FFCP PHASE1:Hg19::chr2:128433033..128433085,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55679 | |EntrezGene=55679 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |HGNC=16084 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-173bp_to_ENST00000409808_5end | |association_with_transcript=-173bp_to_ENST00000409808_5end | ||
|cluster_id=chr2:128433033..128433085,- | |||
|coexpression_cluster_id=C3179 | |||
|description=CAGE_peak_2_at_LIMS2_5end | |description=CAGE_peak_2_at_LIMS2_5end | ||
|id=chr2:128433033..128433085,- | |id=chr2:128433033..128433085,- | ||
|ontology_enrichment_celltype=CL:0000222!1.17e-08!119;CL:0000055!3.44e-08!180;CL:0000057!1.65e-07!75;CL:0000213!4.98e-07!57;CL:0000215!4.98e-07!57 | |ontology_enrichment_celltype=CL:0000222!1.17e-08!119;CL:0000055!3.44e-08!180;CL:0000057!1.65e-07!75;CL:0000213!4.98e-07!57;CL:0000215!4.98e-07!57 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000213,8.95e-07,58;CL:0000215,8.95e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!4.32e-18!241;UBERON:0000477!5.83e-18!286;UBERON:0007023!1.30e-16!115;UBERON:0000468!4.01e-15!659;UBERON:0000025!5.19e-15!194;UBERON:0000475!2.15e-13!365;UBERON:0000467!2.25e-13!625;UBERON:0000480!3.88e-13!626;UBERON:0000481!6.83e-13!347;UBERON:0003914!6.86e-13!118;UBERON:0004872!2.78e-12!84;UBERON:0000483!3.16e-12!309;UBERON:0000119!4.29e-12!312;UBERON:0005256!7.32e-10!143;UBERON:0000055!1.68e-09!69;UBERON:0002100!2.87e-09!216;UBERON:0000062!3.95e-09!511;UBERON:0001981!4.75e-09!60;UBERON:0007500!4.75e-09!60;UBERON:0004537!4.75e-09!60;UBERON:0006965!4.75e-09!60;UBERON:0002049!2.29e-08!79;UBERON:0007798!2.29e-08!79;UBERON:0002417!6.49e-08!61;UBERON:0000916!6.49e-08!61;UBERON:0003104!9.26e-08!238;UBERON:0009142!9.26e-08!238;UBERON:0000064!1.69e-07!219;UBERON:0003064!1.80e-07!37;UBERON:0003103!2.35e-07!69;UBERON:0000490!3.81e-07!138;UBERON:0001009!9.27e-07!113 | |ontology_enrichment_uberon=UBERON:0004111!4.32e-18!241;UBERON:0000477!5.83e-18!286;UBERON:0007023!1.30e-16!115;UBERON:0000468!4.01e-15!659;UBERON:0000025!5.19e-15!194;UBERON:0000475!2.15e-13!365;UBERON:0000467!2.25e-13!625;UBERON:0000480!3.88e-13!626;UBERON:0000481!6.83e-13!347;UBERON:0003914!6.86e-13!118;UBERON:0004872!2.78e-12!84;UBERON:0000483!3.16e-12!309;UBERON:0000119!4.29e-12!312;UBERON:0005256!7.32e-10!143;UBERON:0000055!1.68e-09!69;UBERON:0002100!2.87e-09!216;UBERON:0000062!3.95e-09!511;UBERON:0001981!4.75e-09!60;UBERON:0007500!4.75e-09!60;UBERON:0004537!4.75e-09!60;UBERON:0006965!4.75e-09!60;UBERON:0002049!2.29e-08!79;UBERON:0007798!2.29e-08!79;UBERON:0002417!6.49e-08!61;UBERON:0000916!6.49e-08!61;UBERON:0003104!9.26e-08!238;UBERON:0009142!9.26e-08!238;UBERON:0000064!1.69e-07!219;UBERON:0003064!1.80e-07!37;UBERON:0003103!2.35e-07!69;UBERON:0000490!3.81e-07!138;UBERON:0001009!9.27e-07!113 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.63e-20,114;UBERON:0004111,1.61e-15,240;UBERON:0000025,1.38e-12,192;UBERON:0003914,6.79e-11,117;UBERON:0004872,9.37e-10,83;UBERON:0002417,2.78e-08,60;UBERON:0000916,2.78e-08,60;UBERON:0003064,2.94e-08,28;UBERON:0003104,9.12e-08,160;UBERON:0009142,9.12e-08,160;UBERON:0000055,1.29e-07,68;UBERON:0000483,1.52e-07,306;UBERON:0002100,3.32e-07,199;UBERON:0007500,3.92e-07,59;UBERON:0001981,3.92e-07,59;UBERON:0004537,3.92e-07,59;UBERON:0006965,3.92e-07,59;UBERON:0000119,4.14e-07,309;UBERON:0005256,4.53e-07,122;UBERON:0004876,7.82e-07,11 | |||
