FFCP PHASE1:Hg19::chr1:155294342..155294353,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23623 | |EntrezGene=23623 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17153 | |HGNC=17153 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=12bp_to_ENST00000471876_5end | |association_with_transcript=12bp_to_ENST00000471876_5end | ||
|cluster_id=chr1:155294342..155294353,+ | |||
|description=CAGE_peak_4_at_RUSC1_5end | |description=CAGE_peak_4_at_RUSC1_5end | ||
|id=chr1:155294342..155294353,+ | |id=chr1:155294342..155294353,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.79e-30!254;CL:0002321!1.30e-20!248;CL:0000220!3.11e-20!246;CL:0000548!1.95e-17!679;CL:0000004!1.95e-17!679;CL:0000255!1.95e-17!679;CL:0000012!5.28e-17!682;CL:0000055!2.13e-10!180;CL:0000222!2.78e-10!119;CL:0002076!1.59e-09!43;CL:0000003!7.75e-09!722;CL:0000223!2.32e-08!59;CL:1000497!3.17e-08!18;CL:0002518!3.17e-08!18;CL:0002368!1.76e-07!13;CL:1000449!2.24e-07!16;CL:0000076!3.07e-07!62;CL:0000144!3.29e-07!625;CL:0000063!3.91e-07!578 | |ontology_enrichment_celltype=CL:0000066!1.79e-30!254;CL:0002321!1.30e-20!248;CL:0000220!3.11e-20!246;CL:0000548!1.95e-17!679;CL:0000004!1.95e-17!679;CL:0000255!1.95e-17!679;CL:0000012!5.28e-17!682;CL:0000055!2.13e-10!180;CL:0000222!2.78e-10!119;CL:0002076!1.59e-09!43;CL:0000003!7.75e-09!722;CL:0000223!2.32e-08!59;CL:1000497!3.17e-08!18;CL:0002518!3.17e-08!18;CL:0002368!1.76e-07!13;CL:1000449!2.24e-07!16;CL:0000076!3.07e-07!62;CL:0000144!3.29e-07!625;CL:0000063!3.91e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:1000497;2.80e-11;17!CL:0002518;2.80e-11;17!CL:1000449;5.27e-10;15!CL:0002368;2.20e-09;13!CL:0002681;3.40e-09;12!CL:0002584;3.40e-09;12!CL:0002076;4.58e-07;42!CL:1000507;4.83e-07;10!CL:1000494;4.83e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.93e-21,253;CL:1000497,1.68e-11,17;CL:0002518,1.68e-11,17;CL:1000449,5.06e-10,15;CL:0002368,1.36e-09,13;CL:0002681,3.87e-09,12;CL:0002584,3.87e-09,12;CL:0002076,9.90e-09,42;CL:0002321,1.43e-08,250;CL:1000507,3.24e-07,10;CL:1000494,3.24e-07,10;CL:0000223,6.75e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.03e-10!106;DOID:0050687!2.50e-10!143 | |ontology_enrichment_disease=DOID:305!1.03e-10!106;DOID:0050687!2.50e-10!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!1.05e-12!238;UBERON:0009142!1.05e-12!238;UBERON:0006554!1.22e-11!44;UBERON:0001008!6.50e-11!45;UBERON:0002100!7.91e-11!216;UBERON:0005256!1.73e-10!143;UBERON:0004119!2.19e-10!169;UBERON:0000925!2.19e-10!169;UBERON:0006595!2.19e-10!169;UBERON:0003102!4.46e-09!95;UBERON:0003064!2.25e-08!37;UBERON:0000058!1.54e-07!26;UBERON:0000486!1.58e-07!82;UBERON:0000481!2.03e-07!347;UBERON:0001007!2.11e-07!155;UBERON:0001555!2.11e-07!155;UBERON:0007026!2.11e-07!155;UBERON:0004211!2.24e-07!16;UBERON:0001285!2.24e-07!16;UBERON:0007684!2.24e-07!16;UBERON:0003220!2.24e-07!16;UBERON:0004208!2.24e-07!16;UBERON:0000490!2.94e-07!138;UBERON:0000475!6.32e-07!365;UBERON:0004876!7.01e-07!20 | |ontology_enrichment_uberon=UBERON:0003104!1.05e-12!238;UBERON:0009142!1.05e-12!238;UBERON:0006554!1.22e-11!44;UBERON:0001008!6.50e-11!45;UBERON:0002100!7.91e-11!216;UBERON:0005256!1.73e-10!143;UBERON:0004119!2.19e-10!169;UBERON:0000925!2.19e-10!169;UBERON:0006595!2.19e-10!169;UBERON:0003102!4.46e-09!95;UBERON:0003064!2.25e-08!37;UBERON:0000058!1.54e-07!26;UBERON:0000486!1.58e-07!82;UBERON:0000481!2.03e-07!347;UBERON:0001007!2.11e-07!155;UBERON:0001555!2.11e-07!155;UBERON:0007026!2.11e-07!155;UBERON:0004211!2.24e-07!16;UBERON:0001285!2.24e-07!16;UBERON:0007684!2.24e-07!16;UBERON:0003220!2.24e-07!16;UBERON:0004208!2.24e-07!16;UBERON:0000490!2.94e-07!138;UBERON:0000475!6.32e-07!365;UBERON:0004876!7.01e-07!20 