FFCP PHASE1:Hg19::chr4:7755797..7755812,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84740 | |EntrezGene=84740 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=28141 | |HGNC=28141 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-4bp_to_NR_026892,uc003gkd.3_5end | |association_with_transcript=-4bp_to_NR_026892,uc003gkd.3_5end | ||
|cluster_id=chr4:7755797..7755812,+ | |||
|description=CAGE_peak_1_at_AFAP1-AS1_5end | |description=CAGE_peak_1_at_AFAP1-AS1_5end | ||
|id=chr4:7755797..7755812,+ | |id=chr4:7755797..7755812,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000945;5.49e-09;24!CL:0002549;3.10e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,4.81e-09,24;CL:0000826,4.81e-09,24;CL:0002549,3.61e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!6.49e-10!235;DOID:14566!2.36e-09!239;DOID:2531!6.81e-08!51;DOID:0060083!6.81e-08!51;DOID:0050686!4.42e-07!137 | |ontology_enrichment_disease=DOID:162!6.49e-10!235;DOID:14566!2.36e-09!239;DOID:2531!6.81e-08!51;DOID:0060083!6.81e-08!51;DOID:0050686!4.42e-07!137 | ||
|ontology_enrichment_disease_v019=DOID:1749;5.72e-10;14!DOID:3910;1.36e-09;2!DOID:3493;2.09e-09;2!DOID:4929;2.41e-09;2!DOID:3908;2.68e-08;5!DOID:299;3.41e-07;25!DOID:1324;8.18e-07;15 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.17e-14,235;DOID:14566,3.54e-14,239;DOID:305,3.05e-13,106;DOID:0050687,1.47e-11,143;DOID:1749,5.77e-10,14;DOID:3910,1.36e-09,2;DOID:3493,2.05e-09,2;DOID:4929,2.41e-09,2;DOID:3908,2.68e-08,5;DOID:0050686,1.04e-07,137;DOID:299,3.41e-07,25;DOID:1324,8.19e-07,15 | |||
|ontology_enrichment_uberon=UBERON:0002616!2.15e-12!59;UBERON:0000955!8.94e-12!69;UBERON:0006238!8.94e-12!69;UBERON:0002780!1.83e-11!41;UBERON:0001890!1.83e-11!41;UBERON:0006240!1.83e-11!41;UBERON:0003080!4.80e-11!42;UBERON:0001049!9.35e-11!57;UBERON:0005068!9.35e-11!57;UBERON:0006241!9.35e-11!57;UBERON:0007135!9.35e-11!57;UBERON:0001017!4.73e-10!82;UBERON:0005743!5.13e-10!86;UBERON:0001893!1.10e-09!34;UBERON:0001869!1.89e-09!32;UBERON:0002791!4.48e-09!33;UBERON:0007023!8.74e-09!115;UBERON:0002020!1.04e-08!34;UBERON:0003528!1.04e-08!34;UBERON:0000073!3.16e-08!94;UBERON:0001016!3.16e-08!94;UBERON:0002619!3.39e-08!22;UBERON:0003075!6.54e-08!86;UBERON:0007284!6.54e-08!86;UBERON:0001950!6.75e-08!20;UBERON:0002346!8.42e-08!90;UBERON:0003056!2.92e-07!61;UBERON:0000153!3.12e-07!129;UBERON:0007811!3.12e-07!129;UBERON:0000033!6.69e-07!123;UBERON:0000956!7.39e-07!25;UBERON:0000203!7.39e-07!25 | |ontology_enrichment_uberon=UBERON:0002616!2.15e-12!59;UBERON:0000955!8.94e-12!69;UBERON:0006238!8.94e-12!69;UBERON:0002780!1.83e-11!41;UBERON:0001890!1.83e-11!41;UBERON:0006240!1.83e-11!41;UBERON:0003080!4.80e-11!42;UBERON:0001049!9.35e-11!57;UBERON:0005068!9.35e-11!57;UBERON:0006241!9.35e-11!57;UBERON:0007135!9.35e-11!57;UBERON:0001017!4.73e-10!82;UBERON:0005743!5.13e-10!86;UBERON:0001893!1.10e-09!34;UBERON:0001869!1.89e-09!32;UBERON:0002791!4.48e-09!33;UBERON:0007023!8.74e-09!115;UBERON:0002020!1.04e-08!34;UBERON:0003528!1.04e-08!34;UBERON:0000073!3.16e-08!94;UBERON:0001016!3.16e-08!94;UBERON:0002619!3.39e-08!22;UBERON:0003075!6.54e-08!86;UBERON:0007284!6.54e-08!86;UBERON:0001950!6.75e-08!20;UBERON:0002346!8.42e-08!90;UBERON:0003056!2.92e-07!61;UBERON:0000153!3.12e-07!129;UBERON:0007811!3.12e-07!129;UBERON:0000033!6.69e-07!123;UBERON:0000956!7.39e-07!25;UBERON:0000203!7.39e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;1.36e-09;2!UBERON:0002173;1.36e-09;2!UBERON:0002186;1.36e-09;2!UBERON:0005629;3.10e-08;2!UBERON:0005358;3.10e-08;2!UBERON:0001886;3.10e-08;2!UBERON:0004086;3.10e-08;2!UBERON:0005282;3.10e-08;2!UBERON:0005281;3.10e-08;2!UBERON:0000058;6.09e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.36e-09,2;UBERON:0002173,1.36e-09,2;UBERON:0002186,1.36e-09,2;UBERON:0005629,3.61e-08,2;UBERON:0005358,3.61e-08,2;UBERON:0001886,3.61e-08,2;UBERON:0004086,3.61e-08,2;UBERON:0005282,3.61e-08,2;UBERON:0005281,3.61e-08,2 | |||
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|short_description=p1@AFAP1-AS1 | |short_description=p1@AFAP1-AS1 | ||
}} | }} |
Latest revision as of 18:06, 18 September 2015
Short description: | p1@AFAP1-AS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AFAP1-AS1_5end |
Coexpression cluster: | NA |
Association with transcript: | -4bp_to_NR_026892, uc003gkd.3_5end |
EntrezGene: | AFAP1-AS1 |
HGNC: | 28141 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 4.81e-09 | 24 |
pro-B cell | 4.81e-09 | 24 |
fibroblast of choroid plexus | 3.61e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.36e-09 | 2 |
alveolar duct | 1.36e-09 | 2 |
bronchiole | 1.36e-09 | 2 |
vascular plexus | 3.61e-08 | 2 |
ventricle of nervous system | 3.61e-08 | 2 |
choroid plexus | 3.61e-08 | 2 |
brain ventricle | 3.61e-08 | 2 |
ventricular system of brain | 3.61e-08 | 2 |
ventricular system of central nervous system | 3.61e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.17e-14 | 235 |
disease of cellular proliferation | 3.54e-14 | 239 |
carcinoma | 3.05e-13 | 106 |
cell type cancer | 1.47e-11 | 143 |
squamous cell carcinoma | 5.77e-10 | 14 |
lung adenocarcinoma | 1.36e-09 | 2 |
signet ring cell adenocarcinoma | 2.05e-09 | 2 |
tubular adenocarcinoma | 2.41e-09 | 2 |
non-small cell lung carcinoma | 2.68e-08 | 5 |
organ system cancer | 1.04e-07 | 137 |
adenocarcinoma | 3.41e-07 | 25 |
lung cancer | 8.19e-07 | 15 |