|phase1_expression=20.5296568575729,25.692062866918,22.5527046553554,33.024188456533,29.499432232201,33.148863915814,15.1979926900986,0.631719873426831,0,9.82935746006035,11.1648186875588,3.27662058195258,6.59417445571134,0,0,2.01697543935533,1.80808358407193,3.65155045193687,3.41552959153355,0.61560529038394,1.22400414746552,2.82109249330279,0.572471974262113,0.821246550437305,2.25976751270645,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0.217010870715852,0,0,0,0.145398238779565,0.755751887377619,0,0,0,0,0.28769239232215,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0,0,0.639337125799041,0,0,0,0,1.13477044938228,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,4.2194645408365,13.0118094858444,11.0294340339896,7.82171202388448,0.795285947051099,8.27279279514481,0.283604451492204,0.886917589850256,0.527008714158756,11.9190958702918,0,0,0,0,0,0,0,0,2.98143611050058,2.58070378531837,3.12426451446835,6.78369530308812,10.0679864690377,3.30141650328081,5.8518590630307,6.71883573840255,8.53839030448104,6.02497102976406,4.43112248820062,7.60272105718513,5.36936526605973,2.94130464276695,3.24056779152704,4.64358587077215,9.20570427767296,5.74318550464943,1.53316637465883,0.949265659568129,0.916008719652036,0,0,0,53.1759988313991,4.68532893158945,3.44263870114369,2.86836620748814,3.54668382198357,12.8955848032731,19.2148192313469,12.0867098724408,0.933633106199299,0.942974704487816,0.653847612453835,1.36221684880438,0.576175924479999,0,0,0.570471821544449,0,0.117434498643765,0.485618833104395,0,0,0.122834317311768,0.103325781175765,2.37600571456411,13.5996811103206,10.0117749813183,5.03032699271367,0.673344455816265,0.250237039743928,1.10825646193673,8.77955241761676,15.937365381549,15.3242820084729,1.24775401476023,7.5343646989322,23.4913127700424,13.7755735753715,3.00091096084402,8.86251751450575,14.1702297025096,17.681101351501,4.38818463827292,18.1232829599829,8.58274832429989,15.9246324651178,8.40559495457822,10.6502877754984,17.2286087969265,11.8692414617341,0.193260853163297,0,0,0.853815942907168,0.530119073285941,0.580969714347592,0.414644220061482,0,0.72995471815166,4.69348596989448,13.5080597020506,13.8134921352481,0,0,1.30137480043828,1.34867752062481,1.44606617930089,1.43382164552112,1.08939722046203,0.474541238222193,1.48314438976181,0.588664395376038,0.38474715694639,28.0499072757366,14.0241773803446,11.9356463286106,8.82052268313252,1.26755034821831,4.91413608338813,4.13552934676983,0,1.10689594688802,0,0,0,0,0.370353780634118,0.325808305310325,0,0,0.115930404975077,5.63561732331944,2.45422961193825,0,0.951270761172991,0,0,0,0,0,0.93733833986777,2.18376766658517,0.141775097242386,0,0,0,0,0,0.414656231081544,0,0,0,2.29193055334967,0,0,0.719792448923265,0.600686115687835,0.285826432630578,0.448524337381443,0.87192013766656,0.22001485746285,5.68795549334222,7.15312891703765,0,27.1256878916568,22.8816361205005,0,0,0,10.1514375497285,4.88359444852299,0,0.65147236858747,8.17401482107855,0,0.904318131178758,7.84380112740265,5.99837947092342,0,0,0,15.8152404624445,31.0127226752108,0,4.77778312003011,0,0.358121926479791,0,0,0,0,0.76228387266739,0,0,0,1.27587750330633,0,0,0,0,0,0,52.4086571057634,30.868215061909,38.0062820231783,31.042474973069,5.11608369537122,2.27407504055985,3.10419213877515,2.65690239414175,4.42486004500088,2.95404289191482,0.195801157462741,5.83343820478455,0.206768026122887,0,0,1.81876542867756,4.99306318531491,1.5119514666484,12.4053903909388,18.7223607411436,38.169772842898,13.5827498211043,38.8897509290695,33.618469519014,29.6836132889982,0.154209693802656,0.710246901252508,0.574890092096664,0,0.464841513839837,0.846016147141356,1.60405176242628,0.0920809889358963,4.47776347841966,3.64182336013434,14.0303124006584,2.25599806453706,1.38627606787947,1.56869953835371,4.38417673959782,0.949964660035881,23.8840106548883,