UBERON:0004765: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=TODO - add more general class for other kinds of mineralized tissue | |comment=TODO - add more general class for other kinds of mineralized tissue | ||
|created_by= | |created_by= | ||
| | |def="Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [UBERON:cjm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004765 | |||
|is_a=UBERON:0000062 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=skeletal element | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001434 | |part_of=UBERON:0001434 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.[VSAO]" xsd:string;;UBPROP:0000001 "Organ entity that may have different tissue compositions at different stages and is typically involved in mechanical support.[TAO]" xsd:string | |||
|subset=organ_slim;;uberon_slim | |||
|synonym= | |||
|union_of= | |||
|xref=AAO:0011129;;galen:SkeletalStructure;;TAO:0001890;;VSAO:0000128;;XAO:0004012;;ZFA:0005494 | |||
}} | }} | ||
Latest revision as of 17:47, 12 September 2014
| Name: | skeletal element | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [UBERON:cjm] | ||
| Xrefs: |
| ||
| Comments: | TODO - add more general class for other kinds of mineralized tissue | ||
| Subset: |
organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000062(organ) |
|---|---|
| part_of: | UBERON:0001434(skeletal system) |
Children
| is a: | UBERON:0001474 (bone element),UBERON:0004339 (calvarium),UBERON:0004637 (otic capsule),UBERON:0004756 (dermal skeletal element),UBERON:0007844 (cartilage element),UBERON:0010363 (endochondral element),UBERON:0010913 (vertebral element) |
|---|---|
| part of: | UBERON:0004755 (skeletal tissue) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10192-103E3 (bone marrow, adult)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10445-106F4
- 10474-106I6 (myeloma cell line:PCM6)
- 10479-107A2
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10551-107I2
- 10558-107I9 (osteosarcoma cell line:HS-Os-1)
- 10574-108B7
- 10586-108D1
... further results Mouse (Mus musculus)
- 10192-103E3 (bone marrow, adult)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10445-106F4
- 10474-106I6 (myeloma cell line:PCM6)
- 10479-107A2
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10551-107I2
- 10558-107I9 (osteosarcoma cell line:HS-Os-1)
- 10574-108B7
- 10586-108D1
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004765 (skeletal element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.04e-99 | FFCP PHASE1:Hg19::chr1:161187824..161187847,+#_beb79e0f1c60038cad5d8195170b1b06 | p@chr1:161187824..161187847, + |
| 5.04e-99 | FFCP PHASE2:Hg19::chr1:161187824..161187847,+#_beb79e0f1c60038cad5d8195170b1b06 | p@chr1:161187824..161187847, + |
| 3.8e-95 | FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_27b63315c2caffa3275fa835b3e1357b | p@chr1:161188661..161188679, + |
