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{{UBERON
{{UBERON
|id=UBERON:0002101
|alt_id=
|name=limb
|anatomical_img_id=FMA:7182
|namespace=
|def=
|xref=AAO:0010336;;EFO:0000876;;EHDAA:1697;;EHDAA:8273;;EHDAA2:0003172;;EMAPA:16405;;FMA:7182;;GAID:36;;galen:Extremity;;MA:0000007;;MAT:0000090;;MIAA:0000090;;ncithesaurus:Limb;;OpenCyc:Mx4rvn1uSZwpEbGdrcN5Y29ycA;;SCTID:243996003;;VHOG:0000336;;XAO:0003027
|is_a=UBERON:0004708
|synonym="limb sensu vertebrata" EXACT [MAT:0000090];;"tetrapod limb" EXACT []
|comment=
|comment=
|alt_id=UBERON:FMA_7182-MA_0000007-MIAA_0000090-XAO_0003027
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A paired appendage that is evolved from a paired fin. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the girdle and its parts." [UBERONREF:0000003, Wikipedia:Limb]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0004347
|develops_from=UBERON:0004347
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002101
|is_a=UBERON:0004708
|is_obsolete=
|located_in=
|located_in=
|name=limb
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Organism subdivision that has as its parts the jointed appendages used for locomotion and manipulation.[AAO]" xsd:string
|subset=uberon_slim
|synonym="flipper" NARROW SENSU [];;"free limb" EXACT [FMA:24875];;"limb sensu vertebrata" EXACT [MAT:0000090];;"tetrapod limb" EXACT []
|union_of=
|xref=AAO:0010336;;EFO:0000876;;EHDAA2:0003172;;EHDAA:1697;;EHDAA:8273;;EMAPA:16405;;FMA:24875;;GAID:36;;galen:Extremity;;MA:0000007;;MAT:0000090;;MIAA:0000090;;ncithesaurus:Limb;;OpenCyc:Mx4rvn1uSZwpEbGdrcN5Y29ycA;;SCTID:243996003;;VHOG:0000336;;VSAO:0000121;;XAO:0003027
}}
}}

Latest revision as of 17:26, 12 September 2014

Name:limb
Namespace:FANTOM
Definition:"A paired appendage that is evolved from a paired fin. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the girdle and its parts." [UBERONREF:0000003, Wikipedia:Limb]
Xrefs:
links:

AAO:0010336
EFO:0000876
EHDAA2:0003172
EHDAA:1697
EHDAA:8273
EMAPA:16405
FMA:24875
GAID:36
galen:Extremity
MA:0000007
MAT:0000090
MIAA:0000090
ncithesaurus:Limb
OpenCyc:Mx4rvn1uSZwpEbGdrcN5Y29ycA
SCTID:243996003
VHOG:0000336
VSAO:0000121

XAO:0003027
Synonyms: "flipper" NARROW SENSU []
"free limb" EXACT [FMA:24875]
"limb sensu vertebrata" EXACT [MAT:0000090]
"tetrapod limb" EXACT []
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004708(paired limb/fin)
develops_from:UBERON:0004347(limb bud)



