FF:588-5H2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004714 | |||
|accession_numbers=CAGE;DRX009045;DRR009919;DRZ001344;DRZ002727;DRZ012694;DRZ014077 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001911,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0003100,UBERON:0002330 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001911,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0003100,UBERON:0002330 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:103264213..103264233,+!p1@Elf5!2.88!752.20!Elf5;;chr2:103264245..103264268,+!p2@Elf5!2.65!447.85!Elf5;;chr13:72766250..72766273,+!p1@Irx2!2.52!502.76!Irx2;;chr2:103264277..103264292,+!p3@Elf5!2.44!273.18!Elf5;;chr2:103143336..103143367,-!p1@Ehf!2.16!228.48!Ehf;;chr11:5420655..5420659,+!p3@Xbp1!1.93!84.99!Xbp1;;chr13:72766279..72766296,+!p2@Irx2!1.90!114.24!Irx2;;chr13:72101178..72101203,-!p1@Irx1!1.77!88.58!Irx1;;chr15:78994907..78994926,-!p1@Sox10!1.74!133.55!Sox10;;chr5:144951153..144951203,+!p1@Bhlha15!1.73!75.05!Bhlha15;;chr2:9800207..9800234,-!p1@Gata3!1.72!152.32!Gata3;;chr15:97738692..97738747,-!p1@Vdr!1.68!242.82!Vdr;;chr2:172375081..172375105,+!p1@Tfap2c!1.68!46.91!Tfap2c;;chr13:72766234..72766243,+!p3@Irx2!1.61!39.46!Irx2;;chr13:72101161..72101177,-!p2@Irx1!1.60!52.98!Irx1;;chr11:90250944..90250982,-!p2@Hlf!1.55!56.29!Hlf;;chr2:103143315..103143328,-!p2@Ehf!1.43!25.94!Ehf;;chr15:50714356..50714368,-!p14@Trps1!1.41!24.83!Trps1;;chr11:100720767..100720797,+!p4@Stat5a!1.39!23.45!Stat5a;;chr9:31720843..31720888,-!p1@Barx2!1.33!22.63!Barx2;;chr13:40826961..40827001,-!p4@Tfap2a!1.31!19.59!Tfap2a;;chr11:90252223..90252240,-!p1@Hlf!1.25!137.69!Hlf;;chr11:5420954..5420969,+!p2@Xbp1!1.23!193.43!Xbp1;;chr13:40829137..40829205,-!p1@Tfap2a!1.22!17.38!Tfap2a;;chr12:25257265..25257294,+!p2@Grhl1!1.22!15.45!Grhl1;;chr15:50721942..50721987,-!p13@Trps1!1.21!17.66!Trps1;;chr12:25257141..25257173,+!p1@Grhl1!1.19!29.80!Grhl1;;chr8:94881733..94881790,+!p1@Irx5!1.18!27.32!Irx5;;chr15:50721211..50721234,-!p6@Trps1!1.18!23.18!Trps1;;chr11:90250894..90250916,-!p5@Hlf!1.13!12.42!Hlf;;chr15:50721515..50721540,-!p3@Trps1!1.12!35.32!Trps1;;chr8:94325321..94325366,-!p1@Irx3!1.12!29.80!Irx3;;chr11:60023912..60023930,-!p1@Srebf1!1.11!289.46!Srebf1;;chr15:50721640..50721654,-!p7@Trps1!1.11!18.76!Trps1;;chr11:34108085..34108092,-!p1@Foxi1!1.11!11.87!Foxi1;;chr17:14011485..14011507,+!p2@Mllt4!1.09!11.31!Mllt4;;chr4:119406412..119406439,+!p2@Hivep3!1.08!21.80!Hivep3;;chr13:30841099..30841116,+!p1@Irf4!1.07!17.11!Irf4;;chr13:72101141..72101158,-!p3@Irx1!1.05!12.69!Irx1;;chr9:69137716..69137744,+!p1@Rora!1.04!63.47!Rora;;chr8:94325814..94325839,-!p2@Irx3!1.04!21.25!Irx3;;chr16:25801993..25802014,+!p1@Trp63!1.04!9.93!Trp63;;chr19:55816414..55816425,+!p4@Tcf7l2!1.01!48.84!Tcf7l2;;chr15:50721239..50721260,-!p9@Trps1!1.00!15.73!Trps1;;chr11:100720806..100720820,+!p6@Stat5a!0.99!8.83!Stat5a;;chr19:55816300..55816332,+!p1@Tcf7l2!0.97!401.49!Tcf7l2;;chr4:119406389..119406411,+!p1@Hivep3!0.97!41.94!Hivep3;;chr2:9809357..9809371,-!p2@Gata3!0.97!8.28!Gata3;;chr7:87170879..87170914,+!p2@Zfp710!0.95!19.04!Zfp710;;chr15:97741053..97741072,-!p2@Vdr!0.94!7.73!Vdr;;chr11:60034039..60034050,-!p4@Srebf1!0.94!7.73!Srebf1;;chr15:50720601..50720630,-!p2@Trps1!0.93!18.49!Trps1;;chr11:106128936..106128955,-!p4@Smarcd2!0.93!8.83!Smarcd2;;chr6:115372058..115372085,+!p3@Pparg!0.93!7.45!Pparg;;chr2:172375136..172375149,+!p2@Tfap2c!0.93!7.45!Tfap2c;;chr6:51382677..51382783,+!p1@Nfe2l3!0.91!19.04!Nfe2l3;;chr2:173044380..173044432,-!p1@Zbp1!0.91!17.38!Zbp1;;chr15:50721503..50721514,-!p15@Trps1!0.91!8.83!Trps1;;chr11:90249521..90249551,-!p3@Hlf!0.91!7.17!Hlf;;chr3:94176733..94176794,+!p1@Rorc!0.90!56.84!Rorc;;chr10:5734525..5734569,-!p3@Esr1!0.89!11.59!Esr1;;chr1:38721792..38721845,-!p1@Aff3!0.89!8.55!Aff3;;chr5:135582751..135582788,+!p1@Mlxipl!0.88!27.87!Mlxipl;;chr2:74529970..74529997,+!p1@Hoxd10!0.87!6.35!Hoxd10;;chr16:25802129..25802142,+!p3@Trp63!0.87!6.35!Trp63;;chr15:50721616..50721632,-!p4@Trps1!0.86!17.38!Trps1;;chr8:94325847..94325869,-!p3@Irx3!0.86!10.21!Irx3;;chr11:100721761..100721851,+!p1@Stat5a!0.85!46.91!Stat5a;;chr11:11586218..11586285,+!p1@Ikzf1!0.85!20.42!Ikzf1;;chr12:25257176..25257190,+!p3@Grhl1!0.85!6.90!Grhl1;;chr1:19199236..19199258,+!p1@Tfap2b!0.85!6.07!Tfap2b;;chr9:48644037..48644067,-!p2@Zbtb16!0.82!14.90!Zbtb16;;chr10:30375579..30375616,-!p3@Ncoa7!0.82!14.07!Ncoa7;;chr11:121380640..121380655,-!p1@Zfp750!0.82!9.66!Zfp750;;chr19:25746898..25746910,+!p1@Dmrt2!0.82!8.55!Dmrt2;;chr5:104121453..104121479,+!p4@Aff1!0.81!26.77!Aff1;;chr6:133986088..133986122,+!p4@Etv6!0.81!25.11!Etv6;;chr11:121380594..121380609,-!p2@Zfp750!0.81!9.93!Zfp750;;chr9:51021788..51021802,+!p1@Pou2af1!0.81!6.62!Pou2af1;;chr2:103264977..103264986,+!p6@Elf5!0.81!5.52!Elf5;;chr11:100721640..100721658,+!p2@Stat5a!0.80!5.24!Stat5a;;chr4:44723559..44723593,-!p1@Pax5!0.80!5.24!Pax5;;chr13:44825008..44825066,+!p5@Jarid2!0.79!10.76!Jarid2;;chr4:119486912..119486954,+!p3@Hivep3!0.79!9.38!Hivep3;;chr7:51787434..51787448,-!p1@Spib!0.79!7.73!Spib;;chr13:73397958..