FFCP PHASE1:Hg19::chr18:28898107..28898130,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1828 | |EntrezGene=1828 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3048 | |HGNC=3048 | ||
|TSSclassifier=strong | |||
|UniProt=Q02413 | |UniProt=Q02413 | ||
|association_with_transcript=55bp_to_ENST00000257192,NM_001942,uc002kwp.2_5end | |association_with_transcript=55bp_to_ENST00000257192,NM_001942,uc002kwp.2_5end | ||
|cluster_id=chr18:28898107..28898130,+ | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_1_at_DSG1_5end | |description=CAGE_peak_1_at_DSG1_5end | ||
|id=chr18:28898107..28898130,+ | |id=chr18:28898107..28898130,+ | ||
|ontology_enrichment_celltype=CL:0002159!5.65e-17!13;CL:0000622!1.26e-15!5;CL:0000154!5.96e-13!6;CL:0002077!5.03e-12!33;CL:0002623!3.44e-10!3;CL:0000362!2.18e-09!8;CL:0000150!1.73e-08!9;CL:0000240!5.50e-08!6;CL:0000311!5.50e-08!6;CL:0000079!5.50e-08!6;CL:0000237!5.50e-08!6;CL:0000036!5.50e-08!6;CL:0000357!5.50e-08!6;CL:0000114!5.50e-08!6;CL:0002251!1.45e-07!21;CL:0001014!1.99e-07!2;CL:0001016!1.99e-07!2;CL:0000317!4.00e-07!2;CL:1000448!4.00e-07!2;CL:0002308!4.00e-07!2;CL:0002140!4.00e-07!2;CL:0000575!6.26e-07!2 | |ontology_enrichment_celltype=CL:0002159!5.65e-17!13;CL:0000622!1.26e-15!5;CL:0000154!5.96e-13!6;CL:0002077!5.03e-12!33;CL:0002623!3.44e-10!3;CL:0000362!2.18e-09!8;CL:0000150!1.73e-08!9;CL:0000240!5.50e-08!6;CL:0000311!5.50e-08!6;CL:0000079!5.50e-08!6;CL:0000237!5.50e-08!6;CL:0000036!5.50e-08!6;CL:0000357!5.50e-08!6;CL:0000114!5.50e-08!6;CL:0002251!1.45e-07!21;CL:0001014!1.99e-07!2;CL:0001016!1.99e-07!2;CL:0000317!4.00e-07!2;CL:1000448!4.00e-07!2;CL:0002308!4.00e-07!2;CL:0002140!4.00e-07!2;CL:0000575!6.26e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000622;7.44e-24;5!CL:0000154;7.57e-20;6!CL:0002159;2.26e-15;14!CL:0002623;3.09e-15;3!CL:0000150;3.74e-13;9!CL:0000362;7.63e-13;9!CL:0001014;7.23e-11;2!CL:0001016;7.23e-11;2!CL:0000317;2.23e-10;2!CL:1000448;2.23e-10;2!CL:0002308;2.23e-10;2!CL:0002140;2.23e-10;2!CL:0000575;4.31e-10;2!CL:0002537;1.21e-09;5!CL:0000312;5.47e-09;5!CL:0002077;1.63e-08;34!CL:0000240;1.46e-07;6!CL:0000311;1.46e-07;6!CL:0000079;1.46e-07;6!CL:0000237;1.46e-07;6!CL:0002621;4.62e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000622,7.26e-24,5;CL:0000154,7.42e-20,6;CL:0002159,2.26e-15,14;CL:0002623,3.09e-15,3;CL:0000150,3.69e-13,9;CL:0000362,7.53e-13,9;CL:0001014,7.23e-11,2;CL:0001016,7.23e-11,2;CL:0000317,2.18e-10,2;CL:1000448,2.18e-10,2;CL:0002308,2.18e-10,2;CL:0002140,2.18e-10,2;CL:0000575,4.42e-10,2;CL:0002537,1.19e-09,5;CL:0002077,1.81e-09,34;CL:0000312,5.48e-09,5;CL:0000240,1.46e-07,6;CL:0000311,1.46e-07,6;CL:0000079,1.46e-07,6;CL:0000237,1.46e-07,6;CL:0000036,1.46e-07,6;CL:0000357,1.46e-07,6;CL:0000114,1.46e-07,6;CL:0002621,4.48e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000357;1.46e-07;6!CL:0000114;1.46e-07;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000166!6.52e-15!21;UBERON:0003408!1.67e-13!10;UBERON:0000165!1.71e-12!28;UBERON:0000930!1.71e-12!28;UBERON:0001044!2.81e-12!6;UBERON:0003293!2.81e-12!6;UBERON:0003294!2.81e-12!6;UBERON