FFCP PHASE1:Hg19::chr3:55384353..55384357,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:55384353..55384357,+ | |||
|coexpression_cluster_id=C1264 | |coexpression_cluster_id=C1264 | ||
|description=CAGE_peak_at_chr3:55384353..55384357,+ | |description=CAGE_peak_at_chr3:55384353..55384357,+ | ||
|id=chr3:55384353..55384357,+ | |id=chr3:55384353..55384357,+ | ||
|ontology_enrichment_celltype=CL:0000349!1.35e-50!3;CL:0002577!1.35e-50!3;CL:0002541!1.67e-49!3;CL:0002536!1.31e-34!2;CL:0002537!5.20e-30!5;CL:0002097!1.71e-09!2;CL:0000174!9.64e-07!3 | |ontology_enrichment_celltype=CL:0000349!1.35e-50!3;CL:0002577!1.35e-50!3;CL:0002541!1.67e-49!3;CL:0002536!1.31e-34!2;CL:0002537!5.20e-30!5;CL:0002097!1.71e-09!2;CL:0000174!9.64e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002577;2.17e-98;3!CL:0002536;1.71e-66;2!CL:0000349;2.55e-62;19!CL:0002541;2.74e-12;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,2.17e-98,3;CL:0002536,1.04e-66,2;CL:0000349,2.55e-62,19;CL:0002541,3.24e-12,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!7.45e-141!14;UBERON:0000158!7.45e-141!14;UBERON:0003124!2.67e-84!7;UBERON:0000478!5.24e-82!24;UBERON:0000305!7.99e-59!7;UBERON:0004871!1.62e-51!8;UBERON:0000476!1.67e-49!3;UBERON:0000920!1.67e-49!3;UBERON:0001987!3.58e-38!4;UBERON:0004340!3.58e-38!4;UBERON:0004923!3.27e-34!57;UBERON:0000064!6.10e-10!219;UBERON:0000995!8.47e-08!21;UBERON:0005795!1.81e-07!22;UBERON:0003975!1.81e-07!22;UBERON:0002369!9.64e-07!3;UBERON:0001235!9.64e-07!3;UBERON:0006858!9.64e-07!3 | |ontology_enrichment_uberon=UBERON:0005631!7.45e-141!14;UBERON:0000158!7.45e-141!14;UBERON:0003124!2.67e-84!7;UBERON:0000478!5.24e-82!24;UBERON:0000305!7.99e-59!7;UBERON:0004871!1.62e-51!8;UBERON:0000476!1.67e-49!3;UBERON:0000920!1.67e-49!3;UBERON:0001987!3.58e-38!4;UBERON:0004340!3.58e-38!4;UBERON:0004923!3.27e-34!57;UBERON:0000064!6.10e-10!219;UBERON:0000995!8.47e-08!21;UBERON:0005795!1.81e-07!22;UBERON:0003975!1.81e-07!22;UBERON:0002369!9.64e-07!3;UBERON:0001235!9.64e-07!3;UBERON:0006858!9.64e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0001987;4.26e-74;4!UBERON:0000478;1.68e-49;24!UBERON:0005631;2.51e-30;10!UBERON:0000158;2.51e-30;10!UBERON:0000305;6.79e-20;7!UBERON:0003124;2.74e-12;3!UBERON:0000920;2.74e-12;3!UBERON:0000077;9.28e-12;27!UBERON:0000474;3.72e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.84e-84,14;UBERON:0000158,2.84e-84,14;UBERON:0003124,6.84e-75,7;UBERON:0001987,4.26e-74,4;UBERON:0004340,4.26e-74,4;UBERON:0000478,1.68e-49,24;UBERON:0000305,5.89e-20,7;UBERON:0004923,2.12e-18,66;UBERON:0004871,1.33e-17,8;UBERON:0000995,6.85e-15,21;UBERON:0005795,2.99e-14,22;UBERON:0003975,2.99e-14,22;UBERON:0004175,1.23e-12,25;UBERON:0000920,3.24e-12,3;UBERON:0000077,5.32e-11,29;UBERON:0003134,8.85e-09,37;UBERON:0000474,8.85e-09,37;UBERON:0003100,5.45e-08,41;UBERON:0006554,4.69e-07,47;UBERON:0003133,6.38e-07,48;UBERON:0001008,6.38e-07,48 | |||
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|short_description=p@chr3:55384353..55384357,+ | |short_description=p@chr3:55384353..55384357,+ | ||
}} | }} |
Latest revision as of 22:42, 29 July 2015
Short description: | p@chr3:55384353..55384357, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:55384353..55384357, + |
Coexpression cluster: | C1264_Amniotic_Placental_chorionic_amniotic_Mesenchymal_lung_MCF7 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 2.17e-98 | 3 |
amniotic epithelial cell | 1.04e-66 | 2 |
extraembryonic cell | 2.55e-62 | 19 |
chorionic membrane mesenchymal stem cell | 3.24e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.84e-84 | 14 |
membranous layer | 2.84e-84 | 14 |
chorion | 6.84e-75 | 7 |
placenta | 4.26e-74 | 4 |
allantois | 4.26e-74 | 4 |
extraembryonic structure | 1.68e-49 | 24 |
amnion | 5.89e-20 | 7 |
organ component layer | 2.12e-18 | 66 |
somatic layer of lateral plate mesoderm | 1.33e-17 | 8 |
uterus | 6.85e-15 | 21 |
embryonic uterus | 2.99e-14 | 22 |
internal female genitalia | 2.99e-14 | 22 |
internal genitalia | 1.23e-12 | 25 |
egg chorion | 3.24e-12 | 3 |
mixed endoderm/mesoderm-derived structure | 5.32e-11 | 29 |
female reproductive organ | 8.85e-09 | 37 |
female reproductive system | 8.85e-09 | 37 |
female organism | 5.45e-08 | 41 |
urinary system structure | 4.69e-07 | 47 |
reproductive organ | 6.38e-07 | 48 |
renal system | 6.38e-07 | 48 |