FFCP PHASE1:Hg19::chr4:15937680..15937694,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:15937680..15937694,+ | |||
|description=CAGE_peak_at_chr4:15937680..15937694,+ | |description=CAGE_peak_at_chr4:15937680..15937694,+ | ||
|id=chr4:15937680..15937694,+ | |id=chr4:15937680..15937694,+ | ||
|ontology_enrichment_celltype=CL:0002076!3.16e-22!43;CL:0000223!2.74e-15!59;CL:0000066!4.69e-15!254;CL:0002251!6.52e-14!21;CL:0000575!5.21e-11!2;CL:0000076!1.24e-10!62;CL:0002159!1.63e-09!13;CL:0000240!2.74e-08!6;CL:0000311!2.74e-08!6;CL:0000079!2.74e-08!6;CL:0000237!2.74e-08!6;CL:0000036!2.74e-08!6;CL:0000357!2.74e-08!6;CL:0000114!2.74e-08!6;CL:0002621!7.21e-08!3;CL:0002328!1.81e-07!3;CL:0002231!4.01e-07!3 | |ontology_enrichment_celltype=CL:0002076!3.16e-22!43;CL:0000223!2.74e-15!59;CL:0000066!4.69e-15!254;CL:0002251!6.52e-14!21;CL:0000575!5.21e-11!2;CL:0000076!1.24e-10!62;CL:0002159!1.63e-09!13;CL:0000240!2.74e-08!6;CL:0000311!2.74e-08!6;CL:0000079!2.74e-08!6;CL:0000237!2.74e-08!6;CL:0000036!2.74e-08!6;CL:0000357!2.74e-08!6;CL:0000114!2.74e-08!6;CL:0002621!7.21e-08!3;CL:0002328!1.81e-07!3;CL:0002231!4.01e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002621;1.71e-14;3!CL:0000244;3.26e-11;4!CL:0002327;3.26e-11;4!CL:0000731;3.26e-11;4!CL:0000312;2.53e-09;5!CL:0000240;5.54e-08;6!CL:0000311;5.54e-08;6!CL:0000079;5.54e-08;6!CL:0000237;5.54e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,1.60e-14,3;CL:0000244,2.80e-11,4;CL:0000731,2.80e-11,4;CL:0002327,3.42e-11,4;CL:0000312,2.53e-09,5;CL:0000240,5.54e-08,6;CL:0000311,5.54e-08,6;CL:0000079,5.54e-08,6;CL:0000237,5.54e-08,6;CL:0000036,5.54e-08,6;CL:0000357,5.54e-08,6;CL:0000114,5.54e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000357;5.54e-08;6!CL:0000114;5.54e-08;6 | |||
|ontology_enrichment_disease=DOID:1749!6.52e-21!14;DOID:305!5.15e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:3151;1.81e-40;1!DOID:3149;1.81e-40;1!DOID:3451;5.15e-21;2!DOID:4159;5.15e-21;2!DOID:0060122;5.15e-21;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,3.30e-40,1;DOID:3149,3.30e-40,1;DOID:3451,6.96e-21,2;DOID:4159,6.96e-21,2;DOID:0060122,6.96e-21,2 | |||
|ontology_enrichment_uberon=UBERON:0003729!3.81e-16!5;UBERON:0003343!9.89e-12!4;UBERON:0004785!9.89e-12!4;UBERON:0000161!1.15e-09!35;UBERON:0004119!1.19e-09!169;UBERON:0000925!1.19e-09!169;UBERON:0006595!1.19e-09!169;UBERON:0001007!1.06e-08!155;UBERON:0001555!1.06e-08!155;UBERON:0007026!1.06e-08!155;UBERON:0001004!1.34e-08!72;UBERON:0003102!2.27e-08!95;UBERON:0000166!5.64e-08!21;UBERON:0001949!7.21e-08!3;UBERON:0000165!8.14e-08!28;UBERON:0000930!8.14e-08!28;UBERON:0004815!1.81e-07!3;UBERON:0002031!1.81e-07!3;UBERON:0001444!7.61e-07!48;UBERON:0000344!9.17e-07!12 | |ontology_enrichment_uberon=UBERON:0003729!3.81e-16!5;UBERON:0003343!9.89e-12!4;UBERON:0004785!9.89e-12!4;UBERON:0000161!1.15e-09!35;UBERON:0004119!1.19e-09!169;UBERON:0000925!1.19e-09!169;UBERON:0006595!1.19e-09!169;UBERON:0001007!1.06e-08!155;UBERON:0001555!1.06e-08!155;UBERON:0007026!1.06e-08!155;UBERON:0001004!1.34e-08!72;UBERON:0003102!2.27e-08!95;UBERON:0000166!5.64e-08!21;UBERON:0001949!7.21e-08!3;UBERON:0000165!8.14e-08!28;UBERON:0000930!8.14e-08!28;UBERON:0004815!1.81e-07!3;UBERON:0002031!1.81e-07!3;UBERON:0001444!7.61e-07!48;UBERON:0000344!9.17e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.71e-14;3!UBERON:0000486;3.36e