FFCP PHASE1:Hg19::chr1:24790417..24790440,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:24790417..24790440,+ | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_at_chr1:24790417..24790440,+ | |description=CAGE_peak_at_chr1:24790417..24790440,+ | ||
|id=chr1:24790417..24790440,+ | |id=chr1:24790417..24790440,+ | ||
|ontology_enrichment_celltype=CL:0002322!2.31e-22!5;CL:0000242!1.66e-09!2;CL:0000540!2.35e-07!6;CL:0000031!2.35e-07!6;CL:0000404!2.35e-07!6 | |ontology_enrichment_celltype=CL:0002322!2.31e-22!5;CL:0000242!1.66e-09!2;CL:0000540!2.35e-07!6;CL:0000031!2.35e-07!6;CL:0000404!2.35e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002322;9.58e-76;5!CL:0002321;1.99e-25;15!CL:0000540;7.53e-24;6!CL:0000404;7.53e-24;6!CL:0000148;2.38e-14;10!CL:0000147;2.00e-10;14!CL:0000710;1.83e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.21e-75,5;CL:0000540,7.83e-24,6;CL:0000031,7.83e-24,6;CL:0000404,7.83e-24,6;CL:0000047,4.69e-18,8;CL:0000148,2.55e-14,10;CL:0000541,2.55e-14,10;CL:0000147,2.10e-10,14;CL:0000133,7.87e-09,59;CL:0000710,1.90e-07,20;CL:0000221,3.16e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000031;7.53e-24;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!5.20e-23!86;UBERON:0001049!5.58e-23!57;UBERON:0005068!5.58e-23!57;UBERON:0006241!5.58e-23!57;UBERON:0007135!5.58e-23!57;UBERON:0001017!3.24e-22!82;UBERON:0002616!4.70e-22!59;UBERON:0000073!2.56e-20!94;UBERON:0001016!2.56e-20!94;UBERON:0003075!5.75e-19!86;UBERON:0007284!5.75e-19!86;UBERON:0000955!6.69e-18!69;UBERON:0006238!6.69e-18!69;UBERON:0002346!6.82e-18!90;UBERON:0007023!4.96e-16!115;UBERON:0002308!6.03e-16!9;UBERON:0000125!6.03e-16!9;UBERON:0002780!8.38e-16!41;UBERON:0001890!8.38e-16!41;UBERON:0006240!8.38e-16!41;UBERON:0003080!2.31e-15!42;UBERON:0001894!5.41e-15!7;UBERON:0006222!5.41e-15!7;UBERON:0000988!5.56e-13!3;UBERON:0002298!1.98e-12!8;UBERON:0004121!4.84e-12!169;UBERON:0000924!1.27e-11!173;UBERON:0006601!1.27e-11!173;UBERON:0004733!1.89e-11!12;UBERON:0002028!1.89e-11!12;UBERON:0007277!1.89e-11!12;UBERON:0003056!2.43e-11!61;UBERON:0004732!1.59e-10!13;UBERON:0003296!3.45e-10!4;UBERON:0010133!3.45e-10!4;UBERON:0000153!9.67e-10!129;UBERON:0007811!9.67e-10!129;UBERON:0002020!1.25e-09!34;UBERON:0003528!1.25e-09!34;UBERON:0009663!1.62e-09!7;UBERON:0000369!1.64e-09!4;UBERON:0002435!1.64e-09!4;UBERON:0000204!1.64e-09!4;UBERON:0010082!1.64e-09!4;UBERON:0002148!2.23e-09!2;UBERON:0009662!2.23e-09!2;UBERON:0001905!2.43e-09!2;UBERON:0002757!2.43e-09!2;UBERON:0010134!2.43e-09!2;UBERON:0002784!2.43e-09!2;UBERON:0005408!2.43e-09!2;UBERON:0001899!2.43e-09!2;UBERON:0000033!2.83e-09!123;UBERON:0003076!4.84e-09!15;UBERON:0003057!4.84e-09!15;UBERON:0001869!3.19e-08!32;UBERON:0001893!1.15e-07!34;UBERON:0002420!2.05e-07!9;UBERON:0007245!2.05e-07!9;UBERON:0010009!2.05e-07!9;UBERON:0010011!2.05e-07!9;UBERON:0000454!2.05e-07!9;UBERON:0002680!2.35e-07!9;UBERON:0001895!2.35e-07!9;UBERON:0010092!2.35e-07!9 | |ontology_enrichment_uberon=UBERON:0005743!5.20e-23!86;UBERON:0001049!5.58e-23!57;UBERON:0005068!5.58e-23!57;UBERON:0006241!5.58e-23!57;UBERON:0007135!5.58e-23!57;UBERON:0001017!3.24e-22!82;UBERON:0002616!4.70e-22!59;UBERON:0000073!2.56e-20!94;UBERON:0001016!2.56e-20!94;UBERON:0003075!5.75e-19!86;UBERON:0007284!5.75e-19!86;UBERON:0000955!6.69e-18!69;UBERON:0006238!6.69e-18!69;UBERON:0002346!6.82e-18!90;UBERON:0007023!4.96e-16!115;UBERON:0002308!6.03e-16!9;UBERON:0000125!6.03e-16!9;UBERON:0002780!8.38e-16!41;UBERON:0001890!8.38e-16!41;UBERON:0006240!8.38e-16!41;UBERON:0003080!2.31e-15!42;UBERON:0001894!5.41e-15!7;UBERON:0006222!5.41e-15!7;UBERON:0000988!5.56e-13!3;UBERON:0002298!1.98e-12!8;UBERON:0004121!4.84e-12!169;UBERON:0000924!1.27e-11!173;UBERON:0006601!1.27e-11!173;UBERON:0004733!1.89e-11!12;UBERON:0002028!1.89e-11!12;UBERON:0007277!1.89e-11!12;UBERON:0003