:0010047!2.81e-12!6;UBERON:0000167!2.81e-12!6;UBERON:0001444!4.86e-10!48;UBERON:0005631!6.64e-10!14;UBERON:0000158!6.64e-10!14;UBERON:0000078!1.65e-09!18;UBERON:0003102!2.11e-09!95;UBERON:0000161!5.57e-08!35;UBERON:0001004!1.86e-07!72;UBERON:0001042!2.29e-07!10;UBERON:0009145!2.29e-07!10;UBERON:0001003!2.35e-07!14;UBERON:0007376!2.35e-07!14;UBERON:0007383!2.35e-07!14;UBERON:0002419!4.00e-07!2;UBERON:0007771!4.00e-07!2;UBERON:0003297!4.00e-07!2;UBERON:0001821!4.00e-07!2;UBERON:0003487!4.00e-07!2;UBERON:0001820!4.00e-07!2;UBERON:0005089!4.00e-07!2;UBERON:0005088!4.00e-07!2;UBERON:0001987!4.82e-07!4;UBERON:0004340!4.82e-07!4;UBERON:0003124!5.96e-07!7;UBERON:0000478!6.47e-07!24 | |ontology_enrichment_uberon=UBERON:0000166!6.52e-15!21;UBERON:0003408!1.67e-13!10;UBERON:0000165!1.71e-12!28;UBERON:0000930!1.71e-12!28;UBERON:0001044!2.81e-12!6;UBERON:0003293!2.81e-12!6;UBERON:0003294!2.81e-12!6;UBERON:0010047!2.81e-12!6;UBERON:0000167!2.81e-12!6;UBERON:0001444!4.86e-10!48;UBERON:0005631!6.64e-10!14;UBERON:0000158!6.64e-10!14;UBERON:0000078!1.65e-09!18;UBERON:0003102!2.11e-09!95;UBERON:0000161!5.57e-08!35;UBERON:0001004!1.86e-07!72;UBERON:0001042!2.29e-07!10;UBERON:0009145!2.29e-07!10;UBERON:0001003!2.35e-07!14;UBERON:0007376!2.35e-07!14;UBERON:0007383!2.35e-07!14;UBERON:0002419!4.00e-07!2;UBERON:0007771!4.00e-07!2;UBERON:0003297!4.00e-07!2;UBERON:0001821!4.00e-07!2;UBERON:0003487!4.00e-07!2;UBERON:0001820!4.00e-07!2;UBERON:0005089!4.00e-07!2;UBERON:0005088!4.00e-07!2;UBERON:0001987!4.82e-07!4;UBERON:0004340!4.82e-07!4;UBERON:0003124!5.96e-07!7;UBERON:0000478!6.47e-07!24 | ||
|ontology_enrichment_uberon_v019=UBERON:0001003;7.57e-11;15!UBERON:0007376;7.57e-11;15!UBERON:0002419;2.23e-10;2!UBERON:0007771;2.23e-10;2!UBERON:0003297;2.23e-10;2!UBERON:0001821;2.23e-10;2!UBERON:0003487;2.23e-10;2!UBERON:0001820;2.23e-10;2!UBERON:0000165;1.06e-09;28!UBERON:0000478;5.07e-09;24!UBERON:0001041;2.09e-08;14!UBERON:0010371;2.11e-08;31!UBERON:0000161;2.27e-08;19!UBERON:0000166;2.27e-08;19!UBERON:0005631;3.39e-08;10!UBERON:0000158;3.39e-08;10!UBERON:0001044;7.68e-08;6!UBERON:0003293;7.68e-08;6!UBERON:0003294;7.68e-08;6!UBERON:0010047;7.68e-08;6!UBERON:0003408;7.68e-08;6!UBERON:0000167;7.68e-08;6!UBERON:0001723;1.15e-07;3!UBERON:0001033;1.15e-07;3!UBERON:0001949;4.62e-07;3!UBERON:0000305;5.37e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000166,1.05e-12,22;UBERON:0005631,5.24e-12,14;UBERON:0000158,5.24e-12,14;UBERON:0001003,7.51e-11,15;UBERON:0007376,7.51e-11,15;UBERON:0007383,7.51e-11,15;UBERON:0002419,2.18e-10,2;UBERON:0007771,2.18e-10,2;UBERON:0003297,2.18e-10,2;UBERON:0001821,2.18e-10,2;UBERON:0003487,2.18e-10,2;UBERON:0001820,2.18e-10,2;UBERON:0005089,2.18e-10,2;UBERON:0005088,2.18e-10,2;UBERON:0003102,5.98e-10,99;UBERON:0000165,2.48e-09,29;UBERON:0000930,2.48e-09,29;UBERON:0000478,5.10e-09,24;UBERON:0000153,2.03e-08,62;UBERON:0007811,2.03e-08,62;UBERON:0001044,7.68e-08,6;UBERON:0003293,7.68e-08,6;UBERON:0003294,7.68e-08,6;UBERON:0010047,7.68e-08,6;UBERON:0000167,7.68e-08,6;UBERON:0001444,8.48e-08,49;UBERON:0003408,9.50e-08,10;UBERON:0001042,9.50e-08,10;UBERON:0009145,9.50e-08,10;UBERON:0001723,1.15e-07,3;UBERON:0001033,1.15e-07,3;UBERON:0010056,1.15e-07,3;UBERON:0000161,2.83e-07,36;UBERON:0005795,2.88e-07,22;UBERON:0001949,4.48e-07,3;UBERON:0006562,4.77e-07,11;UBERON:0000305,5.32e-07,7 | |||