7.82431044271972,2.80690690932781,33.9299955918637,3.79325012561394,10.5354852509519,0.254876273045038,2.49322802678617,0.223874754722178,0,0,0.256450125116389,0.656029291399411,0.976135183992909,10.3041011647722,3.02179233900533,3.13536099698234,0.574265537996172,0,19.2820715812991,0.676695028044854,0.308097234229289,0.460511024178389,1.24052915236078,0.214840489736547,0.580066775656914,1.19317278382541,11.3070685271356,0,0.768760269460425,0.127612712494584,0.10115778085555,6.507837690162,1.5740617341532,0,0,1.06461206063404,0.869932992075073,2.96518750566272,0.858749320451947,0,2.84741482246853,7.05331717518152,3.83846686967001,0.42793898803392,0.636406495851874,3.92474320099615,6.65528093058265,4.11805544604082,2.5918728516051,1.81964233415984,0,0.842516912477962,5.36397112998549,0.974853958525138,4.22600587027022,8.5994944187031,2.68670320712054,2.26016233240486,0.551365343546124,1.99031692572366,7.45366504931397,0.578775534266688,0.655894752046633,13.5949952565012,5.88664646389525,2.53526042279017,0.717056761020258,5.4036972557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|phase1_expression=20.5296568575729,25.692062866918,22.5527046553554,33.024188456533,29.499432232201,33.148863915814,15.1979926900986,0.631719873426831,0,9.82935746006035,11.1648186875588,3.27662058195258,6.59417445571134,0,0,2.01697543935533,1.80808358407193,3.65155045193687,3.41552959153355,0.61560529038394,1.22400414746552,2.82109249330279,0.572471974262113,0.821246550437305,2.25976751270645,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0.217010870715852,0,0,0,0.145398238779565,0.755751887377619,0,0,0,0,0.28769239232215,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0,0,0.639337125799041,0,0,0,0,1.13477044938228,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,4.2194645408365,13.0118094858444,11.0294340339896,7.82171202388448,0.795285947051099,8.27279279514481,0.283604451492204,0.886917589850256,0.527008714158756,11.9190958702918,0,0,0,0,0,0,0,0,2.98143611050058,2.58070378531837,3.12426451446835,6.78369530308812,10.0679864690377,3.30141650328081,5.8518590630307,6.71883573840255,8.53839030448104,6.02497102976406,4.43112248820062,7.60272105718513,5.36936526605973,2.94130464276695,3.24056779152704,4.64358587077215,9.20570427767296,5.74318550464943,1.53316637465883,0.949265659568129,0.916008719652036,0,0,0,53.1759988313991,4.68532893158945,3.44263870114369,2.86836620748814,3.54668382198357,12.8955848032731,19.2148192313469,12.0867098724408,0.933633106199299,0.942974704487816,0.653847612453835,1.36221684880438,0.576175924479999,0,0,0.570471821544449,0,0.117434498643765,0.485618833104395,0,0,0.122834317311768,0.103325781175765,2.37600571456411,13.5996811103206,10.0117749813183,5.03032699271367,0.673344455816265,0.250237039743928,1.10825646193673,8.77955241761676,15.937365381549,15.3242820084729,1.24775401476023,7.5343646989322,23.4913127700424,13.7755735753715,3.00091096084402,8.86251751450575,14.1702297025096,17.681101351501,4.38818463827292,18.1232829599829,8.58274832429989,15.9246324651178,8.40559495457822,10.6502877754984,17.2286087969265,11.8692414617341,0.193260853163297,0,0,0.853815942907168,0.530119073285941,0.580969714347592,0.414644220061482,0,0.72995471815166,4.69348596989448,13.5080597020506,13.8134921352481,0,0,1.30137480043828,1.34867752062481,1.44606617930089,1.43382164552112,1.08939722046203,0.474541238222193,1.48314438976181,0.588664395376038,0.38474715694639,28.0499072757366,14.0241773803446,11.9356463286106,8.82052268313252,1.26755034821831,4.91413608338813,4.13552934676983,0,1.10689594688802,0,0,0,0,0.370353780634118,0.325808305