Personal tools

UBERON:0003128: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003128
|alt_id=
|name=cranium
|anatomical_img_id=FMA:71325
|namespace=
|def="Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)]
|xref=BTO:0001328;;EFO:0000831;;EHDAA:6029;;FMA:71325;;MA:0000316;;MAT:0000340;;MIAA:0000340;;OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA;;SCTID:181889008;;VHOG:0000334
|is_a=UBERON:0000075
|synonym="bones of cranium" EXACT [FMA:71325];;"calvarium" RELATED [BTO:0001328];;"epicranial plate" RELATED [];;"ossa cranii" EXACT [FMA:71325, FMA:TA];;"skeletal system of head" RELATED [];;"skull minus mandible" EXACT [];;"upper part of skull" EXACT []
|comment=The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP]. AO notes: the inclusion of the FMA class here is probably not quite correct, as this class includes as parts sutures, whereas this is not part of the bones of the cranium
|comment=The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP]. AO notes: the inclusion of the FMA class here is probably not quite correct, as this class includes as parts sutures, whereas this is not part of the bones of the cranium
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)]
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003128
|is_a=UBERON:0000075
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=cranium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003129
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001684
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001684
|is_obsolete=
|subset=uberon_slim;;vertebrate_core
|preceded_by=
|synonym="bones of cranium" EXACT [FMA:71325];;"calvarium" RELATED [BTO:0001328];;"epicranial plate" RELATED [];;"ossa cranii" EXACT [FMA:71325, FMA:TA];;"skeletal system of head" RELATED [];;"skull minus mandible" EXACT [];;"upper part of skull" EXACT []
|union_of=
|xref=BTO:0001328;;EFO:0000831;;EHDAA:6029;;FMA:71325;;MA:0000316;;MAT:0000340;;MIAA:0000340;;OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA;;SCTID:181889008;;VHOG:0000334
}}
}}

Latest revision as of 17:38, 12 September 2014

Name:cranium
Namespace:FANTOM
Definition:"Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)]
Xrefs:
links:

BTO:0001328
EFO:0000831
EHDAA:6029
FMA:71325
MA:0000316
MAT:0000340
MIAA:0000340
OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA
SCTID:181889008

VHOG:0000334
Synonyms: "bones of cranium" EXACT [FMA:71325]
"calvarium" RELATED [BTO:0001328]
"epicranial plate" RELATED []
"ossa cranii" EXACT [FMA:71325, FMA:TA]
"skeletal system of head" RELATED []
"skull minus mandible" EXACT []
"upper part of skull" EXACT []
Comments:The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP]. AO notes: the inclusion of the FMA class here is probably not quite correct, as this class includes as parts sutures, whereas this is not part of the bones of the cranium
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000075(subdivision of skeletal system)
part_of:UBERON:0003129(skull)



Children

part of:UBERON:0001703 (neurocranium),UBERON:0004339 (calvarium),UBERON:0004766 (cranial bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10195-103E6 (olfactory region, adult)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 10195-103E6 (olfactory region, adult)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003128 (cranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_c07e35bfbcad3a9ca1580153639f40d6p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_c07e35bfbcad3a9ca1580153639f40d6p4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_c07e35bfbcad3a9ca1580153639f40d6p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_c07e35bfbcad3a9ca1580153639f40d6p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_c07e35bfbcad3a9ca1580153639f40d6p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_c07e35bfbcad3a9ca1580153639f40d6p5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_c07e35bfbcad3a9ca1580153639f40d6p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_c07e35bfbcad3a9ca1580153639f40d6p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_c07e35bfbcad3a9ca1580153639f40d6p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Grxcr1
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_c07e35bfbcad3a9ca1580153639f40d6p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_c07e35bfbcad3a9ca1580153639f40d6p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_c07e35bfbcad3a9ca1580153639f40d6p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_c07e35bfbcad3a9ca1580153639f40d6p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_c07e35bfbcad3a9ca1580153639f40d6p6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_c07e35bfbcad3a9ca1580153639f40d6p9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_c07e35bfbcad3a9ca1580153639f40d6p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_c07e35bfbcad3a9ca1580153639f40d6p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_c07e35bfbcad3a9ca1580153639f40d6p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_c07e35bfbcad3a9ca1580153639f40d6p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_c07e35bfbcad3a9ca1580153639f40d6p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Otol1
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_c07e35bfbcad3a9ca1580153639f40d6p7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:63079735..63079745, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003128&oldid=3277527"