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| ||
|short_description=p1@DSG1 | |short_description=p1@DSG1 | ||
}} | }} |
Latest revision as of 04:51, 19 September 2015
Short description: | p1@DSG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DSG1_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | 55bp_to_ENST00000257192, NM_001942, uc002kwp.2_5end |
EntrezGene: | DSG1 |
HGNC: | 3048 |
UniProt: | Q02413 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell | 7.26e-24 | 5 |
protein secreting cell | 7.42e-20 | 6 |
general ecto-epithelial cell | 2.26e-15 | 14 |
acinar cell of salivary gland | 3.09e-15 | 3 |
glandular epithelial cell | 3.69e-13 | 9 |
epidermal cell | 7.53e-13 | 9 |
CD1a-positive Langerhans cell | 7.23e-11 | 2 |
immature CD1a-positive Langerhans cell | 7.23e-11 | 2 |
sebum secreting cell | 2.18e-10 | 2 |
epithelial cell of sweat gland | 2.18e-10 | 2 |
epithelial cell of skin gland | 2.18e-10 | 2 |
acinar cell of sebaceous gland | 2.18e-10 | 2 |
corneal epithelial cell | 4.42e-10 | 2 |
amnion mesenchymal stem cell | 1.19e-09 | 5 |
ecto-epithelial cell | 1.81e-09 | 34 |
keratinocyte | 5.48e-09 | 5 |
stratified squamous epithelial cell | 1.46e-07 | 6 |
keratin accumulating cell | 1.46e-07 | 6 |
stratified epithelial cell | 1.46e-07 | 6 |
keratinizing barrier epithelial cell | 1.46e-07 | 6 |
epithelial fate stem cell | 1.46e-07 | 6 |
stratified epithelial stem cell | 1.46e-07 | 6 |
surface ectodermal cell | 1.46e-07 | 6 |
gingival epithelial cell | 4.48e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
oral opening | 1.05e-12 | 22 |
extraembryonic membrane | 5.24e-12 | 14 |
membranous layer | 5.24e-12 | 14 |
skin epidermis | 7.51e-11 | 15 |
outer epithelium | 7.51e-11 | 15 |
enveloping layer of ectoderm | 7.51e-11 | 15 |
skin gland | 2.18e-10 | 2 |
epidermis gland | 2.18e-10 | 2 |
gland of integumental system | 2.18e-10 | 2 |
sebaceous gland | 2.18e-10 | 2 |
skin sebaceous gland | 2.18e-10 | 2 |
sweat gland | 2.18e-10 | 2 |
sweat gland placode | 2.18e-10 | 2 |
sebaceous gland placode | 2.18e-10 | 2 |
surface structure | 5.98e-10 | 99 |
mouth | 2.48e-09 | 29 |
stomodeum | 2.48e-09 | 29 |
extraembryonic structure | 5.10e-09 | 24 |
anterior region of body | 2.03e-08 | 62 |
craniocervical region | 2.03e-08 | 62 |
saliva-secreting gland | 7.68e-08 | 6 |
gland of oral region | 7.68e-08 | 6 |
gland of foregut | 7.68e-08 | 6 |
oral gland | 7.68e-08 | 6 |
oral cavity | 7.68e-08 | 6 |
subdivision of head | 8.48e-08 | 49 |
gland of gut | 9.50e-08 | 10 |
chordate pharynx | 9.50e-08 | 10 |
pharyngeal region of foregut | 9.50e-08 | 10 |
tongue | 1.15e-07 | 3 |
gustatory system | 1.15e-07 | 3 |
future tongue | 1.15e-07 | 3 |
orifice | 2.83e-07 | 36 |
embryonic uterus | 2.88e-07 | 22 |
gingival epithelium | 4.48e-07 | 3 |
pharynx | 4.77e-07 | 11 |
amnion | 5.32e-07 | 7 |