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;3.15e-11;30!UBERON:0001008;3.15e-11;30!UBERON:0006555;5.27e-10;15!UBERON:0004819;5.27e-10;15!UBERON:0001285;5.27e-10;15!UBERON:0007684;5.27e-10;15!UBERON:0001225;3.40e-09;12!UBERON:0008987;3.40e-09;12!UBERON:0002113;7.07e-09;24!UBERON:0011143;7.07e-09;24!UBERON:0000353;4.47e-08;15!UBERON:0000489;1.16e-07;29!UBERON:0004211;4.83e-07;10!UBERON:0009773;4.83e-07;10!UBERON:0001231;4.83e-07;10!UBERON:0004810;4.83e-07;10!UBERON:0001851;9.09e-07;15 | |||
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|phase1_expression=0.54503513781167,0.428201047781966,0.281908808191942,0,0.446961094427288,1.74467704820074,2.53299878168311,0.631719873426831,0,1.72013755551056,6.28021051175185,0.655324116390517,1.31883489114227,0.495065411840187,0.662794751455832,0,1.20538905604795,0.730310090387373,0.975865597581014,1.10808952269109,2.65200898617529,0,0.572471974262113,0.958120975510189,1.00434111675842,0.0764134057479513,0,0,0,0,0,6.43594857135249,4.819294700452,1.10926203050036,0,0,0.293600439334847,0,0,0,0.223915474239924,0.32389366601898,0,0.145398238779565,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0.670700859703636,0.255725123687061,0.722878304769133,0.50133791063589,0.434539556882471,0,0.973269740605272,0.661743720148475,0.665188192387692,0.263504357079378,0.0654895377488563,2.5500670180478,1.11235332835329,0.649094787309367,0.174129737299267,0.664789802594326,0,0,0,1.19257444420023,0,0.347140501607594,0,1.25849830862972,0.275118041940067,1.46296476575767,1.55050055501597,0.35576626268671,0.33472061276467,1.20848795132744,0,2.4406205754817,0.367663080345869,0,1.07159673940896,0.22452937262617,0.900891843866578,1.53316637465883,0.949265659568129,0.549605231791222,0,0,1.3082821564276,1.49091585508596,0.379891534993739,0.662045904066094,0.860509862246441,1.41867352879343,0.560677600142307,1.06748995729705,1.48000529050296,0.622422070799533,0.942974704487816,0.980771418680752,1.21085942115945,0.576175924479999,0.468642863667593,0,0,0.597794722207204,1.17434498643765,1.13311061057692,1.26405726032024,0.816616685019573,1.22834317311768,0.413303124703062,0,0.741800787835671,0.910161361938026,0.718618141816238,1.0100166837244,0.625592599359821,1.38532057742091,0.438977620880838,0.612975591598039,0.751190294532984,0.794025282120147,1.79389635688862,0.213557388818567,0.211931901159562,1.50045548042201,0.721367704669072,0.257640540045629,0.37223371266318,1.0126579934476,0.974370051611986,0.504867548488229,0,0.80823028409406,1.06502877754984,1.0075209822764,0.339121184620975,2.51239109112286,2.18196896472668,2.86804595389004,0.731842236777572,0.927708378250397,1.39432731443422,0.829288440122964,0.756962552626885,0.36497735907583,0,0.643240938192885,5.52539685409922,1.39310378409594,0,1.30137480043828,0.337169380156203,0.482022059766964,1.8749975364507,0.871517776369625,0.474541238222193,0.808987848960987,1.37355025587742,1.15424147083917,1.4763109092493,0,0.4115740113314,0,0,0,0,0,0.860919069801795,0.171567810298526,0.878002283269004,3.37205259772859,1.50793458617446,0.833296006426766,0.325808305310325,1.03993478527958,0,0.115930404975077,0.587043471179108,0.577465791044295,0.925971025153221,0.951270761172991,4.74122638775565,0.858486162094873,0.492434012174795,0,0.445893486866185,0.93733833986777,1.17587489739202,0.425325291727159,1.43293636324557,1.45316969256981,0.383382679165211,0,0.176096868026452