| 3.8e-95 | FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_27b63315c2caffa3275fa835b3e1357b | p@chr1:161188661..161188679, + |
| 4.88e-95 | FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_edcd7c9370a22e6e71b6011324b0824a | p@chr16:50313426..50313459, + |
| 4.88e-95 | FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_edcd7c9370a22e6e71b6011324b0824a | p@chr16:50313426..50313459, + |
| 1.03e-93 | FFCP PHASE1:Hg19::chr7:77050554..77050601,+#_fa507844f8793d967e1dd6b31e1e2f63 | p@chr7:77050554..77050601, + |
| 1.03e-93 | FFCP PHASE2:Hg19::chr7:77050554..77050601,+#_fa507844f8793d967e1dd6b31e1e2f63 | p@chr7:77050554..77050601, + |
| 1.6e-93 | FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_e3a65b26dece1de662aca83d8613db76 | p7@EMILIN2 |
| 1.6e-93 | FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_e3a65b26dece1de662aca83d8613db76 | p7@EMILIN2 |
| 1.79e-92 | FFCP PHASE1:Hg19::chr1:161188746..161188758,+#_835cd6b24fe4262373d1aa62eaf68cf1 | p@chr1:161188746..161188758, + |
| 1.79e-92 | FFCP PHASE2:Hg19::chr1:161188746..161188758,+#_835cd6b24fe4262373d1aa62eaf68cf1 | p@chr1:161188746..161188758, + |
| 2.94e-92 | FFCP PHASE2:Hg19::chr17:7482481..7482508,-#_1a21370a7dbaaee1f759c4eda8c7014f | p@chr17:7482481..7482508, - |
| 2.94e-92 | FFCP PHASE1:Hg19::chr17:7482481..7482508,-#_1a21370a7dbaaee1f759c4eda8c7014f | p@chr17:7482481..7482508, - |
| 1.74e-91 | FFCP PHASE1:Hg19::chr19:18288651..18288682,+#_c3a292b04884a3b64dfa3e61352bbf02 | p5@IFI30 |
| 1.74e-91 | FFCP PHASE2:Hg19::chr19:18288651..18288682,+#_c3a292b04884a3b64dfa3e61352bbf02 | p5@IFI30 |
| 6.66e-90 | FFCP PHASE1:Hg19::chr4:3387239..3387324,-#_773609cc7bceb8b59550f9903353bd6b | p@chr4:3387239..3387324, - |
| 6.66e-90 | FFCP PHASE2:Hg19::chr4:3387239..3387324,-#_773609cc7bceb8b59550f9903353bd6b | p@chr4:3387239..3387324, - |
| 2.82e-89 | FFCP PHASE1:Hg19::chr7:2832730..2832791,+#_c59b5041276d8f02266ed1324a9c37c9 | p@chr7:2832730..2832791, + |
| 2.82e-89 | FFCP PHASE2:Hg19::chr7:2832730..2832791,+#_c59b5041276d8f02266ed1324a9c37c9 | p@chr7:2832730..2832791, + |
| 8.14e-89 | FFCP PHASE2:Hg19::chr5:180242646..180242657,-#_c5d383366b31dcfd79f343ae18def0de | p15@MGAT1 |
| 8.14e-89 | FFCP PHASE1:Hg19::chr5:180242646..180242657,-#_c5d383366b31dcfd79f343ae18def0de | p15@MGAT1 |
| 4.13e-88 | FFCP PHASE1:Hg19::chr19:18288828..18288861,+#_8a51e0e9689287054ba2feb7f2a50f00 | p7@IFI30 |
| 4.13e-88 | FFCP PHASE2:Hg19::chr19:18288828..18288861,+#_8a51e0e9689287054ba2feb7f2a50f00 | p7@IFI30 |
| 4.97e-88 | FFCP PHASE2:Hg19::chr1:111743000..111743011,+#_55a590681a9ad23d909f3d221be941d4 | p8@CHI3L2 |
| 4.97e-88 | FFCP PHASE1:Hg19::chr1:111743000..111743011,+#_55a590681a9ad23d909f3d221be941d4 | p8@CHI3L2 |
| 8.34e-88 | FFCP PHASE1:Hg19::chr17:40168698..40168726,-#_070b254ba698d47b52283005755bed52 | p1@AK126179 |
| 8.34e-88 | FFCP PHASE2:Hg19::chr17:40168698..40168726,-#_070b254ba698d47b52283005755bed52 | p1@AK126179 |
| 5.04e-87 | FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_deb81c091feb48c74f85b0346a4feff8 | p@chr2:145429606..145429658, + |