-14;12!UBERON:0000014;3.26e-11;4!UBERON:0001911;3.26e-11;4!UBERON:0000365;3.10e-09;5!UBERON:0005910;6.55e-08;6!UBERON:0003929;5.86e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.60e-14,3;UBERON:0001911,3.42e-11,4;UBERON:0005333,3.42e-11,4;UBERON:0008425,3.42e-11,4;UBERON:0005311,3.42e-11,4;UBERON:0000014,3.79e-11,4;UBERON:0000365,2.74e-09,5;UBERON:0005910,5.92e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54608682530637,0,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0.110293972732394,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.878002283269004,0,3.61904300681871,0.648119116109707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283550194484773,0.0895585227028483,1.45316969256981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0,0,1.68471475667626,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748562161632879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.694238953340524,0.0979923974143777,0.174118413160805,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34173875039706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.825788063434183,0.550285795565037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0.217716747896961,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54608682530637,0,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0.110293972732394,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.878002283269004,0,3.61904300681871,0.648119116109707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283550194484773,0.0895585227028483,1.45316969256981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0,0,1.68471475667626,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748562161632879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.694238953340524,0.0979923974143777,0.174118413160805,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34173875039706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.825788063434183,0.550285795565037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0.217716747896961,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr4:15937680..15937694,+ | |short_description=p@chr4:15937680..15937694,+ | ||
}} | }} |
Latest revision as of 02:47, 30 July 2015
Short description: | p@chr4:15937680..15937694, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:15937680..15937694, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 1.60e-14 | 3 |
transitional epithelial cell | 2.80e-11 | 4 |
urothelial cell | 2.80e-11 | 4 |
mammary gland epithelial cell | 3.42e-11 | 4 |
keratinocyte | 2.53e-09 | 5 |
stratified squamous epithelial cell | 5.54e-08 | 6 |
keratin accumulating cell | 5.54e-08 | 6 |
stratified epithelial cell | 5.54e-08 | 6 |
keratinizing barrier epithelial cell | 5.54e-08 | 6 |
epithelial fate stem cell | 5.54e-08 | 6 |
stratified epithelial stem cell | 5.54e-08 | 6 |
surface ectodermal cell | 5.54e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.60e-14 | 3 |
mammary gland | 3.42e-11 | 4 |
mammary bud | 3.42e-11 | 4 |
mammary ridge | 3.42e-11 | 4 |
mammary placode | 3.42e-11 | 4 |
zone of skin | 3.79e-11 | 4 |
urothelium | 2.74e-09 | 5 |
transitional epithelium | 5.92e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 3.30e-40 | 1 |
keratoacanthoma | 3.30e-40 | 1 |
skin carcinoma | 6.96e-21 | 2 |
skin cancer | 6.96e-21 | 2 |
integumentary system cancer | 6.96e-21 | 2 |