FFCP PHASE1:Hg19::chr12:133287419..133287465,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=192111 | |EntrezGene=192111 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28763 | |HGNC=28763 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001uku.2,uc009zyv.2_5end | |association_with_transcript=0bp_to_uc001uku.2,uc009zyv.2_5end | ||
|cluster_id=chr12:133287419..133287465,+ | |||
|coexpression_cluster_id=C3260 | |coexpression_cluster_id=C3260 | ||
|description=CAGE_peak_1_at_PGAM5_5end | |description=CAGE_peak_1_at_PGAM5_5end | ||
|id=chr12:133287419..133287465,+ | |id=chr12:133287419..133287465,+ | ||
|ontology_enrichment_celltype=CL:1000449;1.35e-07;15!CL:1000497;2.94e-07;17!CL:0002518;2.94e-07;17 | |ontology_enrichment_celltype=CL:0000066!5.94e-26!254;CL:0002321!5.63e-15!248;CL:0000220!2.12e-14!246;CL:0000076!9.21e-09!62;CL:1000449!6.95e-07!16 | ||
| | |ontology_enrichment_celltype_v019=CL:1000449;1.35e-07;15!CL:1000497;2.94e-07;17!CL:0002518;2.94e-07;17 | ||
|ontology_enrichment_disease=DOID:1240;7.76e-09;39!DOID:2531;1.09e-08;51!DOID:0060083;1.09e-08;51!DOID:8692;1.41e-08;31 | |ontology_enrichment_celltype_v019_2=CL:0000066,3.28e-26,253;CL:0002321,4.06e-15,250;CL:0000076,3.76e-08,63;CL:1000449,1.41e-07,15;CL:1000497,2.91e-07,17;CL:0002518,2.91e-07,17 | ||
|ontology_enrichment_uberon=UBERON:0006554;1.08e-08;30!UBERON:0001008;1.08e-08;30!UBERON:0002113;1.17e-08;24!UBERON:0011143;1.17e-08;24!UBERON:0006555;1.35e-07;15!UBERON:0004819;1.35e-07;15!UBERON:0001285;1.35e-07;15!UBERON:0007684;1.35e-07;15!UBERON:0000490;3.85e-07;33!UBERON:0001851;4.20e-07;15!UBERON:0000072;4.57e-07;37!UBERON:0000489;9.16e-07;29 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!1.60e-22!235;DOID:14566!6.63e-22!239;DOID:0050687!1.33e-13!143;DOID:2531!5.87e-13!51;DOID:0060083!5.87e-13!51;DOID:305!6.33e-13!106;DOID:0050686!7.66e-12!137;DOID:1240!6.35e-11!39;DOID:8692!7.73e-09!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;7.76e-09;39!DOID:2531;1.09e-08;51!DOID:0060083;1.09e-08;51!DOID:8692;1.41e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.60e-22,235;DOID:14566,6.63e-22,239;DOID:0050687,1.33e-13,143;DOID:2531,5.87e-13,51;DOID:0060083,5.87e-13,51;DOID:305,6.33e-13,106;DOID:0050686,7.66e-12,137;DOID:1240,6.35e-11,39;DOID:8692,7.73e-09,31 | |||
|ontology_enrichment_uberon=UBERON:0003104!4.74e-11!238;UBERON:0009142!4.74e-11!238;UBERON:0005177!2.20e-09!107;UBERON:0000119!1.02e-07!312;UBERON:0000481!1.19e-07!347;UBERON:0000483!1.51e-07!309;UBERON:0002100!3.53e-07!216;UBERON:0002113!3.75e-07!27;UBERON:0003918!3.75e-07!27;UBERON:0005095!3.75e-07!27;UBERON:0007687!3.75e-07!27;UBERON:0009569!3.79e-07!113;UBERON:0004211!6.95e-07!16;UBERON:0001285!6.95e-07!16;UBERON:0007684!6.95e-07!16;UBERON:0003220!6.95e-07!16;UBERON:0004208!6.95e-07!16;UBERON:0000072!7.36e-07!46;UBERON:0005172!8.96e-07!55;UBERON:0005