056!2.43e-11!61;UBERON:0004732!1.59e-10!13;UBERON:0003296!3.45e-10!4;UBERON:0010133!3.45e-10!4;UBERON:0000153!9.67e-10!129;UBERON:0007811!9.67e-10!129;UBERON:0002020!1.25e-09!34;UBERON:0003528!1.25e-09!34;UBERON:0009663!1.62e-09!7;UBERON:0000369!1.64e-09!4;UBERON:0002435!1.64e-09!4;UBERON:0000204!1.64e-09!4;UBERON:0010082!1.64e-09!4;UBERON:0002148!2.23e-09!2;UBERON:0009662!2.23e-09!2;UBERON:0001905!2.43e-09!2;UBERON:0002757!2.43e-09!2;UBERON:0010134!2.43e-09!2;UBERON:0002784!2.43e-09!2;UBERON:0005408!2.43e-09!2;UBERON:0001899!2.43e-09!2;UBERON:0000033!2.83e-09!123;UBERON:0003076!4.84e-09!15;UBERON:0003057!4.84e-09!15;UBERON:0001869!3.19e-08!32;UBERON:0001893!1.15e-07!34;UBERON:0002420!2.05e-07!9;UBERON:0007245!2.05e-07!9;UBERON:0010009!2.05e-07!9;UBERON:0010011!2.05e-07!9;UBERON:0000454!2.05e-07!9;UBERON:0002680!2.35e-07!9;UBERON:0001895!2.35e-07!9;UBERON:0010092!2.35e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0000341;7.79e-09;2!UBERON:0000007;7.79e-09;2!UBERON:0001875;7.79e-09;2!UBERON:0006514;7.79e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,6.94e-09,2;UBERON:0001875,7.49e-09,2;UBERON:0006514,7.49e-09,2;UBERON:0000341,8.09e-09,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29329006549908,3.71083351300159,2.78865462886844,1.0366105501537,5.2987378683882,7.66452454059243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.50108815702054,3.57602535152808,9.13968743664207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0.110929051536852,0.18628920882415,0,0,0,0,0,0.468334905806882,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385375350578757,0,0,0.41023272848151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0.0634158101939068,0,0,0,0,0,0.535701835878287,0.336283722218824,1.21393120847326,0,0,0,0,0.203909198930495,0,0,0,0,0.157115589916002,0,0,0,0,0.428859265059938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,3.65882632021729,0.546327859818478,0,0.407955318967927,0,0.0918948995348449,0,0,0,0,0.413731983447581,0,1.1903221573187,0,0,0,0.891060215894309,0.606351566874658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29329006549908,3.71083351300159,2.78865462886844,1.0366105501537,5.2987378683882,7.66452454059243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.50108815702054,3.57602535152808,9.13968743664207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0.110929051536852,0.18628920882415,0,0,0,0,0,0.468334905806882,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385375350578757,0,0,0.41023272848151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0.0634158101939068,0,0,0,0,0,0.535701835878287,0.336283722218824,1.21393120847326,0,0,0,0,0.203909198930495,0,0,0,0,0.157115589916002,0,0,0,0,0.428859265059938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,3.65882632021729,0.546327859818478,0,0.407955318967927,0,0.0918948995348449,0,0,0,0,0.413731983447581,0,1.1903221573187,0,0,0,0.891060215894309,0.606351566874658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:24790417..24790440,+ | |short_description=p@chr1:24790417..24790440,+ | ||
}} | }} |
Latest revision as of 06:13, 28 July 2015
Short description: | p@chr1:24790417..24790440, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:24790417..24790440, + |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.21e-75 | 5 |
neuron | 7.83e-24 | 6 |
neuroblast | 7.83e-24 | 6 |
electrically signaling cell | 7.83e-24 | 6 |
neuronal stem cell | 4.69e-18 | 8 |
melanocyte | 2.55e-14 | 10 |
melanoblast | 2.55e-14 | 10 |
pigment cell | 2.10e-10 | 14 |
neurectodermal cell | 7.87e-09 | 59 |
neurecto-epithelial cell | 1.90e-07 | 20 |
ectodermal cell | 3.16e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
pituitary gland | 6.94e-09 | 2 |
globus pallidus | 7.49e-09 | 2 |
pallidum | 7.49e-09 | 2 |
throat | 8.09e-09 | 2 |