FFCP PHASE1:Hg19::chr18:657637..657729,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7298 | |EntrezGene=7298 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12441 | |HGNC=12441 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WYK3,Q8WYK4 | |UniProt=Q8WYK3,Q8WYK4 | ||
|association_with_transcript=-13bp_to_ENST00000323224,ENST00000323250_5end | |association_with_transcript=-13bp_to_ENST00000323224,ENST00000323250_5end | ||
|cluster_id=chr18:657637..657729,+ | |||
|coexpression_cluster_id=C3737 | |coexpression_cluster_id=C3737 | ||
|description=CAGE_peak_1_at_TYMS_5end | |description=CAGE_peak_1_at_TYMS_5end | ||
|id=chr18:657637..657729,+ | |id=chr18:657637..657729,+ | ||
|ontology_enrichment_celltype=CL:0000012!1.92e-15!682;CL:0000548!4.43e-15!679;CL:0000004!4.43e-15!679;CL:0000255!4.43e-15!679;CL:0000066!4.56e-14!254;CL:0002321!1.68e-10!248;CL:0000220!1.88e-10!246;CL:0000003!3.16e-09!722;CL:0000055!8.83e-09!180;CL:0000333!1.66e-07!41;CL:0000144!2.94e-07!625;CL:0002078!5.96e-07!44;CL:0000133!6.24e-07!59 | |ontology_enrichment_celltype=CL:0000012!1.92e-15!682;CL:0000548!4.43e-15!679;CL:0000004!4.43e-15!679;CL:0000255!4.43e-15!679;CL:0000066!4.56e-14!254;CL:0002321!1.68e-10!248;CL:0000220!1.88e-10!246;CL:0000003!3.16e-09!722;CL:0000055!8.83e-09!180;CL:0000333!1.66e-07!41;CL:0000144!2.94e-07!625;CL:0002078!5.96e-07!44;CL:0000133!6.24e-07!59 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.50e-14,253;CL:0002321,1.45e-10,250;CL:0000333,1.59e-07,41;CL:0002078,3.10e-07,45;CL:0000213,6.28e-07,58;CL:0000215,6.28e-07,58;CL:0000133,6.77e-07,59;CL:0000222,9.75e-07,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!6.80e-30!235;DOID:14566!3.92e-29!239;DOID:2531!1.20e-21!51;DOID:0060083!1.20e-21!51;DOID:1240!1.24e-18!39;DOID:0050686!1.16e-17!137;DOID:8692!1.97e-14!31;DOID:0050687!3.04e-11!143;DOID:305!2.64e-09!106 | |ontology_enrichment_disease=DOID:162!6.80e-30!235;DOID:14566!3.92e-29!239;DOID:2531!1.20e-21!51;DOID:0060083!1.20e-21!51;DOID:1240!1.24e-18!39;DOID:0050686!1.16e-17!137;DOID:8692!1.97e-14!31;DOID:0050687!3.04e-11!143;DOID:305!2.64e-09!106 | ||
|ontology_enrichment_disease_v019=DOID:1240;6.30e-15;39!DOID:8692;5.23e-14;31!DOID:2531;1.86e-13;51!DOID:0060083;1.86e-13;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,6.06e-30,235;DOID:14566,3.51e-29,239;DOID:2531,1.03e-21,51;DOID:0060083,1.03e-21,51;DOID:1240,1.09e-18,39;DOID:0050686,1.03e-17,137;DOID:8692,1.79e-14,31;DOID:0050687,3.02e-11,143;DOID:305,2.50e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0001737!4.99e-07!9 | |ontology_enrichment_uberon=UBERON:0001737!4.99e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.78e-07;9!UBERON:0001557;4.78e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.79e-07,9 | |||
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| ||
|short_description=p1@TYMS | |short_description=p1@TYMS | ||
}} | }} |
Latest revision as of 05:55, 20 September 2015
Short description: | p1@TYMS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TYMS_5end |
Coexpression cluster: | C3737_chronic_Hodgkin_acute_merkel_Hep2_hereditary_cord |
Association with transcript: | -13bp_to_ENST00000323224, ENST00000323250_5end |
EntrezGene: | TYMS |
HGNC: | 12441 |
UniProt: | Q8WYK3Q8WYK4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.50e-14 | 253 |
embryonic cell | 1.45e-10 | 250 |
migratory neural crest cell | 1.59e-07 | 41 |
meso-epithelial cell | 3.10e-07 | 45 |
lining cell | 6.28e-07 | 58 |
barrier cell | 6.28e-07 | 58 |
neurectodermal cell | 6.77e-07 | 59 |
mesodermal cell | 9.75e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.79e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
cancer | 6.06e-30 | 235 |
disease of cellular proliferation | 3.51e-29 | 239 |
hematologic cancer | 1.03e-21 | 51 |
immune system cancer | 1.03e-21 | 51 |
leukemia | 1.09e-18 | 39 |
organ system cancer | 1.03e-17 | 137 |
myeloid leukemia | 1.79e-14 | 31 |
cell type cancer | 3.02e-11 | 143 |
carcinoma | 2.50e-09 | 106 |