Children

is a:UBERON:0002102 (forelimb),UBERON:0002103 (hindlimb),UBERON:0003285 (limb of embryo)
part of:UBERON:0001419 (skin of limb),UBERON:0002428 (limb bone),UBERON:0002472 (stylopod),UBERON:0002529 (limb segment),UBERON:0003587 (limb connective tissue),UBERON:0003606 (limb long bone),UBERON:0003657 (limb joint),UBERON:0003661 (limb muscle),UBERON:0004381 (skeleton of limb),UBERON:0004480 (musculature of limb),UBERON:0009749 (limb mesenchyme),UBERON:0010712 (limb skeleton subdivision),UBERON:0011139 (synovial limb joint),UBERON:0015061 (limb endochondral element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002101 (limb), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_19a8961967130a69efa8c10dacd7121cp@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_19a8961967130a69efa8c10dacd7121cp@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_19a8961967130a69efa8c10dacd7121cp@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_19a8961967130a69efa8c10dacd7121cp@chr11:3691037..3691040, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_19a8961967130a69efa8c10dacd7121cp@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_19a8961967130a69efa8c10dacd7121cp@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_19a8961967130a69efa8c10dacd7121cp@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_19a8961967130a69efa8c10dacd7121cp@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_19a8961967130a69efa8c10dacd7121cp@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_19a8961967130a69efa8c10dacd7121cp@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_19a8961967130a69efa8c10dacd7121cp@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_19a8961967130a69efa8c10dacd7121cp@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_19a8961967130a69efa8c10dacd7121cp@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_19a8961967130a69efa8c10dacd7121cp@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_19a8961967130a69efa8c10dacd7121cp@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_19a8961967130a69efa8c10dacd7121cp@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_19a8961967130a69efa8c10dacd7121cp@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_19a8961967130a69efa8c10dacd7121cp@chr2:179396370..179396375, -
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_57df4c38a66d67975f18f3baa77006eep@chr22:36000901..36000903, -
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_57df4c38a66d67975f18f3baa77006eep@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_57df4c38a66d67975f18f3baa77006eep54@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_57df4c38a66d67975f18f3baa77006eep@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_57df4c38a66d67975f18f3baa77006eep@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_57df4c38a66d67975f18f3baa77006eep@chr2:179514306..179514308, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_57df4c38a66d67975f18f3baa77006eep104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_57df4c38a66d67975f18f3baa77006eep@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_57df4c38a66d67975f18f3baa77006eep@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_57df4c38a66d67975f18f3baa77006eep7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_57df4c38a66d67975f18f3baa77006eep104@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_57df4c38a66d67975f18f3baa77006eep@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_57df4c38a66d67975f18f3baa77006eep1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_57df4c38a66d67975f18f3baa77006eep108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_57df4c38a66d67975f18f3baa77006eep7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_57df4c38a66d67975f18f3baa77006eep@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_57df4c38a66d67975f18f3baa77006eep54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_57df4c38a66d67975f18f3baa77006eep108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_57df4c38a66d67975f18f3baa77006eep@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_57df4c38a66d67975f18f3baa77006eep@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152553958..152553964, -
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_57df4c38a66d67975f18f3baa77006eep1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_57df4c38a66d67975f18f3baa77006eep@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_57df4c38a66d67975f18f3baa77006eep@chr5:137206180..137206187, +
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_57df4c38a66d67975f18f3baa77006eep@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_57df4c38a66d67975f18f3baa77006eep@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_57df4c38a66d67975f18f3baa77006eep@chr1:119487319..119487331, -
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_57df4c38a66d67975f18f3baa77006eep@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_57df4c38a66d67975f18f3baa77006eep@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_57df4c38a66d67975f18f3baa77006eep93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_57df4c38a66d67975f18f3baa77006eep@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_57df4c38a66d67975f18f3baa77006eep@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_57df4c38a66d67975f18f3baa77006eep@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_57df4c38a66d67975f18f3baa77006eep77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_57df4c38a66d67975f18f3baa77006eep@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_57df4c38a66d67975f18f3baa77006eep@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_57df4c38a66d67975f18f3baa77006eep77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_57df4c38a66d67975f18f3baa77006eep46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_57df4c38a66d67975f18f3baa77006eep@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_57df4c38a66d67975f18f3baa77006eep@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_57df4c38a66d67975f18f3baa77006eep93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_57df4c38a66d67975f18f3baa77006eep@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_57df4c38a66d67975f18f3baa77006eep@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_57df4c38a66d67975f18f3baa77006eep46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_57df4c38a66d67975f18f3baa77006eep@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_57df4c38a66d67975f18f3baa77006eep@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_57df4c38a66d67975f18f3baa77006eep@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_57df4c38a66d67975f18f3baa77006eep@chr13:51335579..51335582, +
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_f3ff2c558a075dd2b7f1b3a097418780p38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_f3ff2c558a075dd2b7f1b3a097418780p27@CLIP4
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr18:8608021..8608050, +
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_f3ff2c558a075dd2b7f1b3a097418780p27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_f3ff2c558a075dd2b7f1b3a097418780p38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_f3ff2c558a075dd2b7f1b3a097418780p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_f3ff2c558a075dd2b7f1b3a097418780p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_f3ff2c558a075dd2b7f1b3a097418780p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_f3ff2c558a075dd2b7f1b3a097418780p@chr10:97037060..97037066, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Organism subdivision that has as its parts the jointed appendages used for locomotion and manipulation.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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