FFCP PHASE1:Hg19::chr19:3574330..3574393,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10362 | |EntrezGene=10362 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5002 | |HGNC=5002 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=39bp_to_ENST00000486028_5end | |association_with_transcript=39bp_to_ENST00000486028_5end | ||
|cluster_id=chr19:3574330..3574393,+ | |||
|coexpression_cluster_id=C88 | |coexpression_cluster_id=C88 | ||
|description=CAGE_peak_2_at_HMG20B_5end | |description=CAGE_peak_2_at_HMG20B_5end | ||
|id=chr19:3574330..3574393,+ | |id=chr19:3574330..3574393,+ | ||
|ontology_enrichment_celltype=CL:0000148;8.95e-38;10!CL:0000147;2.34e-26;14!CL:0002322;3.93e-19;5!CL:0000710;8.52e-18;20!CL:0002567;6.46e-13;3!CL:0000075;1.26e-12;27!CL:0002321;3.28e-11;15!CL:0002077;1.14e-08;34!CL:0000453;1.46e-07;5 | |ontology_enrichment_celltype=CL:0000148!2.59e-10!10;CL:0000541!2.59e-10!10 | ||
| | |ontology_enrichment_celltype_v019=CL:0000148;8.95e-38;10!CL:0000147;2.34e-26;14!CL:0002322;3.93e-19;5!CL:0000710;8.52e-18;20!CL:0002567;6.46e-13;3!CL:0000075;1.26e-12;27!CL:0002321;3.28e-11;15!CL:0002077;1.14e-08;34!CL:0000453;1.46e-07;5 | ||
|ontology_enrichment_disease=DOID:1909;2.70e-08;2 | |ontology_enrichment_celltype_v019_2=CL:0000148,8.05e-38,10;CL:0000541,8.05e-38,10;CL:0000147,2.17e-26,14;CL:0002322,3.40e-19,5;CL:0000710,8.10e-18,20;CL:0002567,6.47e-13,3;CL:0000075,1.22e-12,27;CL:0000133,2.43e-10,59;CL:0000333,3.36e-10,41;CL:0002077,1.32e-09,34;CL:0000221,6.22e-08,72;CL:0000453,1.49e-07,5 | ||
|ontology_enrichment_uberon=UBERON:0000473;3.18e-07;8 | |ontology_enrichment_development_v019=UBERON:0009117;1.11e-08;10!UBERON:0005564;1.11e-08;10 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;2.70e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.01e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0003135!8.18e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.18e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.95e-07,8 | |||
|phase1_expression=0.54503513781167,0.642301571672949,0,0,0,0,0,0,0,0,0,0,0.527533956456907,0.247532705920093,0,0,0,0,0,0.123121058076788,0.408001382488506,0,0,0.136874425072884,0.125542639594803,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0.217010870715852,0.223915474239924,0,0.515151135268373,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0.272906150057846,0,0,0.320929027076094,0,0.329851300186716,0.598390972864896,0,0,0,0,0,0,0,1.21079900526674,0,0,0.211255286311942,0,0,0,0.150176892841506,0,0,0.19891667719909,0,0,0,0.889509253863555,0.426730222566507,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0.221533894583621,0,0,0.130059347559878,0,0.276350017785848,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534880391567015,0.144824403882799,0,0,0,0.361439152384566,0,0,0,0,0.0945348171640679,0.443458794925128,0.087834785693126,0.589405839739707,0.364295288292542,0.370784442784429,0.324547393654683,0.348259474598534,0.531831842075461,0.238490624305342,0,0,0,0,0,0,0,0.275118041940067,0.208994966536811,0,0.35576626268671,0,0.402829317109147,0,0.24406205754817,0,0,0.357198913136319,0,0.225222960966644,0,0,0,0,0,0.436094052142534,0,0,0,0.573673241497627,0,0.560677600142307,0,0.24666754841716,0,0,0.163461903113459,0,0,0,0,0,0.149448680551801,0,0,0.280901613404497,0,0.245668634623536,0.103325781175765,0,0,0.910161361938026,0,0.168336113954066,0.125118519871964,0,0,0.30648779579902,0.300476117813194,0.113432183160021,0.179389635688862,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0.201504196455281,0,0,0.818238361772504,0,3.90315859614705,4.24095258628753,7.78499417225773,3.83545903556871,6.05570042101508,0,0,0,0,0,0,0.236613600079688,0.505754070234305,0.241011029883482,0.55146986366197,0.217879444092406,0.71181185733329,0.808987848960987,0.588664395376038,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0.100528972411631,0.0925884451585296,0,1.03993478527958,0,0,0,0.144366447761074,0,0.380508304469197,3.95102198979638,3.43