FFCP PHASE1:Hg19::chr12:54366894..54366922,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3227 | |EntrezGene=3227 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5123 | |HGNC=5123 | ||
|TSSclassifier=strong | |||
|UniProt=O43248 | |UniProt=O43248 | ||
|association_with_transcript=0bp_to_ENST00000243082,ENST00000546378,NM_014212,uc001sem.2_5end | |association_with_transcript=0bp_to_ENST00000243082,ENST00000546378,NM_014212,uc001sem.2_5end | ||
|cluster_id=chr12:54366894..54366922,+ | |||
|coexpression_cluster_id=C1676 | |coexpression_cluster_id=C1676 | ||
|description=CAGE_peak_2_at_HOXC11_5end | |description=CAGE_peak_2_at_HOXC11_5end | ||
|id=chr12:54366894..54366922,+ | |id=chr12:54366894..54366922,+ | ||
|ontology_enrichment_celltype=CL:0002594!8.07e-08!4;CL:0002150!6.15e-07!3;CL:0000861!6.15e-07!3 | |ontology_enrichment_celltype=CL:0002594!8.07e-08!4;CL:0002150!6.15e-07!3;CL:0000861!6.15e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002594;1.13e-10;4!CL:0002588;6.10e-10;2!CL:0002178;1.80e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002594,8.95e-11,4;CL:0002588,1.06e-09,2;CL:0002178,1.86e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.98e-20!143;DOID:305!1.94e-13!106;DOID:14566!7.14e-10!239;DOID:162!2.23e-09!235;DOID:3119!4.69e-07!14;DOID:171!9.12e-07!10 | |ontology_enrichment_disease=DOID:0050687!1.98e-20!143;DOID:305!1.94e-13!106;DOID:14566!7.14e-10!239;DOID:162!2.23e-09!235;DOID:3119!4.69e-07!14;DOID:171!9.12e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:171;3.30e-17;10!DOID:3493;1.98e-10;2!DOID:3119;1.61e-08;14!DOID:299;2.50e-08;25!DOID:3095;1.81e-07;22!DOID:2994;1.81e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,8.37e-22,143;DOID:171,2.87e-17,10;DOID:162,1.02e-12,235;DOID:14566,2.60e-12,239;DOID:305,9.03e-12,106;DOID:3493,2.51e-10,2;DOID:3119,1.67e-08,14;DOID:299,2.49e-08,25;DOID:3095,1.71e-07,22;DOID:2994,1.71e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.38e-15!9;UBERON:0001310!8.07e-08!4;UBERON:0001557!1.69e-07!19 | |ontology_enrichment_uberon=UBERON:0001737!3.38e-15!9;UBERON:0001310!8.07e-08!4;UBERON:0001557!1.69e-07!19 | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;2.06e-20;4!UBERON:0000923;2.06e-20;4!UBERON:0010316;2.06e-20;4!UBERON:0005291;2.06e-20;4!UBERON:0002050;2.36e-16;5!UBERON:0005423;2.36e-16;5!UBERON:0001737;1.45e-12;9!UBERON:0001557;1.45e-12;9!UBERON:0010260;2.76e-12;9!UBERON:0001310;1.13e-10;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.10e-12,9;UBERON:0010260,3.12e-12,9;UBERON:0001310,8.95e-11,4 | |||
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| ||
|short_description=p2@HOXC11 | |short_description=p2@HOXC11 | ||
}} | }} |
Latest revision as of 04:17, 19 September 2015
Short description: | p2@HOXC11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HOXC11_5end |
Coexpression cluster: | C1676_neuroectodermal_synovial_breast_anaplastic_epitheloid_rhabdomyosarcoma_neuroepithelioma |
Association with transcript: | 0bp_to_ENST00000243082, ENST00000546378, NM_014212, uc001sem.2_5end |
EntrezGene: | HOXC11 |
HGNC: | 5123 |
UniProt: | O43248 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the umbilical artery | 8.95e-11 | 4 |
smooth muscle cell of the umbilical vein | 1.06e-09 | 2 |
epithelial cell of stomach | 1.86e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.10e-12 | 9 |
umbilical blood vessel | 3.12e-12 | 9 |
umbilical artery | 8.95e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 8.37e-22 | 143 |
neuroectodermal tumor | 2.87e-17 | 10 |
cancer | 1.02e-12 | 235 |
disease of cellular proliferation | 2.60e-12 | 239 |
carcinoma | 9.03e-12 | 106 |
signet ring cell adenocarcinoma | 2.51e-10 | 2 |
gastrointestinal system cancer | 1.67e-08 | 14 |
adenocarcinoma | 2.49e-08 | 25 |
germ cell and embryonal cancer | 1.71e-07 | 22 |
germ cell cancer | 1.71e-07 | 22 |