| 5.04e-87 | FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_deb81c091feb48c74f85b0346a4feff8 | p@chr2:145429606..145429658, + |
| 2.42e-86 | FFCP PHASE2:Hg19::chr19:18286116..18286156,+#_ed3e7bf0314e43e365b646ec496cfa6b | p@chr19:18286116..18286156, + |
| 2.42e-86 | FFCP PHASE1:Hg19::chr19:18286116..18286156,+#_ed3e7bf0314e43e365b646ec496cfa6b | p@chr19:18286116..18286156, + |
| 2.54e-86 | FFCP PHASE1:Hg19::chr17:72542163..72542182,-#_c468c61fa80f56d5819cf7bf36424b3c | p2@CD300C |
| 2.54e-86 | FFCP PHASE2:Hg19::chr17:72542163..72542182,-#_c468c61fa80f56d5819cf7bf36424b3c | p2@CD300C |
| 1.19e-85 | FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_7510245aeb0c8a02ead27bc12217e166 | p1@CYP1B1-AS1 |
| 1.19e-85 | FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_7510245aeb0c8a02ead27bc12217e166 | p1@CYP1B1-AS1 |
| 2.28e-85 | FFCP PHASE2:Hg19::chr15:65174546..65174583,-#_b6b0340e3ee112dade2a7bc0c47a0a05 | p@chr15:65174546..65174583, - |
| 2.28e-85 | FFCP PHASE1:Hg19::chr15:65174546..65174583,-#_b6b0340e3ee112dade2a7bc0c47a0a05 | p@chr15:65174546..65174583, - |
| 3.3e-85 | FFCP PHASE1:Hg19::chr4:159727272..159727307,+#_a1134b6d92a492695032002c7df561b5 | p7@FNIP2 |
| 3.3e-85 | FFCP PHASE2:Hg19::chr4:159727272..159727307,+#_a1134b6d92a492695032002c7df561b5 | p7@FNIP2 |
| 8.06e-85 | FFCP PHASE1:Hg19::chr3:149531627..149531651,+#_e39090107d617e8157ac6525627f6b8b | p7@RNF13 |
| 8.06e-85 | FFCP PHASE2:Hg19::chr3:149531627..149531651,+#_e39090107d617e8157ac6525627f6b8b | p7@RNF13 |
| 8.09e-85 | FFCP PHASE1:Hg19::chr4:185314125..185314143,-#_0f2ff79faa259b419168fe360213955c | p@chr4:185314125..185314143, - |
| 8.09e-85 | FFCP PHASE2:Hg19::chr4:185314125..185314143,-#_0f2ff79faa259b419168fe360213955c | p@chr4:185314125..185314143, - |
| 1.34e-84 | FFCP PHASE1:Hg19::chr19:52299474..52299504,-#_6956f8a0e952cca83908aea49b11bb83 | p@chr19:52299474..52299504, - |
| 1.34e-84 | FFCP PHASE2:Hg19::chr19:52299474..52299504,-#_6956f8a0e952cca83908aea49b11bb83 | p@chr19:52299474..52299504, - |
| 1.96e-84 | FFCP PHASE2:Hg19::chr5:131280548..131280574,-#_71264e52e75990ae07fa5300fde1c97e | p1@ENST00000425320 |
| 1.96e-84 | FFCP PHASE1:Hg19::chr5:131280548..131280574,-#_71264e52e75990ae07fa5300fde1c97e | p1@ENST00000425320 |
| 4.6e-84 | FFCP PHASE2:Hg19::chr19:18288064..18288080,+#_6b383c67a1db297f985bd4b8d7f69979 | p@chr19:18288064..18288080, + |
| 4.6e-84 | FFCP PHASE1:Hg19::chr19:18288064..18288080,+#_6b383c67a1db297f985bd4b8d7f69979 | p@chr19:18288064..18288080, + |
| 6.57e-84 | FFCP PHASE2:Hg19::chr1:161188686..161188721,+#_fcb3099afadd366f74d77c5c8b7566e4 | p@chr1:161188686..161188721, + |
| 6.57e-84 | FFCP PHASE1:Hg19::chr1:161188686..161188721,+#_fcb3099afadd366f74d77c5c8b7566e4 | p@chr1:161188686..161188721, + |
| 9.62e-84 | FFCP PHASE2:Hg19::chr10:73648356..73648408,-#_6d2c8ae4c82457e586d5e99f8e0d9a8a | p@chr10:73648356..73648408, - |