73397994,+!p1@Irx4!0.78!4.97!Irx4;;chr11:90250999..90251013,-!p8@Hlf!0.78!4.97!Hlf;;chr10:128082840..128082872,-!p1@Ikzf4!0.77!6.07!Ikzf4;;chr7:35904304..35904320,+!p1@Cebpa!0.76!106.79!Cebpa;;chr19:55816398..55816409,+!p5@Tcf7l2!0.76!24.56!Tcf7l2;;chr12:37835141..37835194,+!p1@Meox2!0.76!16.00!Meox2;;chr12:87811081..87811100,+!p2@Esrrb!0.76!4.69!Esrrb;;chr14:79915425..79915501,+!p1@Elf1!0.75!44.98!Elf1;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.75!14.35!Tfcp2l1;;chr9:69137672..69137702,+!p2@Rora!0.74!20.97!Rora;;chr19:55816770..55816793,+!p2@Tcf7l2!0.73!42.49!Tcf7l2;;chr6:90412582..90412601,+!p1@Klf15!0.73!22.63!Klf15;;chr6:145814003..145814056,-!p1@Bhlhe41!0.73!13.80!Bhlhe41;;chr15:97741033..97741048,-!p3@Vdr!0.73!4.41!Vdr;;chr8:94881686..94881700,+!p4@Irx5!0.73!4.41!Irx5;;chr4:148275237..148275311,+!p2@Casz1!0.72!19.59!Casz1;;chr18:39648811..39648818,-!p4@Nr3c1!0.72!8.00!Nr3c1;;chr11:98636531..98636559,-!p1@Nr1d1!0.71!26.49!Nr1d1;;chr10:5734677..5734702,-!p4@Esr1!0.71!4.14!Esr1;;chr6:115372099..115372121,+!p5@Pparg!0.71!4.14!Pparg;;chr2:9800094..9800108,-!p3@Gata3!0.71!4.14!Gata3;;chr15:102828658..102828678,+!p1@Hoxc6!0.71!4.14!Hoxc6;;chr13:37918486..37918575,+!p2@Rreb1!0.70!28.15!Rreb1;;chr4:149943593..149943605,+!p5@Rere!0.70!7.73!Rere;;chr8:94325486..94325510,-!p4@Irx3!0.70!5.52!Irx3;;chr2:74549968..74549996,+!p1@Hoxd3!0.70!5.24!Hoxd3;;chr2:9809402..9809422,-!p5@Gata3!0.69!3.86!Gata3;;chr19:55816546..55816556,+!p3@Tcf7l2!0.68!16.28!Tcf7l2;;chr3:89197057..89197114,-!p1@Zbtb7b!0.68!14.35!Zbtb7b;;chr7:20162663..20162678,+!p1@Zfp296!0.68!5.24!Zfp296;;chr8:94881872..94881887,+!p2@Irx5!0.68!4.14!Irx5;;chr4:82151653..82151706,-!p2@Nfib!0.67!120.03!Nfib;;chr15:50721588..50721610,-!p1@Trps1!0.67!43.05!Trps1;;chr11:121380611..121380625,-!p3@Zfp750!0.67!4.69!Zfp750;;chr6:133985839..133985915,+!p1@Etv6!0.66!69.81!Etv6;;chr13:31898637..31898653,+!p2@Foxc1!0.66!6.90!Foxc1;;chr7:148452314..148452329,-!p1@Irf7!0.65!28.15!Irf7;;chr1:52176406..52176433,+!p2@Stat1!0.65!9.66!Stat1;;chr8:87297280..87297326,-!p2@Nfix!0.65!9.11!Nfix;;chr9:48644013..48644027,-!p5@Zbtb16!0.65!4.41!Zbtb16;;chr11:52096066..52096081,-!p2@Tcf7!0.65!4.41!Tcf7;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.64!15.18!Ppp1r13l;;chr10:5636374..5636421,-!p1@Esr1!0.64!4.41!Esr1;;chr2:91864661..91864686,-!p1@Creb3l1!0.63!85.26!Creb3l1;;chr13:37918773..37918818,+!p3@Rreb1!0.63!16.00!Rreb1;;chr2:91077034..91077078,-!p2@Ddb2!0.63!8.00!Ddb2;;chr12:37835120..37835133,+!p2@Meox2!0.63!4.97!Meox2;;chr13:40825465..40825469,-!p2@Tfap2a!0.63!3.31!Tfap2a;;chr1:19199021..19199048,+!p8@Tfap2b!0.63!3.31!Tfap2b;;chr8:94325779..94325791,-!p7@Irx3!0.63!3.31!Irx3;;chr13:37949830..37949861,+!p7@Rreb1!0.62!6.62!Rreb1;;chr2:127347067..127347093,-!p1@Kcnip3!0.62!5.79!Kcnip3;;chr15:37162834..37162849,+!p2@Grhl2!0.62!3.86!Grhl2;;chr14:22808697..22808715,-!p4@Zfp503!0.62!3.86!Zfp503;;chr17:28369739..28369774,+!p2@Ppard!0.61!11.04!Ppard;;chr15:50721777..50721803,-!p11@Trps1!0.61!4.97!Trps1;;chr2:172376261..172376267,+!p4@Tfap2c!0.61!3.04!Tfap2c;;chr1:36364590..36364608,+!p1@Arid5a!0.60!36.15!Arid5a;;chr11:60034052..60034134,-!p2@Srebf1!0.59!84.16!Srebf1;;chr4:97444012..97444045,+!p4@Nfia!0.59!26.49!Nfia;;chr6:145813905..145813932,-!p2@Bhlhe41!0.59!6.07!Bhlhe41;;chr16:92697560..92697592,-!p2@Runx1!0.58!21.25!Runx1;;chr1:165243792..165243808,-!p1@Prrx1!0.58!11.59!Prrx1;;chr2:91035197..91035237,-!p1@Nr1h3!0.58!6.62!Nr1h3;;chr15:37162796..37162828,+!p1@Grhl2!0.58!5.24!Grhl2;;chr9:69137648..69137656,+!p5@Rora!0.58!4.14!Rora;;chr11:90251852..90251855,-!p4@Hlf!0.58!3.59!Hlf;;chr13:40824310..40824314,-!p6@Tfap2a!0.58!2.76!Tfap2a;;chr6:52190467..52190500,-!p1@Hoxa10!0.58!2.76!Hoxa10;;chr2:9809374..9809396,-!p4@Gata3!0.58!2.76!Gata3;;chr6:133985657..133985707,+!p3@Etv6!0.57!18.49!Etv6;;chr15:50720589..50720600,-!p12@Trps1!0.57!3.86!Trps1;;chr1:135557526..135557551,-!p1@Zbed6!0.56!4.69!Zbed6;;chr14:67853632..67853674,+!p3@Ebf2!0.56!3.31!Ebf2;;chr8:87643578..87643593,-!p1@Zfp791!0.55!6.07!Zfp791;;chr3:99057269..99057306,+!p1@Tbx15!0.55!3.31!Tbx15;;chr19:5560600..5560617,-!p1@Ovol1!0.55!3.31!Ovol1;;chr15:61817095..61817111,+!p1@Myc!0.54!189.84!Myc;;chr11:112643496..112643562,+!p1@Sox9!0.54!117.82!Sox9;;chr13:31898729..31898761,+!p1@Foxc1!0.54!7.17!Foxc1;;chr12:113917014..113917034,+!p1@Zbtb42!0.54!4.97!Zbtb42;;chr2:173044357..173044377,-!p2@Zbp1!0.54!3.86!Zbp1;;chr12:25257298..25257323,+!p5@Grhl1!0.54!2.48!Grhl1;;chr5:144951136..144951139,+!p2@Bhlha15!0.54!2.48!Bhlha15;;chr10:5636354..5636373,-!p2@Esr1!0.54!2.48!Esr1;;chr11:98407264..98407295,-!p1@Ikzf3!0.54!2.48!Ikzf3;;chr4:44723520..44723544,-!p2@Pax5!0.54!2.48!Pax5;;chr2:74550015..74550057,+!p2@Hoxd3!0.54!2.48!Hoxd3;;chr2:9809451..9809469,-!p6@Gata3!0.54!2.48!Gata3;;chr9:31720903..31720918,-!p2@Barx2!0.54!2.48!Barx2;;chr9:31721051..31721068,-!p3@Barx2!0.54!2.48!Barx2;;chr11:5420973..5420992,+!p1@Xbp1!0.53!329.47!Xbp1;;chr15:61816932..61816952,+!p2@Myc!0.53!25.11!Myc;;chr1:194979315..194979359,+!p1@Irf6!0.53!18.49!Irf6;;chr1:137155026..137155042,-!p1@Elf3!0.53!17.66!Elf3;;chr15:50