310325,0,0,0.115930404975077,5.63561732331944,2.45422961193825,0,0.951270761172991,0,0,0,0,0,0.93733833986777,2.18376766658517,0.141775097242386,0,0,0,0,0,0.414656231081544,0,0,0,2.29193055334967,0,0,0.719792448923265,0.600686115687835,0.285826432630578,0.448524337381443,0.87192013766656,0.22001485746285,5.68795549334222,7.15312891703765,0,27.1256878916568,22.8816361205005,0,0,0,10.1514375497285,4.88359444852299,0,0.65147236858747,8.17401482107855,0,0.904318131178758,7.84380112740265,5.99837947092342,0,0,0,15.8152404624445,31.0127226752108,0,4.77778312003011,0,0.358121926479791,0,0,0,0,0.76228387266739,0,0,0,1.27587750330633,0,0,0,0,0,0,52.4086571057634,30.868215061909,38.0062820231783,31.042474973069,5.11608369537122,2.27407504055985,3.10419213877515,2.65690239414175,4.42486004500088,2.95404289191482,0.195801157462741,5.83343820478455,0.206768026122887,0,0,1.81876542867756,4.99306318531491,1.5119514666484,12.4053903909388,18.7223607411436,38.169772842898,13.5827498211043,38.8897509290695,33.618469519014,29.6836132889982,0.154209693802656,0.710246901252508,0.574890092096664,0,0.464841513839837,0.846016147141356,1.60405176242628,0.0920809889358963,4.47776347841966,3.64182336013434,14.0303124006584,2.25599806453706,1.38627606787947,1.56869953835371,4.38417673959782,0.949964660035881,23.8840106548883,7.82431044271972,2.80690690932781,33.9299955918637,3.79325012561394,10.5354852509519,0.254876273045038,2.49322802678617,0.223874754722178,0,0,0.256450125116389,0.656029291399411,0.976135183992909,10.3041011647722,3.02179233900533,3.13536099698234,0.574265537996172,0,19.2820715812991,0.676695028044854,0.308097234229289,0.460511024178389,1.24052915236078,0.214840489736547,0.580066775656914,1.19317278382541,11.3070685271356,0,0.768760269460425,0.127612712494584,0.10115778085555,6.507837690162,1.5740617341532,0,0,1.06461206063404,0.869932992075073,2.96518750566272,0.858749320451947,0,2.84741482246853,7.05331717518152,3.83846686967001,0.42793898803392,0.636406495851874,3.92474320099615,6.65528093058265,4.11805544604082,2.5918728516051,1.81964233415984,0,0.842516912477962,5.36397112998549,0.974853958525138,4.22600587027022,8.5994944187031,2.68670320712054,2.26016233240486,0.551365343546124,1.99031692572366,7.45366504931397,0.578775534266688,0.655894752046633,13.5949952565012,5.88664646389525,2.53526042279017,0.717056761020258,5.4036972557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| ||
|short_description=p2@LIMS2 | |short_description=p2@LIMS2 | ||
}} | }} |
Latest revision as of 21:10, 16 September 2015
Short description: | p2@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LIMS2_5end |
Coexpression cluster: | C3179_smooth_aorta_heart_vagina_umbilical_bladder_left |
Association with transcript: | -173bp_to_ENST00000409808_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 8.95e-07 | 58 |
barrier cell | 8.95e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.63e-20 | 114 |
anatomical conduit | 1.61e-15 | 240 |
tube | 1.38e-12 | 192 |
epithelial tube | 6.79e-11 | 117 |
splanchnic layer of lateral plate mesoderm | 9.37e-10 | 83 |
abdominal segment of trunk | 2.78e-08 | 60 |
abdomen | 2.78e-08 | 60 |
intermediate mesoderm | 2.94e-08 | 28 |
mesenchyme | 9.12e-08 | 160 |
entire embryonic mesenchyme | 9.12e-08 | 160 |
vessel | 1.29e-07 | 68 |
epithelium | 1.52e-07 | 306 |
trunk | 3.32e-07 | 199 |
epithelial tube open at both ends | 3.92e-07 | 59 |
blood vessel | 3.92e-07 | 59 |
blood vasculature | 3.92e-07 | 59 |
vascular cord | 3.92e-07 | 59 |
cell layer | 4.14e-07 | 309 |
trunk mesenchyme | 4.53e-07 | 122 |
urogenital ridge | 7.82e-07 | 11 |