| 9.62e-84 | FFCP PHASE1:Hg19::chr10:73648356..73648408,-#_6d2c8ae4c82457e586d5e99f8e0d9a8a | p@chr10:73648356..73648408, - |
| 9.89e-84 | FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_38e1ac7c46caf1ac874922693a7f2c26 | p@chr2:119726719..119726744, + |
| 9.89e-84 | FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_38e1ac7c46caf1ac874922693a7f2c26 | p@chr2:119726719..119726744, + |
| 1.39e-83 | FFCP PHASE1:Hg19::chr4:185314151..185314178,-#_39db7ffe7b11afad6e5f414869833320 | p@chr4:185314151..185314178, - |
| 1.39e-83 | FFCP PHASE2:Hg19::chr4:185314151..185314178,-#_39db7ffe7b11afad6e5f414869833320 | p@chr4:185314151..185314178, - |
| 3.45e-83 | FFCP PHASE2:Hg19::chr4:185314188..185314207,-#_f990b94e0dc07e0eece6a53d370ec15b | p@chr4:185314188..185314207, - |
| 3.45e-83 | FFCP PHASE1:Hg19::chr4:185314188..185314207,-#_f990b94e0dc07e0eece6a53d370ec15b | p@chr4:185314188..185314207, - |
| 8.52e-83 | FFCP PHASE2:Hg19::chrX:37664331..37664352,+#_21b5c394730fae55307b81404d217e5a | p@chrX:37664331..37664352, + |
| 8.52e-83 | FFCP PHASE1:Hg19::chrX:37664331..37664352,+#_21b5c394730fae55307b81404d217e5a | p@chrX:37664331..37664352, + |
| 9.21e-83 | FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_cfa91bc91b5bb7ed0951104c95c85562 | p2@ZEB2-AS1 |
| 9.21e-83 | FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_cfa91bc91b5bb7ed0951104c95c85562 | p2@ZEB2-AS1 |
| 9.87e-83 | FFCP PHASE2:Hg19::chrX:153286067..153286101,-#_bc47cc9c6061d2f99c762e999b7b0bec | p@chrX:153286067..153286101, - |
| 9.87e-83 | FFCP PHASE1:Hg19::chrX:153286067..153286101,-#_bc47cc9c6061d2f99c762e999b7b0bec | p@chrX:153286067..153286101, - |
| 1.39e-82 | FFCP PHASE1:Hg19::chr8:116588888..116588904,+#_4514bb2db51003c99c6268aa46b76cf1 | p@chr8:116588888..116588904, + |
| 1.39e-82 | FFCP PHASE2:Hg19::chr8:116588888..116588904,+#_4514bb2db51003c99c6268aa46b76cf1 | p@chr8:116588888..116588904, + |
| 1.48e-82 | FFCP PHASE2:Hg19::chr1:145610717..145610730,+#_2edfbb9c9710130bd7f53166656a4313 | p4@RNF115 |
| 1.48e-82 | FFCP PHASE1:Hg19::chr1:145610717..145610730,+#_2edfbb9c9710130bd7f53166656a4313 | p4@RNF115 |
| 2.2e-82 | FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_32215ef285671a93b8fb85c8a269aa04 | p8@CTSS |
| 2.2e-82 | FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_32215ef285671a93b8fb85c8a269aa04 | p8@CTSS |
| 2.48e-82 | FFCP PHASE2:Hg19::chr2:129283966..129283970,+#_a2794dbfa6b8d8412ec6df646929f736 | p@chr2:129283966..129283970, + |
| 2.48e-82 | FFCP PHASE1:Hg19::chr2:129283966..129283970,+#_a2794dbfa6b8d8412ec6df646929f736 | p@chr2:129283966..129283970, + |
| 3.79e-82 | FFCP PHASE2:Hg19::chr1:161188826..161188842,+#_5dec0ad7722bb39dfdb66b2f9d1516fa | p@chr1:161188826..161188842, + |
| 3.79e-82 | FFCP PHASE1:Hg19::chr1:161188826..161188842,+#_5dec0ad7722bb39dfdb66b2f9d1516fa | p@chr1:161188826..161188842, + |
| 4.48e-82 | FFCP PHASE1:Hg19::chr1:26602990..26603008,+#_f95f36f35aac45ca5edc89a933c34e6d | p@chr1:26602990..26603008, + |
