FFCP PHASE1:Hg19::chr17:38609342..38609354,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:38609342..38609354,+ | |||
|coexpression_cluster_id=C353 | |coexpression_cluster_id=C353 | ||
|description=CAGE_peak_at_chr17:38609342..38609354,+ | |description=CAGE_peak_at_chr17:38609342..38609354,+ | ||
|id=chr17:38609342..38609354,+ | |id=chr17:38609342..38609354,+ | ||
|ontology_enrichment_celltype=CL:0000135;8.76e-10;3!CL:0002564;8.76e-10;3!CL:0000388;8.76e-10;3!CL:0000153;3.27e-08;9!CL:0000447;3.27e-08;9!CL:0002602;3.30e-07;2!CL:0000499;6.01e-07;28 | |ontology_enrichment_celltype=CL:0000055!4.05e-18!180;CL:0000222!2.15e-12!119;CL:0000680!8.65e-12!57;CL:0000056!8.65e-12!57;CL:0000355!8.65e-12!57;CL:0000057!1.18e-11!75;CL:0000183!6.80e-11!59;CL:0000187!2.63e-10!54;CL:0000393!1.11e-08!60;CL:0000211!1.11e-08!60;CL:0002334!2.81e-08!12 | ||
| | |ontology_enrichment_celltype_v019=CL:0000135;8.76e-10;3!CL:0002564;8.76e-10;3!CL:0000388;8.76e-10;3!CL:0000153;3.27e-08;9!CL:0000447;3.27e-08;9!CL:0002602;3.30e-07;2!CL:0000499;6.01e-07;28 | ||
|ontology_enrichment_disease=DOID:0060084;4.94e-09;3!DOID:127;4.94e-09;3!DOID:0060072;7.25e-07;4 | |ontology_enrichment_celltype_v019_2=CL:0002564,9.26e-10,3;CL:0000135,9.53e-10,3;CL:0000388,9.53e-10,3;CL:0000153,3.33e-08,9;CL:0000447,3.33e-08,9;CL:0002602,3.33e-07,2;CL:0000499,6.01e-07,28 | ||
|ontology_enrichment_uberon=UBERON:0004905;4.63e-18;8!UBERON:0000982;4.63e-18;8!UBERON:0004770;4.63e-18;8!UBERON:0011135;2.64e-15;5!UBERON:0002216;2.64e-15;5!UBERON:0011134;2.64e-15;5!UBERON:0002209;2.64e-15;5!UBERON:0002213;2.64e-15;5!UBERON:0007844;2.64e-15;5!UBERON:0011138;2.64e-15;5!UBERON:0001130;2.64e-15;5!UBERON:0001066;2.64e-15;5!UBERON:0001468;2.64e-15;5!UBERON:0000075;1.51e-10;16!UBERON:0007846;8.76e-10;3!UBERON:0000043;8.76e-10;3!UBERON:0007845;8.76e-10;3!UBERON:0002242;8.76e-10;3!UBERON:0001434;5.08e-08;36!UBERON:0004765;8.60e-08;26!UBERON:0004457;1.03e-07;9!UBERON:0000042;1.03e-07;9!UBERON:0006444;3.30e-07;2!UBERON:0001995;3.30e-07;2!UBERON:0004715;3.30e-07;2 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;4.94e-09;3!DOID:127;4.94e-09;3!DOID:0060072;7.25e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,4.46e-09,3;DOID:127,4.46e-09,3;DOID:0060072,6.73e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0005256!2.42e-15!143;UBERON:0002100!2.19e-12!216;UBERON:0000914!2.54e-12!83;UBERON:0002329!2.54e-12!83;UBERON:0003077!2.54e-12!83;UBERON:0003059!2.54e-12!83;UBERON:0007282!2.54e-12!83;UBERON:0009618!2.54e-12!83;UBERON:0007285!2.54e-12!83;UBERON:0001134!5.25e-12!61;UBERON:0002036!5.25e-12!61;UBERON:0003082!5.25e-12!61;UBERON:0000490!1.74e-11!138;UBERON:0002385!3.42e-11!63;UBERON:0001015!3.42e-11!63;UBERON:0000383!3.42e-11!63;UBERON:0004290!5.21e-11!70;UBERON:0004872!8.96e-10!84;UBERON:0000486!1.55e-09!82;UBERON:0003914!3.66e-09!118;UBERON:0002049!1.22e-08!79;UBERON:0007798!1.22e-08!79;UBERON:0004535!4.55e-08!110;UBERON:0001009!7.24e-08!113;UBERON:0003104!4.82e-07!238;UBERON:0009142!4.82e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;4.63e-18;8!UBERON:0000982;4.63e-18;8!UBERON:0004770;4.63e-18;8!UBERON:0011135;2.64e-15;5!UBERON:0002216;2.64e-15;5!UBERON:0011134;2.64e-15;5!UBERON:0002209;2.64e-15;5!UBERON:0002213;2.64e-15;5!UBERON:0007844;2.64e-15;5!UBERON:0011138;2.64e-15;5!UBERON:0001130;2.64e-15;5!UBERON:0001066;2.64e-15;5!UBERON:0001468;2.64e-15;5!UBERON:0000075;1.51e-10;16!UBERON:0007846;8.76e-10;3!UBERON:0000043;8.76e-10;3!UBERON:0007845;8.76e-10;3!UBERON:0002242;8.76e-10;3!UBERON:0001434;5.08e-08;36!UBERON:0004765;8.60e-08;26!UBERON:0004457;1.03e-07;9!UBERON:0000042;1.03e-07;9!UBERON:0006444;3.30e-07;2!UBERON:0001995;3.30e-07;2!UBERON:0004715;3.30e