FFCP PHASE1:Hg19::chr3:130648968..130648983,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27032 | |EntrezGene=27032 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13211 | |HGNC=13211 | ||
|TSSclassifier=strong | |||
|UniProt=D6RGE9 | |UniProt=D6RGE9 | ||
|association_with_transcript=126bp_to_ENST00000508297_5end | |association_with_transcript=126bp_to_ENST00000508297_5end | ||
|cluster_id=chr3:130648968..130648983,+ | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_25_at_ATP2C1_5end | |description=CAGE_peak_25_at_ATP2C1_5end | ||
|id=chr3:130648968..130648983,+ | |id=chr3:130648968..130648983,+ | ||
|ontology_enrichment_celltype=CL:0000214!1.30e-08!3 | |ontology_enrichment_celltype=CL:0000214!1.30e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0000243;1.00e-12;15!CL:0000125;1.00e-12;15!CL:0000095;1.68e-11;17!CL:0002319;2.10e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,1.03e-12,15;CL:0000125,1.03e-12,15;CL:0000030,1.03e-12,15;CL:0000339,1.03e-12,15;CL:0000095,1.72e-11,17;CL:0000123,1.72e-11,17;CL:0002319,2.14e-08,25 | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.53e-66;3!UBERON:0006238;4.91e-19;10!CL:0000339;1.00e-12;15 | |||
|ontology_enrichment_disease=DOID:3093!2.12e-08!11;DOID:5409!8.61e-07!4 | |ontology_enrichment_disease=DOID:3093!2.12e-08!11;DOID:5409!8.61e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:3093;1.51e-17;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,1.57e-17,11 | |||
|ontology_enrichment_uberon=UBERON:0000966!1.04e-18!5;UBERON:0005388!1.04e-18!5;UBERON:0001802!1.04e-18!5;UBERON:0000007!2.32e-12!2;UBERON:0001875!3.62e-12!2;UBERON:0006514!3.62e-12!2;UBERON:0000970!1.12e-10!20;UBERON:0002104!3.35e-10!21;UBERON:0000020!2.28e-09!23;UBERON:0001032!5.28e-09!24;UBERON:0004456!5.28e-09!24;UBERON:0006915!1.30e-08!3;UBERON:0002018!1.30e-08!3;UBERON:0002217!1.30e-08!3;UBERON:0007616!1.30e-08!3;UBERON:0003296!8.14e-07!4;UBERON:0010133!8.14e-07!4 | |ontology_enrichment_uberon=UBERON:0000966!1.04e-18!5;UBERON:0005388!1.04e-18!5;UBERON:0001802!1.04e-18!5;UBERON:0000007!2.32e-12!2;UBERON:0001875!3.62e-12!2;UBERON:0006514!3.62e-12!2;UBERON:0000970!1.12e-10!20;UBERON:0002104!3.35e-10!21;UBERON:0000020!2.28e-09!23;UBERON:0001032!5.28e-09!24;UBERON:0004456!5.28e-09!24;UBERON:0006915!1.30e-08!3;UBERON:0002018!1.30e-08!3;UBERON:0002217!1.30e-08!3;UBERON:0007616!1.30e-08!3;UBERON:0003296!8.14e-07!4;UBERON:0010133!8.14e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;4.05e-40;5!UBERON:0005388;4.05e-40;5!UBERON:0001802;4.05e-40;5!UBERON:0000970;4.95e-23;20!UBERON:0002104;5.49e-22;21!UBERON:0000020;3.62e-20;23!UBERON:0001032;2.27e-19;24!UBERON:0004456;2.27e-19;24!UBERON:0000019;1.91e-11;19!UBERON:0000047;1.91e-11;19!UBERON:0004088;1.91e-11;19!UBERON:0010230;1.91e-11;19!UBERON:0001456;1.86e-10;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.17e-33,6;UBERON:0005388,1.17e-33,6;UBERON:0001802,1.17e-33,6;UBERON:0000970,5.49e-22,21;UBERON:0002104,5.49e-22,21;UBERON:0000020,2.27e-19,24;UBERON:0001032,2.27e-19,24;UBERON:0004456,2.27e-19,24;UBERON:0000019,6.30e-11,20;UBERON:0000047,6.30e-11,20;UBERON:0010312,6.30e-11,20;UBERON:0004088,6.30e-11,20;UBERON:0010230,6.30e-11,20;UBERON:0003072,6.30e-11,20;UBERON:0004128,6.30e-11,20;UBERON:0003071,6.30e-11,20;UBERON:0001456,4.96e-10,22;UBERON:0005085,2.05e-07,31 | |||
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|short_description=p25@ATP2C1 | |short_description=p25@ATP2C1 | ||
}} | }} |
Latest revision as of 19:18, 24 September 2015
Short description: | p25@ATP2C1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_25_at_ATP2C1_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | 126bp_to_ENST00000508297_5end |
EntrezGene: | ATP2C1 |
HGNC: | 13211 |
UniProt: | D6RGE9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 1.03e-12 | 15 |
glial cell | 1.03e-12 | 15 |
glioblast | 1.03e-12 | 15 |
glioblast (sensu Vertebrata) | 1.03e-12 | 15 |
neuron associated cell | 1.72e-11 | 17 |
neuron associated cell (sensu Vertebrata) | 1.72e-11 | 17 |
neural cell | 2.14e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
retina | 1.17e-33 | 6 |
photoreceptor array | 1.17e-33 | 6 |
posterior segment of eyeball | 1.17e-33 | 6 |
eye | 5.49e-22 | 21 |
visual system | 5.49e-22 | 21 |
sense organ | 2.27e-19 | 24 |
sensory system | 2.27e-19 | 24 |
entire sense organ system | 2.27e-19 | 24 |
camera-type eye | 6.30e-11 | 20 |
simple eye | 6.30e-11 | 20 |
immature eye | 6.30e-11 | 20 |
ocular region | 6.30e-11 | 20 |
eyeball of camera-type eye | 6.30e-11 | 20 |
optic cup | 6.30e-11 | 20 |
optic vesicle | 6.30e-11 | 20 |
eye primordium | 6.30e-11 | 20 |
face | 4.96e-10 | 22 |
ectodermal placode | 2.05e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 1.57e-17 | 11 |