,0.207328115540772,0,0.12624243342638,0.253991577168676,0.381988425558278,0,0,0.205654985406647,0,0,1.68196626518041,0.43596006883328,1.0267360014933,0.258543431515556,7.15312891703765,1.690605505112,0,0,2.57207374262142,0,2.39779961114489,0.142977993658148,1.08524321078289,1.64648067356154,0.977208552881205,0.355391948742546,0,0.602878754119172,1.74306691720059,0.599837947092342,0,0.502257091432126,0,0.958499421966331,0,1.42636905040718,1.15825045334063,1.02738161275192,1.43248770591916,0,0.197030760201927,0.215627574859517,0,0,0,0,0.167516265334349,0,0,0,0,0.613457458595699,1.50051156317903,0.271265023699736,0.207970861530807,0,0.473107245101804,0.585707074963566,0.300946099727719,0,4.1389228517002,0,0.184369168541703,0.347534457872331,0.783204629850962,1.37257369524342,0,0.215714200818617,0,1.5156378572313,0,3.62868351995616,0,1.2276957863045,1.12264037773229,0.128139149255701,0.511707249066704,0.482561763430822,1.48418066444991,1.3878872442239,1.24293207719189,1.06765302817952,0.519254429183621,2.20799719073923,1.93375119346596,2.20557117333613,0.828728900423067,1.26295892981067,0.910455840033585,0.917870904715969,2.25599806453706,0.539107359730903,7.0591479225917,1.46139224653261,0.316654886678627,3.4120015221269,1.19065593693561,0.431831832204279,4.62681758070868,2.43851793789468,2.50844886927427,3.05851527654046,1.66215201785745,2.0148727924996,0,0,0.512900250232778,0.328014645699706,0,0.206082023295445,3.47963966309705,3.96045599618822,2.87132768998086,1.95018073810956,1.6068392984416,0.48335359146061,0.770243085573222,0.767518373630648,0.827019434907183,0.859361958946189,0.870100163485371,0.681813019328807,0.178064071293475,1.4875642382488,3.45942121257191,3.57315594984836,1.92199783625545,0.929691098594572,0.62962469366128,0.6970372701606,0.308033580176089,0.532306030317022,0.869932992075073,0.74129687641568,0.143124886741991,0.744316738719335,0.949138274156178,1.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| ||
|short_description=p4@RUSC1 | |short_description=p4@RUSC1 | ||
}} | }} |
Latest revision as of 12:42, 17 September 2015
Short description: | p4@RUSC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RUSC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 12bp_to_ENST00000471876_5end |
EntrezGene: | RUSC1 |
HGNC: | 17153 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.93e-21 | 253 |
kidney cell | 1.68e-11 | 17 |
kidney epithelial cell | 1.68e-11 | 17 |
epithelial cell of nephron | 5.06e-10 | 15 |
respiratory epithelial cell | 1.36e-09 | 13 |
kidney cortical cell | 3.87e-09 | 12 |
renal cortical epithelial cell | 3.87e-09 | 12 |
endo-epithelial cell | 9.90e-09 | 42 |
embryonic cell | 1.43e-08 | 250 |
kidney tubule cell | 3.24e-07 | 10 |
nephron tubule epithelial cell | 3.24e-07 | 10 |
endodermal cell | 6.75e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 3.78e-12 | 47 |
renal system | 1.05e-11 | 48 |
nephron epithelium | 5.06e-10 | 15 |
renal tubule | 5.06e-10 | 15 |
nephron tubule | 5.06e-10 | 15 |
nephron | 5.06e-10 | 15 |
uriniferous tubule | 5.06e-10 | 15 |
nephrogenic mesenchyme | 5.06e-10 | 15 |
excretory tube | 3.69e-09 | 16 |
kidney epithelium | 3.69e-09 | 16 |
cortex of kidney | 3.87e-09 | 12 |
renal parenchyma | 3.87e-09 | 12 |
parenchyma | 4.10e-08 | 15 |
kidney | 5.75e-08 | 26 |
kidney mesenchyme | 5.75e-08 | 26 |
upper urinary tract | 5.75e-08 | 26 |
kidney rudiment | 5.75e-08 | 26 |
kidney field | 5.75e-08 | 26 |
nephron tubule epithelium | 3.24e-07 | 10 |
cavitated compound organ | 6.03e-07 | 31 |
cortex | 9.94e-07 | 15 |