721544..50721558,-!p5@Trps1!0.53!6.35!Trps1;;chr3:130815703..130815721,+!p2@Lef1!0.53!3.04!Lef1;;chr14:67853425..67853454,+!p1@Ebf2!0.52!3.59!Ebf2;;chr15:102087880..102087927,-!p2@Rarg!0.51!6.07!Rarg;;chr15:102797225..102797243,+!p2@Hoxc10!0.51!2.21!Hoxc10;;chr1:19202352..19202354,+!p2@Tfap2b!0.51!2.21!Tfap2b;;chr11:90252108..90252134,-!p6@Hlf!0.51!2.21!Hlf;;c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6;;chr10:79862175..79862221,-!p1@Mbd3!0.12!16.00!Mbd3;;chr17:84105551..84105600,+!p1@Mta3!0.12!12.69!Mta3;;chr17:35372700..35372762,-!p1@Nfkbil1!0.12!12.14!Nfkbil1;;chr11:70501419..70501483,-!p1@Camta2,p1@LOC100048818!0.12!11.59!Camta2;;chr19:5637708..5637730,+!p3@Rela!0.12!11.31!Rela;;chr7:13483149..13483234,+!p1@Zscan22!0.12!10.76!Zscan22;;chr15:57908011..57908070,-!p2@Zhx1,p3@9130401M01Rik!0.12!10.21!Zhx1;;chr17:28369668..28369734,+!p1@Ppard!0.12!9.93!Ppard;;chr15:81633165..81633188,+!p2@Tef!0.12!9.11!Tef;;chr7:50835064..50835134,+!p1@Zfp719!0.12!8.55!Zfp719;;chr4:97444590..97444607,+!p6@Nfia!0.12!8.00!Nfia;;chr14:14845141..14845207,+!p1@Atxn7!0.12!7.73!Atxn7;;chr9:31088110..31088151,+!p1@Prdm10!0.12!7.45!Prdm10;;chr3:94641624..94641645,+!p2@Pogz!0.12!7.45!Pogz;;chr10:127176572..127176648,+!p1@Zbtb39!0.12!6.90!Zbtb39;;chr16:22439654..22439676,-!p2@Etv5!0.12!6.35!Etv5;;chr19:46379199..46379301,+!p1@Nfkb2!0.12!6.07!Nfkb2;;chr6:131338483..131338494,-!p5@Csda!0.12!5.52!Csda;;chr11:69579472..69579529,+!p1@Zbtb4!0.12!5.24!Zbtb4;;chr15:76709732..76709764,+!p1@Zfp7!0.12!4.97!Zfp7;;chr6:39068210..39068251,-!p1@Parp12!0.12!4.69!Parp12;;chr7:135020060..135020124,-!p2@Zfp668!0.12!4.41!Zfp668;;chr13:67370029..67370067,-!p1@Zfp458!0.12!4.41!Zfp458;;chr12:77470507..77470572,-!p2@Zbtb25!0.12!3.86!Zbtb25;;chr2:128769721..128769770,-!p1@Zc3h8!0.12!3.86!Zc3h8;;chr9:63605978..63605997,-!p2@Smad3!0.12!3.86!Smad3;;chr3:5218629..5218684,+!p1@Zfhx4!0.12!3.04!Zfhx4;;chr4:131817511..131817537,-!p2@Gmeb1!0.12!3.04!Gmeb1;;chr7:13063643..13063662,+!p2@Zfp606!0.12!2.21!Zfp606;;chr6:47827547..47827568,+!p4@Zfp282!0.12!1.93!Zfp282;;chr17:13897299..13897342,+!p3@Mllt4!0.12!1.93!Mllt4;;chr12:87027598..87027652,+!p1@Batf!0.12!1.93!Batf;;chr8:4613211..4613224,+!p3@Zfp958!0.12!1.66!Zfp958;;chr5:3647720..3647733,-!p3@Gatad1!0.12!1.38!Gatad1;;chr4:133310214..133310231,-!p11@Arid1a!0.12!1.10!Arid1a;;chr18:3337399..3337422,-!p11@Crem!0.12!1.10!Crem;;chr17:71200415..71200427,-!p5@Tgif1!0.12!1.10!Tgif1;;chr7:52963269..52963305,+!p4@Dbp!0.12!0.83!Dbp;;chr11:44431016..44431045,+!p5@Ebf1!0.12!0.83!Ebf1;;chr10:107769229..107769238,+!p3@Pawr!0.12!0.83!Pawr;;chr16:43510301..43510313,+!p24@Zbtb20!0.12!0.55!Zbtb20;;chr19:23215446..23215457,+!p8@Klf9!0.12!0.55!Klf9;;chr15:103164702..103164778,-!p3@Zfp385a!0.12!0.55!Zfp385a;;chr14:32979290..32979309,+!p3@Gm6768,p3@Ncoa4!0.12!0.55!Ncoa4;;chr6:52167459..52167492,-!p1@Hoxa7!0.12!0.55!Hoxa7;;chr6:52664406..52664434,+!p3@Tax1bp1!0.12!0.55!Tax1bp1;;chr9:30838314..30838336,+!p4@Zbtb44!0.12!0.55!Zbtb44;;chr4:133312695..133312709,-!p19@Arid1a!0.12!0.55!Arid1a;;chr4:108132526..108132533,+!p11@Zcchc11!0.12!0.55!Zcchc11;;chr2:90936886..90936898,+!p5@Sfpi1!0.12!0.55!Sfpi1;;chr15:36937029..36937108,-!p1@Gm10193,p1@Zfp706!0.11!143.76!Zfp706;;chr18:70727922..70728052,+!p1@Mbd2!0.11!41.11!Mbd2;;chr4:149655682..149655742,+!p1@Rere!0.11!36.15!Rere;;chr13:56804344..56804473,+!p1@Smad5!0.11!34.49!Smad5;;chr17:13897509..13897607,+!p1@Mllt4!0.11!33.94!Mllt4;;chr15:81641878..81641921,+!p1@Tef!0.11!29.80!Tef;;chr17:4995902..4995959,+!p1@Arid1b!0.11!26.77!Arid1b;;chr13:59924433..59924504,-!p1@Zcchc6!0.11!25.39!Zcchc6;;chr2:73730645..73730673,-!p2@Atf2,p2@LOC100047997!0.11!23.45!Atf2;;chr14:99697871..99697934,+!p1@Klf5!0.11!22.35!Klf5;;chr10:80599279..80599353,+!p1@Zbtb7a!0.11!20.42!Zbtb7a;;chr6:83391606..83391658,-!p1@Tet3!0.11!19.04!Tet3;;chr1:181476358..181476391,-!p1@Tfb2m!0.11!17.38!Tfb2m;;chr13:21545583..21545630,-!p1@Zfp187!0.11!14.62!Zfp187;;chr11:97524509..97524595,+!p1@Mllt6!0.11!13.24!Mllt6;;chr11:106134241..106134320,-!p2@Smarcd2!0.11!12.69!Smarcd2;; | |expression_enrichment_score=chr2:103264213..103264233,+!p1@Elf5!2.88!752.20!Elf5;;chr2:103264245..103264268,+!p2@Elf5!2.65!447.85!Elf5;;chr13:72766250..72766273,+!p1@Irx2!2.52!502.76!Irx2;;chr2:103264277..103264292,+!p3@Elf5!2.44!273.18!Elf5;;chr2:103143336..103143367,-!p1@Ehf!2.16!228.48!Ehf;;chr11:5420655..5420659,+!p3@Xbp1!1.93!84.99!Xbp1;;chr13:72766279..72766296,+!p2@Irx2!1.90!114.24!Irx2;;chr13:72101178..72101203,-!p1@Irx1!1.77!88.58!Irx1;;chr15:78994907..78994926,-!p1@Sox10!1.74!133.55!Sox10;;chr5:144951153..144951203,+!p1@Bhlha15!1.73!75.05!Bhlha15;;chr2:9800207..9800234,-!p1@Gata3!1.72!152.32!Gata3;;chr15:97738692..97738747,-!p1@Vdr!1.68!242.82!Vdr;;chr2:172375081..172375105,+!p1@Tfap2c!1.68!46.91!Tfap2c;;chr13:72766234..72766243,+!p3@Irx2!1.61!39.46!Irx2;;chr13:72101161..72101177,-!p2@Irx1!1.60!52.98!Irx1;;chr11:90250944..90250982,-!p2@Hlf!1.55!56.29!Hlf;;chr2:103143315..103143328,-!p2@Ehf!1.43!25.94!Ehf;;chr15:50714356..50714368,-!p14@Trps1!1.41!24.83!Trps1;;chr11:100720767..100720797,+!p4@Stat5a!1.39!23.45!Stat5a;;chr9:31720843..31720888,-!p1@Barx2!1.33!22.63!Barx2;;chr13:40826961..40827001,-!p4@Tfap2a!1.31!19.59!Tfap2a;;chr11:90252223..90252240,-!p1@Hlf!1.25!137.69!Hlf;;chr11:5420954..5420969,+!p2@Xbp1!1.23!193.43!Xbp1;;chr13:40829137..40829205,-!p1@Tfap2a!1.22!17.38!Tfap2a;;chr12:25257265..25257294,+!p2@Grhl1!1.22!15.45!Grhl1;;chr15:50721942..50721987,-!p13@Trps1!1.21!17.66!Trps1;;chr12:25257141..25257173,+!p1@Grhl1!1.19!29.80!Grhl1;;chr8:94881733..94881790,+!p1@Irx5!1.18!27.32!Irx5;;chr15:50721211..50721234,-!p6@Trps1!1.18!23.18!Trps1;;chr11:90250894..90250916,-!p5@Hlf!1.13!12.42!Hlf;;chr15:50721515..50721540,-!p3@Trps1!1.12!35.32!Trps1;;chr8:94325321..94325366,-!p1@Irx3!1.12!29.80!Irx3;;chr11:60023912..60023930,-!p1@Srebf1!1.11!289.46!Srebf1;;chr15:50721640..50721654,-!p7@Trps1!1.11!18.76!Trps1;;chr11:34108085..34108092,-!p1@Foxi1!1.11!11.87!Foxi1;;chr17:14011485..14011507,+!p2@Mllt4!1.09!11.31!Mllt4;;chr4:119406412..119406439,+!p2@Hivep3!1.08!21.80!Hivep3;;chr13:30841099..30841116,+!p1@Irf4!1.07!17.11!Irf4;;chr13:72101141..72101158,-!p3@Irx1!1.05!12.69!Irx1;;chr9:69137716..69137744,+!p1@Rora!1.04!63.47!Rora;;chr8:94325814..94325839,-!p2@Irx3!1.04!21.25!Irx3;;chr16:25801993..25802014,+!p1@Trp63!1.04!9.93!Trp63;;chr19:55816414..55816425,+!p4@Tcf7l2!1.01!48.84!Tcf7l2;;chr15:50721239..50721260,-!p9@Trps1!1.00!15.73!Trps1;;chr11:100720806..100720820,+!p6@Stat5a!0.99!8.83!Stat5a;;chr19:55816300..55816332,+!p1@Tcf7l2!0.97!401.49!Tcf7l2;;chr4:119406389..119406411,+!p1@Hivep3!0.97!41.94!Hivep3;;chr2:9809357..9809371,-!p2@Gata3!0.97!8.28!Gata3;;chr7:87170879..87170914,+!p2@Zfp710!0.95!19.04!Zfp710;;chr15:97741053..97741072,-!p2@Vdr!0.94!7.73!Vdr;;chr11:60034039..60034050,-!p4@Srebf1!0.94!7.73!Srebf1;;chr15:50720601..50720630,-!p2@Trps1!0.93!18.49!Trps1;;chr11:106128936..106128955,-!p4@Smarcd2!0.93!8.83!Smarcd2;;chr6:115372058..115372085,+!p3@Pparg!0.93!7.45!Pparg;;chr2:172375136..172375149,+!p2@Tfap2c!0.93!7.45!Tfap2c;;chr6:51382677..51382783,+!p1@Nfe2l3!0.91!19.04!Nfe2l3;;chr2:173044380..173044432,-!p1@Zbp1!0.91!17.38!Zbp1;;chr15:50721503..50721514,-!p15@Trps1!0.91!8.83!Trps1;;chr11:90249521..90249551,-!p3@Hlf!0.91!7.17!Hlf;;chr3:94176733..94176794,+!p1@Rorc!0.90!56.84!Rorc;;chr10:5734525..5734569,-!p3@Esr1!0.89!11.59!Esr1;;chr1:38721792..38721845,-!p1@Aff3!0.89!8.55!Aff3;;chr5:135582751..135582788,+!p1@Mlxipl!0.88!27.87!Mlxipl;;chr2:74529970..74529997,+!p1@Hoxd10!0.87!6.35!Hoxd10;;chr16:25802129..25802142,+!p3@Trp63!0.87!6.35!Trp63;;chr15:50721616..50721632,-!p4@Trps1!0.86!17.38!Trps1;;chr8:94325847..94325869,-!p3@Irx3!0.86!10.21!Irx3;;chr11:100721761..100721851,+!p1@Stat5a!0.85!46.91!Stat5a;;chr11:11586218..11586285,+!p1@Ikzf1!0.85!20.42!Ikzf1;;chr12:25257176..25257190,+!p3@Grhl1!0.85!6.90!Grhl1;;chr1:19199236..19199258,+!p1@Tfap2b!0.85!6.07!Tfap2b;;chr9:48644037..48644067,-!p2@Zbtb16!0.82!14.90!Zbtb16;;chr10:30375579..30375616,-!p3@Ncoa7!0.82!14.07!Ncoa7;;chr11:121380640..121380655,-!p1@Zfp750!0.82!9.66!Zfp750;;chr19:25746898..25746910,+!p1@Dmrt2!0.82!8.55!Dmrt2;;chr5:104121453..104121479,+!p4@Aff1!0.81!26.77!Aff1;;chr6:133986088..133986122,+!p4@Etv6!0.81!25.11!Etv6;;chr11:121380594..121380609,-!p2@Zfp750!0.81!9.93!Zfp750;;chr9:51021788..51021802,+!p1@Pou2af1!0.81!6.62!Pou2af1;;chr2:103264977..103264986,+!p6@Elf5!0.81!5.52!Elf5;;chr11:100721640..100721658,+!p2@Stat5a!0.80!5.24!Stat5a;;chr4:44723559..44723593,-!p1@Pax5!0.80!5.24!Pax5;;chr13:44825008..44825066,+!p5@Jarid2!0.79!10.76!Jarid2;;chr4:119486912..119486954,+!p3@Hivep3!0.79!9.38!Hivep3;;chr7:51787434..51787448,-!p1@Spib!0.79!7.73!Spib;;chr13:73397958..73397994,+!p1@Irx4!0.78!4.97!Irx4;;chr11:90250999..90251013,-!p8@Hlf!0.78!4.97!Hlf;;chr10:128082840..128082872,-!p1@Ikzf4!0.77!6.07!Ikzf4;;chr7:35904304..35904320,+!p1@Cebpa!0.76!106.79!Cebpa;;chr19:55816398..55816409,+!p5@Tcf7l2!0.76!24.56!Tcf7l2;;chr12:37835141..37835194,+!p1@Meox2!0.76!16.00!Meox2;;chr12:87811081..87811100,+!p2@Esrrb!0.76!4.69!Esrrb;;chr14:79915425..79915501,+!p1@Elf1!0.75!44.98!Elf1;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.75!14.35!Tfcp2l1;;chr9:69137672..69137702,+!p2@Rora!0.74!20.97!Rora;;chr19:55816770..55816793,+!p2@Tcf7l2!0.73!42.49!Tcf7l2;;chr6:90412582..90412601,+!p1@Klf15!0.73!22.63!Klf15;;chr6:145814003..145814056,-!p1@Bhlhe41!0.73!13.80!Bhlhe41;;chr15:97741033..97741048,-!p3@Vdr!0.73!4.41!Vdr;;chr8:94881686..94881700,+!p4@Irx5!0.73!4.41!Irx5;;chr4:148275237..148275311,+!p2@Casz1!0.72!19.59!Casz1;;chr18:39648811..39648818,-!p4@Nr3c1!0.72!8.00!Nr3c1;;chr11:98636531..98636559,-!p1@Nr1d1!0.71!26.49!Nr1d1;;chr10:5734677..5734702,-!p4@Esr1!0.71!4.14!Esr1;;chr6:115372099..115372121,+!p5@Pparg!0.71!4.14!Pparg;;chr2:9800094..9800108,-!p3@Gata3!0.71!4.14!Gata3;;chr15:102828658..102828678,+!p1@Hoxc6!0.71!4.14!Hoxc6;;chr13:37918486..37918575,+!p2@Rreb1!0.70!28.15!Rreb1;;chr4:149943593..149943605,+!p5@Rere!0.70!7.73!Rere;;chr8:94325486..94325510,-!p4@Irx3!0.70!5.52!Irx3;;chr2:74549968..74549996,+!p1@Hoxd3!0.70!5.24!Hoxd3;;chr2:9809402..9809422,-!p5@Gata3!0.69!3.86!Gata3;;chr19:55816546..55816556,+!p3@Tcf7l2!0.68!16.28!Tcf7l2;;chr3:89197