FFCP PHASE1:Hg19::chr11:28724222..28724237,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=60bp_to_ENST00000513853_5end | |association_with_transcript=60bp_to_ENST00000513853_5end | ||
|cluster_id=chr11:28724222..28724237,+ | |||
|description=CAGE_peak_2_at_ENST00000513853_5end | |description=CAGE_peak_2_at_ENST00000513853_5end | ||
|id=chr11:28724222..28724237,+ | |id=chr11:28724222..28724237,+ | ||
|ontology_enrichment_celltype=CL:0000220!1.06e-18!246;CL:0002321!2.31e-18!248;CL:0000066!3.01e-14!254;CL:0000071!2.08e-11!18;CL:0002546!2.08e-11!18;CL:0000076!5.71e-11!62;CL:0000222!1.10e-10!119;CL:0002139!5.89e-09!24;CL:0000213!8.58e-09!57;CL:0000215!8.58e-09!57;CL:0000548!6.46e-08!679;CL:0000004!6.46e-08!679;CL:0000255!6.46e-08!679;CL:0000012!9.98e-08!682;CL:0002368!1.44e-07!13;CL:1000413!2.41e-07!9;CL:0000223!6.01e-07!59;CL:0002076!7.19e-07!43;CL:0000359!7.41e-07!32 | |ontology_enrichment_celltype=CL:0000220!1.06e-18!246;CL:0002321!2.31e-18!248;CL:0000066!3.01e-14!254;CL:0000071!2.08e-11!18;CL:0002546!2.08e-11!18;CL:0000076!5.71e-11!62;CL:0000222!1.10e-10!119;CL:0002139!5.89e-09!24;CL:0000213!8.58e-09!57;CL:0000215!8.58e-09!57;CL:0000548!6.46e-08!679;CL:0000004!6.46e-08!679;CL:0000255!6.46e-08!679;CL:0000012!9.98e-08!682;CL:0002368!1.44e-07!13;CL:1000413!2.41e-07!9;CL:0000223!6.01e-07!59;CL:0002076!7.19e-07!43;CL:0000359!7.41e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002589;4.17e-08;2!CL:0002319;4.13e-07;25!CL:0000243;5.09e-07;15!CL:0000125;5.09e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.48e-09,250;CL:0002589,5.29e-08,2;CL:0000076,8.24e-08,63;CL:0000222,1.32e-07,121;CL:0002319,4.80e-07,25;CL:0000243,5.67e-07,15;CL:0000125,5.67e-07,15;CL:0000030,5.67e-07,15;CL:0000339,5.67e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0007123;1.56e-07;5!CL:0000339;5.09e-07;15 | |||
|ontology_enrichment_disease=DOID:305!4.95e-07!106 | |ontology_enrichment_disease=DOID:305!4.95e-07!106 | ||
|ontology_enrichment_disease_v019=DOID:3908;2.51e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3908,2.36e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0001981!3.03e-16!60;UBERON:0007500!3.03e-16!60;UBERON:0004537!3.03e-16!60;UBERON:0006965!3.03e-16!60;UBERON:0002049!1.88e-15!79;UBERON:0007798!1.88e-15!79;UBERON:0003914!3.62e-15!118;UBERON:0001637!4.49e-15!42;UBERON:0003509!4.49e-15!42;UBERON:0004572!4.49e-15!42;UBERON:0004872!5.27e-14!84;UBERON:0000055!6.99e-14!69;UBERON:0004535!2.31e-12!110;UBERON:0000490!3.05e-12!138;UBERON:0000487!7.86e-12!22;UBERON:0001009!1.03e-11!113;UBERON:0004573!1.95e-11!33;UBERON:0004571!1.95e-11!33;UBERON:0001986!2.08e-11!18;UBERON:0004638!2.08e-11!18;UBERON:0004852!2.08e-11!18;UBERON:0000477!5.77e-11!286;UBERON:0004111!1.43e-10!241;UBERON:0000025!2.85e-10!194;UBERON:0006914!6.72e-10!25;UBERON:0000483!8.40e-09!309;UBERON:0000119!1.55e-08!312;UBERON:0000947!1.71e-07!21;UBERON:0010191!1.71e-07!21;UBERON:0003915!2.41e-07!9;UBERON:0004700!2.41e-07!9;UBERON:0001917!2.41e-07!9 | |ontology_enrichment_uberon=UBERON:0001981!3.03e-16!60;UBERON:0007500!3.03e-16!60;UBERON:0004537!3.03e-16!60;UBERON:0006965!3.03e-16!60;UBERON:0002049!1.88e-15!79;UBERON:0007798!1.88e-15!79;UBERON:0003914!3.62e-15!118;UBERON:0001637!4.49e-15!42;UBERON:0003509!4.49e-15!42;UBERON:0004572!4.49e-15!42;UBERON:0004872!5.27e-14!84;UBERON:0000055!6.99e-14!69;UBERON:0004535!2.31e-12!110;UBERON:0000490!3.05e-12!138;UBERON:0000487!7.86e-12!22;UBERON:0001009!1.03e-11!113;UBERON:0004573!1.95e-11!33;UBERON:0004571!1.95e-11!33;UBERON:0001986!2.08e-11!18;UBERON:0004638!2.08e-11!18;UBERON:0004852!2.08e-11!18;UBERON:0000477!5.77e-11!286;UBERON:0004111!1.43e-10!241;UBERON:0000025!2.85e-10!194;UBERON:0006914!6.72e-10!25;UBERON:0000483!8.40e-09!309;UBERON:0000119!1.55e-08!312;UBERON:0000947!1.71e-07!21;UBERON:0010191!1.71e-07!21;UBERON:0003915!2.41e-07!9;UBERON:0004700!2.41e-07!9;UBERON:0001917!2.41e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0001529;4.17e-08;2!UBERON:0007204;4.17e-08;2!UBERON:0002046;1.56e-07;5!UBERON:0000487;9.77e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,1.42e-08,148;UBERON:0007500,3.06e-08,59;UBERON:0001981,3.06e-08,59;UBERON:0004537,3.06e-08,59;UBERON:0006965,3.06e-08,59;UBERON:0001529,5.29e-08,2;UBERON:0007204,5.29e-08,2;UBERON:0001637,1.32e-07,42;UBERON:0003509,1.32e-07,42;UBERON:0004572,1.32e-07,42;UBERON:0002046,1.57e-07,5;UBERON:0004117,1.57e-07,5;UBERON:0007689,1.57e-07,5;UBERON:0007123,1.57e-07,5;UBERON:0003091,1.57e-07,5;UBERON:0003914,6.79e-07,117;UBERON:0004573,8.23e-07,33;UBERON:0004571,8.23e-07,33;UBERON:0000055,9.12e-07,68;UBERON:0000487,9.87e-07,22 | |||
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|short_description=p2@ENST00000513853 | |short_description=p2@ENST00000513853 | ||
}} | }} |
Latest revision as of 21:20, 23 July 2015
Short description: | p2@ENST00000513853 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ENST00000513853_5end |
Coexpression cluster: | NA |
Association with transcript: | 60bp_to_ENST00000513853_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.48e-09 | 250 |
smooth muscle cell of the brachiocephalic vasculature | 5.29e-08 | 2 |
squamous epithelial cell | 8.24e-08 | 63 |
mesodermal cell | 1.32e-07 | 121 |
neural cell | 4.80e-07 | 25 |
glial cell (sensu Vertebrata) | 5.67e-07 | 15 |
glial cell | 5.67e-07 | 15 |
glioblast | 5.67e-07 | 15 |
glioblast (sensu Vertebrata) | 5.67e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
unilaminar epithelium | 1.42e-08 | 148 |
epithelial tube open at both ends | 3.06e-08 | 59 |
blood vessel | 3.06e-08 | 59 |
blood vasculature | 3.06e-08 | 59 |
vascular cord | 3.06e-08 | 59 |
brachiocephalic artery | 5.29e-08 | 2 |
brachiocephalic vasculature | 5.29e-08 | 2 |
artery | 1.32e-07 | 42 |
arterial blood vessel | 1.32e-07 | 42 |
arterial system | 1.32e-07 | 42 |
thyroid gland | 1.57e-07 | 5 |
pharyngeal pouch | 1.57e-07 | 5 |
thyroid diverticulum | 1.57e-07 | 5 |
pharyngeal pouch 2 | 1.57e-07 | 5 |
thyroid primordium | 1.57e-07 | 5 |
epithelial tube | 6.79e-07 | 117 |
systemic artery | 8.23e-07 | 33 |
systemic arterial system | 8.23e-07 | 33 |
vessel | 9.12e-07 | 68 |
simple squamous epithelium | 9.87e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
non-small cell lung carcinoma | 2.36e-07 | 5 |