FFCP PHASE1:Hg19::chr7:63560612..63560634,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=42320 | |HGNC=42320 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-48bp_to_ENST00000438529_5end | |association_with_transcript=-48bp_to_ENST00000438529_5end | ||
|cluster_id=chr7:63560612..63560634,+ | |||
|coexpression_cluster_id=C128 | |||
|description=CAGE_peak_1_at_GUSBP6_5end | |description=CAGE_peak_1_at_GUSBP6_5end | ||
|id=chr7:63560612..63560634,+ | |id=chr7:63560612..63560634,+ | ||
|ontology_enrichment_celltype=CL:0000039!3.20e-12!7;CL:0000586!3.20e-12!7;CL:0002242!2.16e-10!1;CL:0000228!2.16e-10!1;CL:0002372!2.16e-10!1 | |ontology_enrichment_celltype=CL:0000039!3.20e-12!7;CL:0000586!3.20e-12!7;CL:0002242!2.16e-10!1;CL:0000228!2.16e-10!1;CL:0002372!2.16e-10!1 | ||
|ontology_enrichment_celltype_v019=CL:0000228;5.12e-50;1!CL:0002372;5.12e-50;1!CL:0000039;2.74e-29;7!CL:0000586;2.74e-29;7!CL:0000056;1.21e-13;4!CL:0000737;1.21e-13;4!CL:0000680;2.26e-08;7!CL:0000188;8.61e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000228,6.58e-50,1;CL:0002372,6.58e-50,1;CL:0000039,2.74e-29,7;CL:0000586,2.74e-29,7;CL:0000737,1.29e-13,4;CL:0000515,1.29e-13,4;CL:0000188,8.85e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.50e-45;10!UBERON:0005564;4.50e-45;10!CL:0000515;1.21e-13;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;4.14e-10;22!DOID:2994;4.14e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.14e-10,22;DOID:2994,4.14e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.07e-27!8;UBERON:0003135!3.93e-20!11;UBERON:0000991!1.74e-10!21;UBERON:0009196!1.74e-10!21;UBERON:0009117!1.74e-10!21;UBERON:0005564!1.74e-10!21;UBERON:0004176!5.32e-10!22;UBERON:0003101!5.32e-10!22;UBERON:0000079!5.32e-10!22;UBERON:0007190!1.07e-09!1 | |ontology_enrichment_uberon=UBERON:0000473!1.07e-27!8;UBERON:0003135!3.93e-20!11;UBERON:0000991!1.74e-10!21;UBERON:0009196!1.74e-10!21;UBERON:0009117!1.74e-10!21;UBERON:0005564!1.74e-10!21;UBERON:0004176!5.32e-10!22;UBERON:0003101!5.32e-10!22;UBERON:0000079!5.32e-10!22;UBERON:0007190!1.07e-09!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;5.02e-56;8!UBERON:0003135;4.36e-41;11!UBERON:0000991;4.59e-22;21!UBERON:0003101;4.13e-21;22!UBERON:0000079;4.13e-21;22!UBERON:0002323;6.10e-09;45!UBERON:0003133;9.01e-08;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,4.57e-56,8;UBERON:0003135,4.07e-41,11;UBERON:0000991,4.43e-22,21;UBERON:0009196,4.43e-22,21;UBERON:0009117,4.43e-22,21;UBERON:0005564,4.43e-22,21;UBERON:0004176,3.99e-21,22;UBERON:0003101,3.99e-21,22;UBERON:0000079,3.99e-21,22;UBERON:0002323,1.31e-10,46;UBERON:0003133,3.32e-10,48;UBERON:0004458,5.14e-10,49;UBERON:0003886,3.61e-09,54;UBERON:0005156,1.83e-08,59;UBERON:0000990,1.83e-08,59;UBERON:0002553,3.25e-08,61 | |||
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|short_description=p1@GUSBP6 | |short_description=p1@GUSBP6 | ||
}} | }} |
Latest revision as of 04:14, 19 September 2015
Short description: | p1@GUSBP6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GUSBP6_5end |
Coexpression cluster: | C128_testicular_choriocarcinoma_H9_teratocarcinoma_pancreatic_iPS_HES3GFP |
Association with transcript: | -48bp_to_ENST00000438529_5end |
EntrezGene: | NA |
HGNC: | 42320 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multinucleate cell | 6.58e-50 | 1 |
myotube | 6.58e-50 | 1 |
germ line cell | 2.74e-29 | 7 |
germ cell | 2.74e-29 | 7 |
striated muscle cell | 1.29e-13 | 4 |
skeletal muscle myoblast | 1.29e-13 | 4 |
cell of skeletal muscle | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
testis | 4.57e-56 | 8 |
male reproductive organ | 4.07e-41 | 11 |
gonad | 4.43e-22 | 21 |
indifferent external genitalia | 4.43e-22 | 21 |
indifferent gonad | 4.43e-22 | 21 |
gonad primordium | 4.43e-22 | 21 |
external genitalia | 3.99e-21 | 22 |
male organism | 3.99e-21 | 22 |
male reproductive system | 3.99e-21 | 22 |
body cavity | 1.31e-10 | 46 |
reproductive organ | 3.32e-10 | 48 |
body cavity or lining | 5.14e-10 | 49 |
body cavity precursor | 3.61e-09 | 54 |
reproductive structure | 1.83e-08 | 59 |
reproductive system | 1.83e-08 | 59 |
anatomical cavity | 3.25e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.14e-10 | 22 |
germ cell cancer | 4.14e-10 | 22 |