057..89197114,-!p1@Zbtb7b!0.68!14.35!Zbtb7b;;chr7:20162663..20162678,+!p1@Zfp296!0.68!5.24!Zfp296;;chr8:94881872..94881887,+!p2@Irx5!0.68!4.14!Irx5;;chr4:82151653..82151706,-!p2@Nfib!0.67!120.03!Nfib;;chr15:50721588..50721610,-!p1@Trps1!0.67!43.05!Trps1;;chr11:121380611..121380625,-!p3@Zfp750!0.67!4.69!Zfp750;;chr6:133985839..133985915,+!p1@Etv6!0.66!69.81!Etv6;;chr13:31898637..31898653,+!p2@Foxc1!0.66!6.90!Foxc1;;chr7:148452314..148452329,-!p1@Irf7!0.65!28.15!Irf7;;chr1:52176406..52176433,+!p2@Stat1!0.65!9.66!Stat1;;chr8:87297280..87297326,-!p2@Nfix!0.65!9.11!Nfix;;chr9:48644013..48644027,-!p5@Zbtb16!0.65!4.41!Zbtb16;;chr11:52096066..52096081,-!p2@Tcf7!0.65!4.41!Tcf7;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.64!15.18!Ppp1r13l;;chr10:5636374..5636421,-!p1@Esr1!0.64!4.41!Esr1;;chr2:91864661..91864686,-!p1@Creb3l1!0.63!85.26!Creb3l1;;chr13:37918773..37918818,+!p3@Rreb1!0.63!16.00!Rreb1;;chr2:91077034..91077078,-!p2@Ddb2!0.63!8.00!Ddb2;;chr12:37835120..37835133,+!p2@Meox2!0.63!4.97!Meox2;;chr13:40825465..40825469,-!p2@Tfap2a!0.63!3.31!Tfap2a;;chr1:19199021..19199048,+!p8@Tfap2b!0.63!3.31!Tfap2b;;chr8:94325779..94325791,-!p7@Irx3!0.63!3.31!Irx3;;chr13:37949830..37949861,+!p7@Rreb1!0.62!6.62!Rreb1;;chr2:127347067..127347093,-!p1@Kcnip3!0.62!5.79!Kcnip3;;chr15:37162834..37162849,+!p2@Grhl2!0.62!3.86!Grhl2;;chr14:22808697..22808715,-!p4@Zfp503!0.62!3.86!Zfp503;;chr17:28369739..28369774,+!p2@Ppard!0.61!11.04!Ppard;;chr15:50721777..50721803,-!p11@Trps1!0.61!4.97!Trps1;;chr2:172376261..172376267,+!p4@Tfap2c!0.61!3.04!Tfap2c;;chr1:36364590..36364608,+!p1@Arid5a!0.60!36.15!Arid5a;;chr11:60034052..60034134,-!p2@Srebf1!0.59!84.16!Srebf1;;chr4:97444012..97444045,+!p4@Nfia!0.59!26.49!Nfia;;chr6:145813905..145813932,-!p2@Bhlhe41!0.59!6.07!Bhlhe41;;chr16:92697560..92697592,-!p2@Runx1!0.58!21.25!Runx1;;chr1:165243792..165243808,-!p1@Prrx1!0.58!11.59!Prrx1;;chr2:91035197..91035237,-!p1@Nr1h3!0.58!6.62!Nr1h3;;chr15:37162796..37162828,+!p1@Grhl2!0.58!5.24!Grhl2;;chr9:69137648..69137656,+!p5@Rora!0.58!4.14!Rora;;chr11:90251852..90251855,-!p4@Hlf!0.58!3.59!Hlf;;chr13:40824310..40824314,-!p6@Tfap2a!0.58!2.76!Tfap2a;;chr6:52190467..52190500,-!p1@Hoxa10!0.58!2.76!Hoxa10;;chr2:9809374..9809396,-!p4@Gata3!0.58!2.76!Gata3;;chr6:133985657..133985707,+!p3@Etv6!0.57!18.49!Etv6;;chr15:50720589..50720600,-!p12@Trps1!0.57!3.86!Trps1;;chr1:135557526..135557551,-!p1@Zbed6!0.56!4.69!Zbed6;;chr14:67853632..67853674,+!p3@Ebf2!0.56!3.31!Ebf2;;chr8:87643578..87643593,-!p1@Zfp791!0.55!6.07!Zfp791;;chr3:99057269..99057306,+!p1@Tbx15!0.55!3.31!Tbx15;;chr19:5560600..5560617,-!p1@Ovol1!0.55!3.31!Ovol1;;chr15:61817095..61817111,+!p1@Myc!0.54!189.84!Myc;;chr11:112643496..112643562,+!p1@Sox9!0.54!117.82!Sox9;;chr13:31898729..31898761,+!p1@Foxc1!0.54!7.17!Foxc1;;chr12:113917014..113917034,+!p1@Zbtb42!0.54!4.97!Zbtb42;;chr2:173044357..173044377,-!p2@Zbp1!0.54!3.86!Zbp1;;chr12:25257298..25257323,+!p5@Grhl1!0.54!2.48!Grhl1;;chr5:144951136..144951139,+!p2@Bhlha15!0.54!2.48!Bhlha15;;chr10:5636354..5636373,-!p2@Esr1!0.54!2.48!Esr1;;chr11:98407264..98407295,-!p1@Ikzf3!0.54!2.48!Ikzf3;;chr4:44723520..44723544,-!p2@Pax5!0.54!2.48!Pax5;;chr2:74550015..74550057,+!p2@Hoxd3!0.54!2.48!Hoxd3;;chr2:9809451..9809469,-!p6@Gata3!0.54!2.48!Gata3;;chr9:31720903..31720918,-!p2@Barx2!0.54!2.48!Barx2;;chr9:31721051..31721068,-!p3@Barx2!0.54!2.48!Barx2;;chr11:5420973..5420992,+!p1@Xbp1!0.53!329.47!Xbp1;;chr15:61816932..61816952,+!p2@Myc!0.53!25.11!Myc;;chr1:194979315..194979359,+!p1@Irf6!0.53!18.49!Irf6;;chr1:137155026..137155042,-!p1@Elf3!0.53!17.66!Elf3;;chr15:50721544..50721558,-!p5@Trps1!0.53!6.35!Trps1;;chr3:130815703..130815721,+!p2@Lef1!0.53!3.04!Lef1;;chr14:67853425..67853454,+!p1@Ebf2!0.52!3.59!Ebf2;;chr15:102087880..102087927,-!p2@Rarg!0.51!6.07!Rarg;;chr15:102797225..102797243,+!p2@Hoxc10!0.51!2.21!Hoxc10;;chr1:19202352..19202354,+!p2@Tfap2b!0.51!2.21!Tfap2b;;chr11:90252108..90252134,-!p6@Hlf!0.51!2.21!Hlf;;c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| ||
Line 41: | Line 44: | ||
|is_a=EFO:0002091;;FF:0011387 | |is_a=EFO:0002091;;FF:0011387 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10476 | |||
|library_id_phase_based=2:CNhs10476 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;588 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;588 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/mammary%2520gland%252c%2520adult%2520pregnant%2520day19.CNhs10476.588-5H2.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/mammary%2520gland%252c%2520adult%2520pregnant%2520day19.CNhs10476.588-5H2.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/mammary%2520gland%252c%2520adult%2520pregnant%2520day19.CNhs10476.588-5H2.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/mammary%2520gland%252c%2520adult%2520pregnant%2520day19.CNhs10476.588-5H2.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/mammary%2520gland%252c%2520adult%2520pregnant%2520day19.CNhs10476.588-5H2.mm9.nobarcode.rdna.fa.gz | |||
