinal system mucosa | 1.12e-09 | 4 |
gastrointestinal system epithelium | 1.12e-09 | 4 |
intestinal epithelium | 1.12e-09 | 4 |
lower digestive tract | 5.35e-08 | 5 |
uterine cervix | 8.97e-07 | 6 |
neck of organ | 8.97e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
melanoma | 7.67e-18 | 2 |
gastrointestinal system cancer | 1.90e-10 | 14 |
cervical cancer | 7.01e-08 | 5 |