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,4.44e-18,8;UBERON:0000982,4.44e-18,8;UBERON:0004770,4.44e-18,8;UBERON:0011135,2.81e-15,5;UBERON:0002216,2.81e-15,5;UBERON:0011134,2.81e-15,5;UBERON:0002209,2.81e-15,5;UBERON:0002213,2.81e-15,5;UBERON:0005856,2.81e-15,5;UBERON:0005866,2.81e-15,5;UBERON:0005863,2.81e-15,5;UBERON:0007844,2.81e-15,5;UBERON:0011138,2.81e-15,5;UBERON:0001130,2.81e-15,5;UBERON:0001066,2.81e-15,5;UBERON:0001468,2.81e-15,5;UBERON:0000075,1.56e-10,16;UBERON:0002242,9.26e-10,3;UBERON:0003068,9.26e-10,3;UBERON:0002328,9.26e-10,3;UBERON:0004880,9.26e-10,3;UBERON:0007846,9.53e-10,3;UBERON:0000043,9.53e-10,3;UBERON:0007845,9.53e-10,3;UBERON:0006444,3.33e-07,2;UBERON:0001995,3.33e-07,2;UBERON:0004715,3.33e-07,2;UBERON:0005406,5.04e-07,2;UBERON:0011137,6.93e-07,14 | |||
|phase1_expression=0.54503513781167,1.49870366723688,1.83240725324762,1.0007329835313,0,1.74467704820074,0,0.631719873426831,0.783556884599516,0,0,0,0,2.22779435328084,3.97676850873499,0,0,0,0.487932798790507,0,1.02000345622126,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.255725123687061,0.361439152384566,2.00535164254356,4.34539556882471,0,1.45990461090791,0.0945348171640679,0.443458794925128,0.087834785693126,0.130979075497713,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0.419499436209906,0.275118041940067,0.626984899610432,0,0,0.33472061276467,0,0.760272105718513,0.732186172644509,0,0,0,0,0.225222960966644,0,0,0.183201743930407,0,0,0,0.993943903390637,0,0.132409180813219,0.573673241497627,0.709336764396714,1.12135520028461,0,0.74000264525148,0.311211035399766,0,0.326923806226917,0.756787138224657,1.15235184896,0,0,0,0.149448680551801,0,0,0,0.408308342509787,0.245668634623536,2.6864703105699,0,2.22540236350701,0,0,0,0.125118519871964,0,0.438977620880838,1.22595118319608,1.65261864797256,0.113432183160021,0.179389635688862,0.427114777637135,0.423863802319124,0.900273288253207,0.412210116953756,0,0.744467425326359,0,0,0.252433774244115,0.828449087780694,1.13152239773168,0,0.10075209822764,0.339121184620975,0,0,0.286804595389004,0.121973706129595,0.132529768321485,0,0,0,0,1.56449532329816,1.28648187638577,0,2.3218396401599,0,0,0,0,0,0,0,0,0,0,1.4763109092493,1.40241773803446,0,1.47008711385542,1.26755034821831,2.94848165003288,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0.117408694235822,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.763976851116555,0,1.71072446022705,0,0,0,0.224262168690721,0,0.7333828582095,0,0,0,0.26593811658487,3.12022310734098,0.514414748524284,4.25547396069835,1.8649552531127,0.428933980974443,0.542621605391443,1.64648067356154,0,1.42156779497018,0,1.20575750823834,0,2.19940580600526,0,0,0,0.239624855491583,0,1.42636905040718,0.434343920002738,1.64381058040307,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,3.31267027641678,5.50187573165645,1.35632511849868,0.623912584592421,2.3195768543631,1.41932173530541,0.937131319941706,0.300946099727719,2.27407504055985,0,0,1.29058417979192,0.260650843404249,1.56640925970192,0,0,0,0,0,0,0.604780586659361,1.73675465473144,0.153461973288062,0.841980283299221,1.53766979106841,0.511707249066704,0.804269605718038,2.96836132889982,0.771048469013278,0.177561725313127,0.164254312027618,1.03850885836724,0.813472649219715,0,0,0,0.34444334449382,0.182091168006717,0.655622074797121,0,0.0770153371044148,0,0,0,1.13733384070897,0.170093705276516,0.431831832204279,0,0,1.50506932156456,0,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0,0,0,0,3.21367859688319,0.386682873168488,0.462145851343933,0.614014698904518,0.275673144969061,0.107420244868274,0.580066775656914,0.170453254832202,0.178064071293475,0,0.192190067365106,0,0.10115778085555