|name=mammary gland, adult pregnant day19 | |name=mammary gland, adult pregnant day19 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10476,LSID646,release008,COMPLETED | |profile_hcage=CNhs10476,LSID646,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.0131699565603144,0,0,0.10582914506561,0,0.0116855639255533,0.26026749722399,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.191893350882575,0,0,1.34185363349263,0,0.0653913239449651,0.10582914506561,0,0,0,0,0,0,0,0.368448931659803,0,0,0,0.10582914506561,0,0.0027602789481565,-0.0745904302122189,-0.284690591088155,-0.66121785986054,-0.164039492944741,0,0,0,0,0,0,0,0,0,0,0,0,0.0398235975021694,0,0,0,0,0.0491516144577797,0,0,0,0.10582914506561,0,-0.0714768677964858,0.0123428492779006,0.0327652722819126,0.0737236425741554,0.322993506617287,0,-0.0654014559771541,0.0713128485871162,0,0,0,-0.0489539266248035,0.06563068378349,-0.0788315948399074,0,0,0,0,0,0,-0.08736835937431,-0.296182012108503,-0.174374844704901,0,0,0,0,0 | |||
|rna_box=5 | |rna_box=5 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 61: | Line 76: | ||
|rna_weight_ug= | |rna_weight_ug= | ||
|sample_age= | |sample_age= | ||
|sample_category=developmental | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 97: | ||
|top_motifs=STAT5{A,B}:3.57008235751;FOXQ1:2.04710389834;STAT2,4,6:1.89194433802;CDX1,2,4:1.67203500851;SPIB:1.43501117722;CDC5L:1.40978619076;SOX5:1.33259311927;NFIL3:1.33067064982;FOXO1,3,4:1.23005163744;SNAI1..3:1.10943052688;IRF1,2:1.08969599654;SPZ1:1.07882051373;CRX:1.07567587067;ATF6:1.06132901219;NKX2-2,8:1.04437663236;TP53:1.00544765691;FOXN1:0.972109205989;PAX1,9:0.923250010562;TEF:0.909358328521;HIF1A:0.849762819789;IRF7:0.841162253132;ALX4:0.821662513093;GTF2A1,2:0.79508718068;GCM1,2:0.746195159598;GZF1:0.745572649515;NFATC1..3:0.740296878038;ETS1,2:0.737703194923;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.720139112495;ESR1:0.687844805113;NR6A1:0.68652546175;SP1:0.662971397045;ZBTB16:0.657282934368;POU2F1..3:0.646671490913;bHLH_family:0.640779122035;AR:0.621069286952;MAFB:0.620896173677;HMX1:0.595803432621;HES1:0.551108638349;ZEB1:0.532055950821;SMAD1..7,9:0.486174854194;CEBPA,B_DDIT3:0.484988966709;NKX3-1:0.454974653519;SPI1:0.435794529915;ELF1,2,4:0.433649942689;TEAD1:0.42777751949;HLF:0.406682474005;DMAP1_NCOR{1,2}_SMARC:0.332390870512;SRF:0.326650729109;HAND1,2:0.321245051442;TFCP2:0.26603448852;RXRA_VDR{dimer}:0.256925511083;PRDM1:0.248731157154;NFKB1_REL_RELA:0.239622388614;XCPE1{core}:0.233977255859;DBP:0.189341913169;TLX1..3_NFIC{dimer}:0.151864165428;FOSL2:0.145709658388;AIRE:0.143901121938;HMGA1,2:0.126216084706;STAT1,3:0.126093063366;IKZF2:0.118259008481;T:0.0988084461088;TOPORS:0.0948420548764;NFE2L2:0.0915713115251;KLF4:0.0784520466269;POU1F1:0.077972787237;FOS_FOS{B,L1}_JUN{B,D}:0.0632484980819;RUNX1..3:0.056907168846;TFAP4:0.0363966677049;NR3C1:0.0278954863749;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.017530949114;GLI1..3:0.0152174467073;FOX{D1,D2}:0.0130649012677;RORA:0.00961618778358;HOX{A5,B5}:0.00175150336309;MYOD1:0.00120252006796;EP300:-0.00622119192231;MYBL2:-0.00650521204619;PDX1:-0.0140005031745;YY1:-0.0185019384896;ZNF238:-0.0442684448557;LEF1_TCF7_TCF7L1,2:-0.0526439608737;FOXL1:-0.0663307968061;GFI1B:-0.0667093640432;ATF2:-0.0730674919072;NKX3-2:-0.0733314118642;ESRRA:-0.0754634470754;FOXP1:-0.0800330418016;ARID5B:-0.0840167053429;FOX{F1,F2,J1}:-0.0945937683642;MTF1:-0.102299807054;MYFfamily:-0.1100143476;SOX{8,9,10}:-0.110526331817;TFAP2{A,C}:-0.120665628285;PAX2:-0.128740483504;ATF4:-0.140472467474;CREB1:-0.146179477911;POU5F1:-0.165760682944;ELK1,4_GABP{A,B1}:-0.190120913258;SREBF1,2:-0.204982764295;HIC1:-0.223104510119;MZF1:-0.22458874592;MAZ:-0.225526662738;NFE2:-0.227150728105;IKZF1:-0.230833063434;NFIX:-0.250475454145;PITX1..3:-0.269872188506;FOXP3:-0.272805481452;PAX5:-0.283873516306;RBPJ:-0.302988819834;FOXA2:-0.313589445702;VSX1,2:-0.321438425732;ZNF143:-0.325855739822;TGIF1:-0.330736496407;SOX2:-0.333048964646;GATA4:-0.351234450077;CUX2:-0.352417714007;NANOG{mouse}:-0.353803097927;TAL1_TCF{3,4,12}:-0.354113993571;NFE2L1:-0.364531547146;MEF2{A,B,C,D}:-0.369052086338;REST:-0.372152732165;HNF4A_NR2F1,2:-0.387041039156;ATF5_CREB3:-0.392245249938;AHR_ARNT_ARNT2:-0.401842598867;GTF2I:-0.402457631838;TFAP2B:-0.40937030054;MED-1{core}:-0.414825784582;BACH2:-0.452246270608;MYB:-0.463742166575;HOXA9_MEIS1:-0.482861724229;TBP:-0.484721000526;E2F1..5:-0.486730005412;FOX{I1,J2}:-0.4934268841;BREu{core}:-0.506157862971;NR5A1,2:-0.509958504238;NHLH1,2:-0.520956343575;PAX4:-0.531632006197;PRRX1,2:-0.533991654732;TLX2:-0.540582374993;TBX4,5:-0.543610915336;NKX2-3_NKX2-5:-0.622568373407;ZNF148:-0.623865529092;HNF1A:-0.65606156431;EGR1..3:-0.666966956223;POU3F1..4:-0.676838208175;MTE{core}:-0.680888972358;GFI1:-0.693981520283;BPTF:-0.707894542315;RXR{A,B,G}:-0.709833709243;LMO2:-0.711373023677;PATZ1:-0.718459798996;NKX6-1,2:-0.760492745845;ZNF384:-0.76169470227;ZBTB6:-0.762237990994;NFY{A,B,C}:-0.766543914137;ZFP161:-0.800247494287;POU6F1:-0.81285250285;SOX17:-0.815410343294;NANOG:-0.820968462624;UFEwm:-0.830550323564;HOX{A4,D4}:-0.837682744299;PAX6:-0.845074488389;RFX1:-0.882587540757;PPARG:-0.883925999545;FOXM1:-0.889050477871;OCT4_SOX2{dimer}:-0.889320822761;NRF1:-0.903341442695;RREB1:-0.91125527174;FOXD3:-0.92229224156;EBF1:-0.92251167268;ADNP_IRX_SIX_ZHX:-0.927040083438;LHX3,4:-0.957262345261;JUN:-0.961103903041;GATA6:-1.00788913126;HBP1_HMGB_SSRP1_UBTF:-1.03217208979;ZIC1..3:-1.03627905051;NKX2-1,4:-1.03841465302;TFDP1:-1.04399896182;RFX2..5_RFXANK_RFXAP:-1.05843539008;ONECUT1,2:-1.22992445434;ZNF423:-1.27912366656;EVI1:-1.42464115621;HSF1,2:-1.51563614445;NR1H4:-1.73556447755;PAX8:-1.79243390958;ALX1:-1.80002986967;PBX1:-1.99088172767;EN1,2:-2.17391733792 | |top_motifs=STAT5{A,B}:3.57008235751;FOXQ1:2.04710389834;STAT2,4,6:1.89194433802;CDX1,2,4:1.67203500851;SPIB:1.43501117722;CDC5L:1.40978619076;SOX5:1.33259311927;NFIL3:1.33067064982;FOXO1,3,4:1.23005163744;SNAI1..3:1.10943052688;IRF1,2:1.08969599654;SPZ1:1.07882051373;CRX:1.07567587067;ATF6:1.06132901219;NKX2-2,8:1.04437663236;TP53:1.00544765691;FOXN1:0.972109205989;PAX1,9:0.923250010562;TEF:0.909358328521;HIF1A:0.849762819789;IRF7:0.841162253132;ALX4:0.821662513093;GTF2A1,2:0.79508718068;GCM1,2:0.746195159598;GZF1:0.745572649515;NFATC1..3:0.740296878038;ETS1,2:0.737703194923;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.720139112495;ESR1:0.687844805113;NR6A1:0.68652546175;SP1:0.662971397045;ZBTB16:0.657282934368;POU2F1..3:0.646671490913;bHLH_family:0.640779122035;AR:0.621069286952;MAFB:0.620896173677;HMX1:0.595803432621;HES1:0.551108638349;ZEB1:0.532055950821;SMAD1..7,9:0.486174854194;CEBPA,B_DDIT3:0.484988966709;NKX3-1:0.454974653519;SPI1:0.435794529915;ELF1,2,4:0.433649942689;TEAD1:0.42777751949;HLF:0.406682474005;DMAP1_NCOR{1,2}_SMARC:0.332390870512;SRF:0.326650729109;HAND1,2:0.321245051442;TFCP2:0.26603448852;RXRA_VDR{dimer}:0.256925511083;PRDM1:0.248731157154;NFKB1_REL_RELA:0.239622388614;XCPE1{core}:0.233977255859;DBP:0.189341913169;TLX1..3_NFIC{dimer}:0.151864165428;FOSL2:0.145709658388;AIRE:0.143901121938;HMGA1,2:0.126216084706;STAT1,3:0.126093063366;IKZF2:0.118259008481;T:0.0988084461088;TOPORS:0.0948420548764;NFE2L2:0.0915713115251;KLF4:0.0784520466269;POU1F1:0.077972787237;FOS_FOS{B,L1}_JUN{B,D}:0.0632484980819;RUNX1..3:0.056907168846;TFAP4:0.0363966677049;NR3C1:0.0278954863749;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.017530949114;GLI1..3:0.0152174467073;FOX{D1,D2}:0.0130649012677;RORA:0.00961618778358;HOX{A5,B5}:0.00175150336309;MYOD1:0.00120252006796;EP300:-0.00622119192231;MYBL2:-0.00650521204619;PDX1:-0.0140005031745;YY1:-0.0185019384896;ZNF238:-0.0442684448557;LEF1_TCF7_TCF7L1,2:-0.0526439608737;FOXL1:-0.0663307968061;GFI1B:-0.0667093640432;ATF2:-0.0730674919072;NKX3-2:-0.0733314118642;ESRRA:-0.0754634470754;FOXP1:-0.0800330418016;ARID5B:-0.0840167053429;FOX{F1,F2,J1}:-0.0945937683642;MTF1:-0.102299807054;MYFfamily:-0.1100143476;SOX{8,9,10}:-0.110526331817;TFAP2{A,C}:-0.120665628285;PAX2:-0.128740483504;ATF4:-0.140472467474;CREB1:-0.146179477911;POU5F1:-0.165760682944;ELK1,4_GABP{A,B1}:-0.190120913258;SREBF1,2:-0.204982764295;HIC1:-0.223104510119;MZF1:-0.22458874592;MAZ:-0.225526662738;NFE2:-0.227150728105;IKZF1:-0.230833063434;NFIX:-0.250475454145;PITX1..3:-0.269872188506;FOXP3:-0.272805481452;PAX5:-0.283873516306;RBPJ:-0.302988819834;FOXA2:-0.313589445702;VSX1,2:-0.321438425732;ZNF143:-0.325855739822;TGIF1:-0.330736496407;SOX2:-0.333048964646;GATA4:-0.351234450077;CUX2:-0.352417714007;NANOG{mouse}:-0.353803097927;TAL1_TCF{3,4,12}:-0.354113993571;NFE2L1:-0.364531547146;MEF2{A,B,C,D}:-0.369052086338;REST:-0.372152732165;HNF4A_NR2F1,2:-0.387041039156;ATF5_CREB3:-0.392245249938;AHR_ARNT_ARNT2:-0.401842598867;GTF2I:-0.402457631838;TFAP2B:-0.40937030054;MED-1{core}:-0.414825784582;BACH2:-0.452246270608;MYB:-0.463742166575;HOXA9_MEIS1:-0.482861724229;TBP:-0.484721000526;E2F1..5:-0.486730005412;FOX{I1,J2}:-0.4934268841;BREu{core}:-0.506157862971;NR5A1,2:-0.509958504238;NHLH1,2:-0.520956343575;PAX4:-0.531632006197;PRRX1,2:-0.533991654732;TLX2:-0.540582374993;TBX4,5:-0.543610915336;NKX2-3_NKX2-5:-0.622568373407;ZNF148:-0.623865529092;HNF1A:-0.65606156431;EGR1..3:-0.666966956223;POU3F1..4:-0.676838208175;MTE{core}:-0.680888972358;GFI1:-0.693981520283;BPTF:-0.707894542315;RXR{A,B,G}:-0.709833709243;LMO2:-0.711373023677;PATZ1:-0.718459798996;NKX6-1,2:-0.760492745845;ZNF384:-0.76169470227;ZBTB6:-0.762237990994;NFY{A,B,C}:-0.766543914137;ZFP161:-0.800247494287;POU6F1:-0.81285250285;SOX17:-0.815410343294;NANOG:-0.820968462624;UFEwm:-0.830550323564;HOX{A4,D4}:-0.837682744299;PAX6:-0.845074488389;RFX1:-0.882587540757;PPARG:-0.883925999545;FOXM1:-0.889050477871;OCT4_SOX2{dimer}:-0.889320822761;NRF1:-0.903341442695;RREB1:-0.91125527174;FOXD3:-0.92229224156;EBF1:-0.92251167268;ADNP_IRX_SIX_ZHX:-0.927040083438;LHX3,4:-0.957262345261;JUN:-0.961103903041;GATA6:-1.00788913126;HBP1_HMGB_SSRP1_UBTF:-1.03217208979;ZIC1..3:-1.03627905051;NKX2-1,4:-1.03841465302;TFDP1:-1.04399896182;RFX2..5_RFXANK_RFXAP:-1.05843539008;ONECUT1,2:-1.22992445434;ZNF423:-1.27912366656;EVI1:-1.42464115621;HSF1,2:-1.51563614445;NR1H4:-1.73556447755;PAX8:-1.79243390958;ALX1:-1.80002986967;PBX1:-1.99088172767;EN1,2:-2.17391733792 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:588-5H2;search_select_hide=table117:588-5H2 | |||