394464837949,0,0.702012795417713,0.148631162288728,0,0,0,0,0,0,0,0.088048434013226,0,0,0,54.1637038312202,138.661798477655,192.236613424477,116.32926329544,144.678282233576,2.70308752059526,40.8731798661727,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0,0,0.197030760201927,0,0.513372145118994,0.508189248444927,0,0,0,0,0.749007023947182,0,0,0,0.500170521059677,0,0,0,0,0.117141414992713,0,0,1.03473071292505,0,0.184369168541703,0.0868836144680828,0.195801157462741,0,0,0.431428401637234,0.213455115606889,0,0,0,0.496215615637554,0,0.280660094433074,0.128139149255701,0,0,0,0,0.355123450626254,0.0821271560138091,0,0.116210378459959,0,0.40101294060657,0.276242966807689,0.229628896329213,0,0.131124414959424,0,0.0770153371044148,0,0,0.105551628892876,0,0.340187410553031,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0.824328093181778,0,0.247528499761764,0.574265537996172,0,0,0.096670718292122,0,0,0.137836572484531,0,0,0,0,0.165284915360978,0,0.382838137483752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.975267478179181,0.731140468893853,0,0,0.282810863907425,0,0,0,0,0.578775534266688,7.21484227251296,0,0,0.281695602532241,0.143411352204052,0,0,0,0,0.329294892959902,0,0.349934720244983,0.0962221127255121,0,0,0.376575203107117,0,0,0.443430153536676,0,0.507447609232169,0,0,0,0,0.648473311192717,0,0,0,0,0.245040215981032,0,0,0.0711418433484141,0,0,0,0.211673582723883,0.324621940274555,0,0.228234679033192,0,2.50634477090067,0.169291777801603,0.1605880751037,0,0,0,2.76516687877612,4.2498460499559,4.83862510964535,0,0.278406173895242,0,0,0,1.4098700508785,2.61996756571508,0.146508179271894,0,0.111443384277478,0,0.71623345421307,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0.622079175323615,0,0,0.511572370226872,0,0,0,0,0.0927680981618513,0,0.520855522170466,0.262379999988587,0,0,0.254253650292766,3.78220290828698,0,0,0.173624994933292,0,0,0,0,0,0,0.32681539055697,0,0.0769502585037971,0.227884111694002,0.23056390438806,0.269272933229316,0.54323685961004,1.5950057986596,0.641183153813036,3.73124343213044,1.02193298195737,0,0,0,0,0.167821586975843,0,0.158936578980379,0,0.326465616318295,0,0,0,0.265372693510018,0.611030144933625,0,0,0,0.202203398942031,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0.450970258243478,0,0,0.330991955875499,0.313932918407225,0,0,0.138674673013139,0.347119476670262,0,0,0.873633341210151,0,0.19351266257817,0.219267951258557,0,0.678923115418936,0.0882561266915003,0,0,0.19871461170299,0.126621591911757,1.36885967914362,0,0.213452994739353,0.19980960958213,0,0.229073192331831,0,0,0.124252535565433,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0.0671834724867263,0,0,0,0,0,0.0984274815147488,0,0,0.272406812223151,1.44677833618517,1.51293380256957,2.07720169014593,0.899895566206002,0,0.121499113316049,0,0.0788057072991982,0,0,0.35857467866569,0,0,0.662091970365432,0.25426853765475,0,0,0.326587360109409,0,0,0,0.113312091520126,0,0,0.258565912723101,0.13223260174269,0.1710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| ||
|short_description=p2@HMG20B | |short_description=p2@HMG20B | ||
}} | }} |
Latest revision as of 11:01, 17 September 2015
Short description: | p2@HMG20B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HMG20B_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 39bp_to_ENST00000486028_5end |
EntrezGene: | HMG20B |
HGNC: | 5002 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 8.05e-38 | 10 |
melanoblast | 8.05e-38 | 10 |
pigment cell | 2.17e-26 | 14 |
embryonic stem cell | 3.40e-19 | 5 |
neurecto-epithelial cell | 8.10e-18 | 20 |
light melanocyte | 6.47e-13 | 3 |
columnar/cuboidal epithelial cell | 1.22e-12 | 27 |
neurectodermal cell | 2.43e-10 | 59 |
migratory neural crest cell | 3.36e-10 | 41 |
ecto-epithelial cell | 1.32e-09 | 34 |
ectodermal cell | 6.22e-08 | 72 |
Langerhans cell | 1.49e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
testis | 2.95e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.01e-08 | 2 |