| 4.48e-82 | FFCP PHASE2:Hg19::chr1:26602990..26603008,+#_f95f36f35aac45ca5edc89a933c34e6d | p@chr1:26602990..26603008, + |
| 4.69e-82 | FFCP PHASE1:Hg19::chr19:18288914..18288931,-#_ad4af3e1c3cc748c3f87ebe008d84398 | p5@CU676849, p5@CU689079 |
| 4.69e-82 | FFCP PHASE2:Hg19::chr19:18288914..18288931,-#_ad4af3e1c3cc748c3f87ebe008d84398 | p5@CU676849, p5@CU689079 |
| 5.1e-82 | FFCP PHASE2:Hg19::chr1:108593061..108593077,+#_4d7d0c6993872a3d7086d50ed92cb34a | p@chr1:108593061..108593077, + |
| 5.1e-82 | FFCP PHASE1:Hg19::chr1:108593061..108593077,+#_4d7d0c6993872a3d7086d50ed92cb34a | p@chr1:108593061..108593077, + |
| 1.66e-81 | FFCP PHASE2:Hg19::chr19:18285955..18285972,+#_5e1cbf216cbeb79f986e539c4dbe85fe | p@chr19:18285955..18285972, + |
| 1.66e-81 | FFCP PHASE1:Hg19::chr19:18285955..18285972,+#_5e1cbf216cbeb79f986e539c4dbe85fe | p@chr19:18285955..18285972, + |
| 2.34e-81 | FFCP PHASE2:Hg19::chr20:1517991..1518011,-#_bab3473bca6f08f11c9a3644c415500d | p@chr20:1517991..1518011, - |
| 2.34e-81 | FFCP PHASE1:Hg19::chr20:1517991..1518011,-#_bab3473bca6f08f11c9a3644c415500d | p@chr20:1517991..1518011, - |
| 9.54e-81 | FFCP PHASE2:Hg19::chr19:18288514..18288554,+#_1d5a826bc7f34437ccbc3717fd6bd7e8 | p6@IFI30 |
| 9.54e-81 | FFCP PHASE1:Hg19::chr19:18288514..18288554,+#_1d5a826bc7f34437ccbc3717fd6bd7e8 | p6@IFI30 |
| 1.15e-80 | FFCP PHASE2:Hg19::chr19:18283959..18283993,+#_94e01985e473eccc11af5440e5e0de9f | p@chr19:18283959..18283993, + |
| 1.15e-80 | FFCP PHASE1:Hg19::chr19:18283959..18283993,+#_94e01985e473eccc11af5440e5e0de9f | p@chr19:18283959..18283993, + |
| 1.17e-80 | FFCP PHASE1:Hg19::chr5:180242576..180242585,-#_ec94e59656863146e1fa24fbcc053e0b | p12@MGAT1 |
| 1.17e-80 | FFCP PHASE2:Hg19::chr5:180242576..180242585,-#_ec94e59656863146e1fa24fbcc053e0b | p12@MGAT1 |
| 1.31e-80 | FFCP PHASE2:Hg19::chr8:53373491..53373506,-#_c4e4f2c9aa8b575ee2af8c10bddd369c | p4@ST18 |
| 1.31e-80 | FFCP PHASE1:Hg19::chr8:53373491..53373506,-#_c4e4f2c9aa8b575ee2af8c10bddd369c | p4@ST18 |
| 1.35e-80 | FFCP PHASE1:Hg19::chr7:6066589..6066602,-#_615b907dcb59212650408d6f2d87ae6b | p4@EIF2AK1 |
| 1.35e-80 | FFCP PHASE2:Hg19::chr7:6066589..6066602,-#_615b907dcb59212650408d6f2d87ae6b | p4@EIF2AK1 |
| 2.02e-80 | FFCP PHASE2:Hg19::chr17:7483714..7483726,+#_66e1ec0cd741b1e73799d1d62b8bea6a | p@chr17:7483714..7483726, + |
| 2.02e-80 | FFCP PHASE1:Hg19::chr17:7483714..7483726,+#_66e1ec0cd741b1e73799d1d62b8bea6a | p@chr17:7483714..7483726, + |
| 2.73e-80 | FFCP PHASE1:Hg19::chr19:51625924..51625942,+#_bdd94e74ca15a57f37a062cd6c196f45 | p@chr19:51625924..51625942, + |
| 2.73e-80 | FFCP PHASE2:Hg19::chr19:51625924..51625942,+#_bdd94e74ca15a57f37a062cd6c196f45 | p@chr19:51625924..51625942, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Organ entity that may have different tissue compositions at different stages and is typically involved in mechanical support.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