}} | }} |
Latest revision as of 19:18, 4 June 2020
Name: | mammary gland, adult pregnant day19 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs10476 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10476
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0.0687 |
1001 | 0.0331 |
1002 | -0.0941 |
1003 | 0.166 |
1004 | 0 |
1005 | 0.106 |
1006 | 0 |
1007 | -0.031 |
1008 | 0 |
1009 | 0.121 |
101 | 0.0476 |
1010 | 0 |
1011 | 0 |
1012 | 0 |
1013 | 0.25 |
1014 | -0.0874 |
1015 | -0.121 |
1016 | -0.0888 |
1017 | 0 |
1018 | 0.106 |
1019 | 0.898 |
102 | 0 |
1020 | 0 |
1021 | 0.106 |
1022 | 0.326 |
1023 | 0 |
1024 | 0.122 |
1025 | -0.0549 |
1026 | 0 |
1027 | -0.048 |
1028 | 0 |
1029 | -0.0418 |
103 | 0.0507 |
1030 | 0 |
1031 | -0.154 |
1032 | -0.119 |
1033 | 0 |
1034 | 0 |
1035 | 0 |
1036 | 0.0507 |
1037 | 0 |
1038 | -0.075 |
1039 | 0.121 |
104 | 0 |
1040 | 0.0463 |
1041 | 1.028 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10476
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10476
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.259 |
10 | 10 | 0.284 |
100 | 100 | 0.731 |
101 | 101 | 0.782 |
102 | 102 | 0.635 |
103 | 103 | 0.173 |
104 | 104 | 0.413 |
105 | 105 | 0.318 |
106 | 106 | 0.00183 |
107 | 107 | 0.119 |
108 | 108 | 0.495 |
109 | 109 | 0.0297 |
11 | 11 | 0.0956 |
110 | 110 | 0.149 |
111 | 111 | 0.0619 |
112 | 112 | 0.288 |
113 | 113 | 0.815 |
114 | 114 | 0.2 |
115 | 115 | 0.286 |
116 | 116 | 0.311 |
117 | 117 | 0.3 |
118 | 118 | 0.811 |
119 | 119 | 0.139 |
12 | 12 | 0.513 |
120 | 120 | 0.814 |
121 | 121 | 0.908 |
122 | 122 | 0.101 |
123 | 123 | 0.629 |
124 | 124 | 0.529 |
125 | 125 | 0.047 |
126 | 126 | 0.715 |
127 | 127 | 0.221 |
128 | 128 | 0.00364 |
129 | 129 | 0.067 |
13 | 13 | 4.88599e-6 |
130 | 130 | 0.321 |
131 | 131 | 0.138 |
132 | 132 | 0.632 |
133 | 133 | 0.227 |
134 | 134 | 0.602 |
135 | 135 | 0.106 |
136 | 136 | 0.178 |
137 | 137 | 0.0132 |
138 | 138 | 0.341 |
139 | 139 | 0.148 |
14 | 14 | 0.402 |
140 | 140 | 0.864 |
141 | 141 | 0.371 |
142 | 142 | 0.643 |
143 | 143 | 0.388 |
144 | 144 | 0.0778 |
145 | 145 | 0.0392 |
146 | 146 | 0.47 |
147 | 147 | 0.166 |
148 | 148 | 0.705 |
149 | 149 | 0.201 |
15 | 15 | 0.224 |
150 | 150 | 0.155 |
151 | 151 | 0.074 |
152 | 152 | 0.0202 |
153 | 153 | 0.425 |
154 | 154 | 0.817 |
155 | 155 | 0.382 |
156 | 156 | 0.691 |
157 | 157 | 0.305 |
158 | 158 | 0.564 |
159 | 159 | 0.778 |
160 | 160 | 0.255 |
161 | 161 | 0.14 |
162 | 162 | 0.293 |
163 | 163 | 0.99 |
164 | 164 | 0.0109 |
165 | 165 | 0.339 |
166 | 166 | 0.765 |
167 | 167 | 0.103 |
168 | 168 | 0.788 |
169 | 169 | 0.0025 |
17 | 17 | 0.0412 |
18 | 18 | 0.699 |
19 | 19 | 0.103 |
2 | 2 | 0.299 |
20 | 20 | 0.348 |
21 | 21 | 0.642 |
22 | 22 | 0.0977 |
23 | 23 | 0.483 |
24 | 24 | 9.01137e-4 |
25 | 25 | 0.963 |
26 | 26 | 0.0127 |
27 | 27 | 0.498 |
28 | 28 | 0.418 |
29 | 29 | 0.403 |
3 | 3 | 0.244 |
30 | 30 | 0.775 |
31 | 31 | 0.965 |
32 | 32 | 0.818 |
33 | 33 | 0.614 |
34 | 34 | 0.795 |
35 | 35 | 0.233 |
36 | 36 | 0.724 |
37 | 37 | 0.0363 |
38 | 38 | 0.146 |
39 | 39 | 0.194 |
4 | 4 | 0.548 |
40 | 40 | 0.446 |
41 | 41 | 0.936 |
42 | 42 | 0.194 |
43 | 43 | 0.0783 |
44 | 44 | 0.476 |
45 | 45 | 0.65 |
46 | 46 | 0.105 |
47 | 47 | 0.291 |
48 | 48 | 0.0984 |
49 | 49 | 0.349 |
5 | 5 | 0.168 |
50 | 50 | 0.426 |
51 | 51 | 0.864 |
52 | 52 | 0.0641 |
53 | 53 | 0.601 |
54 | 54 | 0.853 |
55 | 55 | 0.679 |
56 | 56 | 0.403 |
57 | 57 | 0.958 |
58 | 58 | 0.4 |
59 | 59 | 0.405 |
6 | 6 | 0.184 |
60 | 60 | 0.0253 |
61 | 61 | 0.129 |
62 | 62 | 0.326 |
63 | 63 | 0.0187 |
64 | 64 | 0.802 |
65 | 65 | 0.219 |
66 | 66 | 0.776 |
67 | 67 | 0.966 |
68 | 68 | 0.0999 |
69 | 69 | 0.459 |
7 | 7 | 0.0594 |
70 | 70 | 0.00139 |
71 | 71 | 0.128 |
72 | 72 | 0.373 |
73 | 73 | 0.0169 |
74 | 74 | 0.712 |
75 | 75 | 0.312 |
76 | 76 | 0.707 |
77 | 77 | 0.554 |
78 | 78 | 0.00541 |
79 | 79 | 0.838 |
8 | 8 | 0.67 |
80 | 80 | 0.792 |
81 | 81 | 0.591 |
82 | 82 | 0.332 |
83 | 83 | 0.806 |
84 | 84 | 0.906 |
85 | 85 | 0.115 |
86 | 86 | 0.189 |
87 | 87 | 0.0632 |
88 | 88 | 0.364 |
89 | 89 | 0.514 |
9 | 9 | 0.451 |
90 | 90 | 0.639 |
91 | 91 | 0.829 |
92 | 92 | 0.21 |
93 | 93 | 0.693 |
94 | 94 | 0.945 |
95 | 95 | 0.371 |
96 | 96 | 0.484 |
97 | 97 | 0.768 |
98 | 98 | 0.242 |
99 | 99 | 0.324 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10476
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011387 mouse mammary gland- adult pregnant day19 sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001911 (mammary gland)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002365 (exocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0002330 (exocrine system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0000317 (mouse pregnant tissue sample)
0000323 (mouse pregnant day 18)
0011387 (mouse mammary gland- adult pregnant day19 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0008425 (mammary ridge)
UBERON:0010316 (germ layer / neural crest)