173!8.96e-07!55;UBERON:0001041!9.64e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.08e-08;30!UBERON:0001008;1.08e-08;30!UBERON:0002113;1.17e-08;24!UBERON:0011143;1.17e-08;24!UBERON:0006555;1.35e-07;15!UBERON:0004819;1.35e-07;15!UBERON:0001285;1.35e-07;15!UBERON:0007684;1.35e-07;15!UBERON:0000490;3.85e-07;33!UBERON:0001851;4.20e-07;15!UBERON:0000072;4.57e-07;37!UBERON:0000489;9.16e-07;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,1.34e-11,101;UBERON:0002100,8.08e-09,199;UBERON:0002113,1.26e-07,26;UBERON:0003918,1.26e-07,26;UBERON:0011143,1.26e-07,26;UBERON:0005095,1.26e-07,26;UBERON:0007687,1.26e-07,26;UBERON:0004211,1.41e-07,15;UBERON:0009773,1.41e-07,15;UBERON:0001231,1.41e-07,15;UBERON:0001285,1.41e-07,15;UBERON:0007684,1.41e-07,15;UBERON:0004208,1.41e-07,15;UBERON:0009569,1.49e-07,112;UBERON:0001851,4.15e-07,15;UBERON:0006555,4.55e-07,16;UBERON:0004819,4.55e-07,16;UBERON:0005172,4.81e-07,54;UBERON:0005173,4.81e-07,54;UBERON:0000119,6.68e-07,309;UBERON:0000483,9.66e-07,306 | |||
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| ||
|short_description=p1@PGAM5 | |short_description=p1@PGAM5 | ||
}} | }} |
Latest revision as of 11:20, 17 September 2015
Short description: | p1@PGAM5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PGAM5_5end |
Coexpression cluster: | C3260_Alveolar_Renal_hepatoblastoma_Keratinocyte_Bronchial_Endothelial_granulocyte |
Association with transcript: | 0bp_to_uc001uku.2, uc009zyv.2_5end |
EntrezGene: | PGAM5 |
HGNC: | 28763 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.28e-26 | 253 |
embryonic cell | 4.06e-15 | 250 |
squamous epithelial cell | 3.76e-08 | 63 |
epithelial cell of nephron | 1.41e-07 | 15 |
kidney cell | 2.91e-07 | 17 |
kidney epithelial cell | 2.91e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 1.34e-11 | 101 |
trunk | 8.08e-09 | 199 |
kidney | 1.26e-07 | 26 |
kidney mesenchyme | 1.26e-07 | 26 |
upper urinary tract | 1.26e-07 | 26 |
kidney rudiment | 1.26e-07 | 26 |
kidney field | 1.26e-07 | 26 |
nephron epithelium | 1.41e-07 | 15 |
renal tubule | 1.41e-07 | 15 |
nephron tubule | 1.41e-07 | 15 |
nephron | 1.41e-07 | 15 |
uriniferous tubule | 1.41e-07 | 15 |
nephrogenic mesenchyme | 1.41e-07 | 15 |
subdivision of trunk | 1.49e-07 | 112 |
cortex | 4.15e-07 | 15 |
excretory tube | 4.55e-07 | 16 |
kidney epithelium | 4.55e-07 | 16 |
abdomen element | 4.81e-07 | 54 |
abdominal segment element | 4.81e-07 | 54 |
cell layer | 6.68e-07 | 309 |
epithelium | 9.66e-07 | 306 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.60e-22 | 235 |
disease of cellular proliferation | 6.63e-22 | 239 |
cell type cancer | 1.33e-13 | 143 |
hematologic cancer | 5.87e-13 | 51 |
immune system cancer | 5.87e-13 | 51 |
carcinoma | 6.33e-13 | 106 |
organ system cancer | 7.66e-12 | 137 |
leukemia | 6.35e-11 | 39 |
myeloid leukemia | 7.73e-09 | 31 |