FFCP PHASE1:Hg19::chr17:76165247..76165265,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:76165247..76165265,+
|short_description=p2@SYNGR2
|description=CAGE_peak_2_at_SYNGR2_5end
|association_with_transcript=-499bp_to_AL833010_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9144 | |EntrezGene=9144 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11499 | |HGNC=11499 | ||
|TSSclassifier=strong | |||
|UniProt=O43760 | |UniProt=O43760 | ||
|association_with_transcript=-499bp_to_AL833010_5end | |||
|cluster_id=chr17:76165247..76165265,+ | |||
|description=CAGE_peak_2_at_SYNGR2_5end | |||
|id=chr17:76165247..76165265,+ | |||
|ontology_enrichment_celltype=CL:0000945!4.25e-14!24;CL:0000826!4.25e-14!24;CL:0000990!4.88e-13!8;CL:0000453!5.62e-13!5;CL:0000451!2.06e-10!10;CL:0000738!3.10e-10!140;CL:0000988!4.82e-09!182;CL:0000542!2.79e-08!53;CL:0000051!2.79e-08!53;CL:0002031!3.23e-08!124;CL:0000163!3.43e-08!9;CL:0000838!1.79e-07!52;CL:0002032!2.36e-07!165;CL:0000837!2.36e-07!165;CL:0000037!2.54e-07!172;CL:0000566!2.54e-07!172;CL:0002274!3.73e-07!5;CL:0000457!3.73e-07!5;CL:0002191!3.73e-07!5;CL:0000097!3.73e-07!5;CL:0000831!3.73e-07!5;CL:0002028!3.73e-07!5;CL:0000840!7.99e-07!5;CL:0001029!7.99e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000453;1.69e-53;5!CL:0000945;4.97e-33;24!CL:0000990;5.67e-30;8!CL:0000451;1.30e-24;10!CL:0001014;1.27e-09;2!CL:0001016;1.27e-09;2!CL:0000542;3.18e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,1.58e-53,5;CL:0000945,5.09e-33,24;CL:0000826,5.09e-33,24;CL:0000990,5.47e-30,8;CL:0000451,1.26e-24,10;CL:0000838,4.27e-15,52;CL:0000542,8.34e-15,53;CL:0000051,8.34e-15,53;CL:0000738,9.44e-14,136;CL:0002032,1.72e-11,161;CL:0000837,1.72e-11,161;CL:0000037,5.62e-11,168;CL:0000988,2.25e-10,177;CL:0001014,1.22e-09,2;CL:0001016,1.22e-09,2;CL:0002031,3.95e-08,120 | |||
|ontology_enrichment_development_v019=CL:0000051;3.18e-08;53 | |||
|ontology_enrichment_disease=DOID:0060058!1.04e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:630;3.44e-18;1!DOID:0050177;3.44e-18;1!DOID:0050427;3.44e-18;1!DOID:0060058;1.54e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:630,3.75e-18,1;DOID:0050177,3.75e-18,1;DOID:0050427,3.75e-18,1;DOID:0060058,1.52e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0002106!8.19e-08!3;UBERON:0004854!8.19e-08!3;UBERON:0009034!8.19e-08!3;UBERON:0002095!8.19e-08!3;UBERON:0004782!8.19e-08!3;UBERON:0003281!8.19e-08!3;UBERON:0009664!8.19e-08!3;UBERON:0002296!8.19e-08!3;UBERON:0005602!8.19e-08!3;UBERON:0001179!8.19e-08!3;UBERON:0006293!8.19e-08!3;UBERON:0004177!8.88e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;6.88e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,6.88e-07,3;UBERON:0004854,6.88e-07,3;UBERON:0009034,6.88e-07,3;UBERON:0002095,6.88e-07,3;UBERON:0004782,6.88e-07,3;UBERON:0003281,6.88e-07,3;UBERON:0009664,6.88e-07,3;UBERON:0002296,6.88e-07,3;UBERON:0005602,6.88e-07,3;UBERON:0001179,6.88e-07,3;UBERON:0006293,6.88e-07,3 | |||
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| ||
|short_description=p2@SYNGR2 | |||
}} | }} |
Latest revision as of 20:32, 17 September 2015
Short description: | p2@SYNGR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SYNGR2_5end |
Coexpression cluster: | NA |
Association with transcript: | -499bp_to_AL833010_5end |
EntrezGene: | SYNGR2 |
HGNC: | 11499 |
UniProt: | O43760 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 1.58e-53 | 5 |
lymphocyte of B lineage | 5.09e-33 | 24 |
pro-B cell | 5.09e-33 | 24 |
conventional dendritic cell | 5.47e-30 | 8 |
dendritic cell | 1.26e-24 | 10 |
lymphoid lineage restricted progenitor cell | 4.27e-15 | 52 |
lymphocyte | 8.34e-15 | 53 |
common lymphoid progenitor | 8.34e-15 | 53 |
leukocyte | 9.44e-14 | 136 |
hematopoietic oligopotent progenitor cell | 1.72e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.72e-11 | 161 |
hematopoietic stem cell | 5.62e-11 | 168 |
hematopoietic cell | 2.25e-10 | 177 |
CD1a-positive Langerhans cell | 1.22e-09 | 2 |
immature CD1a-positive Langerhans cell | 1.22e-09 | 2 |
hematopoietic lineage restricted progenitor cell | 3.95e-08 | 120 |
Ontology term | p-value | n |
---|---|---|
spleen | 6.88e-07 | 3 |
gastrointestinal system mesentery | 6.88e-07 | 3 |
stomach region | 6.88e-07 | 3 |
mesentery | 6.88e-07 | 3 |
gastrointestinal system serosa | 6.88e-07 | 3 |
mesentery of stomach | 6.88e-07 | 3 |
gut mesentery | 6.88e-07 | 3 |
dorsal mesentery | 6.88e-07 | 3 |
dorsal mesogastrium | 6.88e-07 | 3 |
peritoneal cavity | 6.88e-07 | 3 |
spleen primordium | 6.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 3.75e-18 | 1 |
monogenic disease | 3.75e-18 | 1 |
xeroderma pigmentosum | 3.75e-18 | 1 |
lymphoma | 1.52e-07 | 10 |