,0.464845549297286,0.31481234683064,0.6970372701606,0,0,0,0.37064843820784,0.286249773483982,1.116475108079,0.949138274156178,1.33441135746677,0.511795582622668,0.42793898803392,0,0.78494864019923,0,0.274537029736055,0.353437207037059,0.202182481573316,0,0.842516912477962,0,0.974853958525138,3.16950440270266,0,0.424216295861138,1.13008116620243,0,1.32687795048244,0.876901770507525,0,0.655894752046633,0,0.92947049429925,0,0.143411352204052,0.0982490410131212,0,0.354761064070598,3.16661452946496,2.96365403663912,0.75894634753143,0.699869440489966,0.0962221127255121,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0.398495976502139,0,0,0,0,0.622079175323615,0,0,0,0.493217028184668,0,0,0,0,0,0.260427761085233,0,0.724999575434793,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0.113942055847001,0,0,0,0.31900115973192,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,1.60515529459758,0,0,0,0,0.394584402849391,0,0,0.505492637027904,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0.160317640503067,0.213452994739353,0.999048047910651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0,0,0.223171457441873,0,0.720599767084807,0,0,0,0.13480708770837,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0.0788057072991982,0.104909176269996,0,0.179287339332845,0,0.714695326373367,0,0,1.08599920350743,1.72844298240254,2.93928624098468,0,0,0,0.226624183040251,0.732761168390412,0,0,0,0.171086837884329,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,1.6468607378872,0,0,0.447764408660622,0.233713309847224,0,0.378806010550178,0.50313580350515,4.44905610798268,0.686520205190771,0.151230923763239,0.777186002913902,0.591420599958536,0.159296767163702,0,0.310525913752519,0.41470620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| ||
|short_description=p@chr17:38609342..38609354,+ | |short_description=p@chr17:38609342..38609354,+ | ||
}} | }} |
Latest revision as of 16:27, 25 July 2015
Short description: | p@chr17:38609342..38609354, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:38609342..38609354, + |
Coexpression cluster: | C353_tenocyte_Nucleus_Chondrocyte_Anulus_Fibroblast_Synoviocyte_tridermal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 9.26e-10 | 3 |
fibrocyte | 9.53e-10 | 3 |
tendon cell | 9.53e-10 | 3 |
GAG secreting cell | 3.33e-08 | 9 |
carbohydrate secreting cell | 3.33e-08 | 9 |
annulus pulposus cell | 3.33e-07 | 2 |
stromal cell | 6.01e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
articulation | 4.44e-18 | 8 |
skeletal joint | 4.44e-18 | 8 |
articular system | 4.44e-18 | 8 |
intervertebral cartilage | 2.81e-15 | 5 |
symphysis | 2.81e-15 | 5 |
nonsynovial joint | 2.81e-15 | 5 |
fibrous joint | 2.81e-15 | 5 |
cartilaginous joint | 2.81e-15 | 5 |
developing mesenchymal condensation | 2.81e-15 | 5 |
pre-cartilage condensation | 2.81e-15 | 5 |
cartilaginous condensation | 2.81e-15 | 5 |
cartilage element | 2.81e-15 | 5 |
post-cranial axial skeletal system | 2.81e-15 | 5 |
vertebral column | 2.81e-15 | 5 |
intervertebral disk | 2.81e-15 | 5 |
intervertebral joint | 2.81e-15 | 5 |
subdivision of skeletal system | 1.56e-10 | 16 |
nucleus pulposus | 9.26e-10 | 3 |
axial mesoderm | 9.26e-10 | 3 |
notochord | 9.26e-10 | 3 |
chordamesoderm | 9.26e-10 | 3 |
dense regular connective tissue | 9.53e-10 | 3 |
tendon | 9.53e-10 | 3 |
regular connective tissue | 9.53e-10 | 3 |
annulus fibrosus | 3.33e-07 | 2 |
fibrocartilage | 3.33e-07 | 2 |
annulus fibrosus disci intervertebralis | 3.33e-07 | 2 |
perirenal fat | 5.04e-07 | 2 |
axial skeletal system | 6.93e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 4.46e-09 | 3 |
leiomyoma | 4.46e-09 | 3 |
benign neoplasm | 6.73e-07 | 4 |