FFCP PHASE1:Hg19::chr2:27717659..27717670,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64838 | |EntrezGene=64838 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20239 | |HGNC=20239 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=8bp_to_ENST00000476197_5end | |association_with_transcript=8bp_to_ENST00000476197_5end | ||
|cluster_id=chr2:27717659..27717670,- | |||
|description=CAGE_peak_4_at_FNDC4_5end | |description=CAGE_peak_4_at_FNDC4_5end | ||
|id=chr2:27717659..27717670,- | |id=chr2:27717659..27717670,- | ||
|ontology_enrichment_celltype=CL:0000136!3.39e-09!15;CL:0000055!9.78e-09!180;CL:0000680!5.68e-08!57;CL:0000056!5.68e-08!57;CL:0000355!5.68e-08!57;CL:0000187!2.99e-07!54;CL:0000359!3.99e-07!32;CL:0000183!7.16e-07!59 | |ontology_enrichment_celltype=CL:0000136!3.39e-09!15;CL:0000055!9.78e-09!180;CL:0000680!5.68e-08!57;CL:0000056!5.68e-08!57;CL:0000355!5.68e-08!57;CL:0000187!2.99e-07!54;CL:0000359!3.99e-07!32;CL:0000183!7.16e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002521;1.10e-30;3!CL:0000136;1.46e-12;13!CL:0002591;1.06e-11;1!CL:0002559;5.38e-09;5!CL:0002595;7.54e-09;5!CL:0000359;5.44e-08;32!CL:0002551;1.23e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002521,1.66e-30,3;CL:0002591,1.06e-11,1;CL:0000136,7.89e-11,15;CL:0002559,4.87e-09,5;CL:0002595,9.95e-09,5;CL:0000359,1.02e-07,32;CL:0002551,1.13e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.73e-12!83;UBERON:0002329!2.73e-12!83;UBERON:0003077!2.73e-12!83;UBERON:0003059!2.73e-12!83;UBERON:0007282!2.73e-12!83;UBERON:0009618!2.73e-12!83;UBERON:0007285!2.73e-12!83;UBERON:0001637!1.22e-09!42;UBERON:0003509!1.22e-09!42;UBERON:0004572!1.22e-09!42;UBERON:0000486!3.67e-09!82;UBERON:0004290!5.87e-09!70;UBERON:0000025!2.61e-08!194;UBERON:0005256!4.14e-08!143;UBERON:0001981!4.33e-08!60;UBERON:0007500!4.33e-08!60;UBERON:0004537!4.33e-08!60;UBERON:0006965!4.33e-08!60;UBERON:0000483!4.36e-08!309;UBERON:0003914!6.44e-08!118;UBERON:0002385!7.13e-08!63;UBERON:0001015!7.13e-08!63;UBERON:0000383!7.13e-08!63;UBERON:0000119!8.23e-08!312;UBERON:0004573!8.94e-08!33;UBERON:0004571!8.94e-08!33;UBERON:0001134!1.30e-07!61;UBERON:0002036!1.30e-07!61;UBERON:0003082!1.30e-07!61;UBERON:0004872!1.99e-07!84;UBERON:0002090!3.15e-07!6;UBERON:0000475!5.52e-07!365;UBERON:0000055!8.64e-07!69 | |ontology_enrichment_uberon=UBERON:0000914!2.73e-12!83;UBERON:0002329!2.73e-12!83;UBERON:0003077!2.73e-12!83;UBERON:0003059!2.73e-12!83;UBERON:0007282!2.73e-12!83;UBERON:0009618!2.73e-12!83;UBERON:0007285!2.73e-12!83;UBERON:0001637!1.22e-09!42;UBERON:0003509!1.22e-09!42;UBERON:0004572!1.22e-09!42;UBERON:0000486!3.67e-09!82;UBERON:0004290!5.87e-09!70;UBERON:0000025!2.61e-08!194;UBERON:0005256!4.14e-08!143;UBERON:0001981!4.33e-08!60;UBERON:0007500!4.33e-08!60;UBERON:0004537!4.33e-08!60;UBERON:0006965!4.33e-08!60;UBERON:0000483!4.36e-08!309;UBERON:0003914!6.44e-08!118;UBERON:0002385!7.13e-08!63;UBERON:0001015!7.13e-08!63;UBERON:0000383!7.13e-08!63;UBERON:0000119!8.23e-08!312;UBERON:0004573!8.94e-08!33;UBERON:0004571!8.94e-08!33;UBERON:0001134!1.30e-07!61;UBERON:0002036!1.30e-07!61;UBERON:0003082!1.30e-07!61;UBERON:0004872!1.99e-07!84;UBERON:0002090!3.15e-07!6;UBERON:0000475!5.52e-07!365;UBERON:0000055!8.64e-07!69 | ||
|ontology_enrichment_uberon_v019=UBERON:0002190;1.10e-30;3!UBERON:0002072;1.09e-18;5!UBERON:0001013;1.12e-11;14!UBERON:0002067;1.38e-10;9!UBERON:0002073;5.38e-09;5!UBERON:0003834;7.54e-09;5!UBERON:0001533;7.54e-09;5!UBERON:0003102;5.54e-07;50!UBERON:0002199;8.98e-07;46!UBERON:0002416;8.98e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002190,1.66e-30,3;UBERON:0002072,1.39e-18,5;UBERON:0001013,1.07e-11,14;UBERON:0002067,1.21e-10,9;UBERON:0004016,1.21e-10,9;UBERON:0010083,1.21e-10,9;UBERON:0002199,5.07e-10,46;UBERON:0002416,5.07e-10,46;UBERON:0003498,4.15e-09,5;UBERON:0005985,4.15e-09,5;UBERON:0002073,4.87e-09,5;UBERON:0005086,4.87e-09,5;UBERON:0003834,9.95e-09,5;UBERON:0001533,9.95e-09,5;UBERON:0005256,2.62e-08,122;UBERON:0002329,4.48e-08,71;UBERON:0003059,4.48e-08,71;UBERON:0007282,4.48e-08,71;UBERON:0004290,4.48e-08,71;UBERON:0009618,4.48e-08,71;UBERON:0003077,5.98e-08,72;UBERON:0007285,5.98e-08,72;UBERON:0007524,7.92e-08,73;UBERON:0007503,2.91e-07,78;UBERON:0000486,9.12e-07,83 | |||
|phase1_expression=0,1.07050261945492,0.140954404095971,0,0,0,5.06599756336621,1.26343974685366,1.30592814099919,0,0,0,0.263766978228454,0.247532705920093,0.331397375727916,0,0,0,0,0,0,0,0.286235987131057,0.273748850145768,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0.361439152384566,0,0.289693037921647,0,0.486634870302636,0.0945348171640679,0,0,0.130979075497713,0.364295288292542,0,0,0,0,0,0,0,0.198762407366705,0,0,0.56530794192401,0.419499436209906,0,0,0,0.35576626268671,0,0,0,0,0,0.81014194788176,0.0892997282840798,0.22452937262617,0,0,0,0.183201743930407,0,0,0,0.496971951695318,0.12663051166458,0,0,0.354668382198357,0,0,0.24666754841716,0.311211035399766,0,0.490385709340376,0,0,0,1.5608003841516,2.2818872861778,0.448346041655403,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0.877955241761676,0,0,0.113432183160021,0,0,0.211931901159562,0,0,0,0.18611685633159,0,0,0,0.0920498986422993,0.161646056818812,0,0.10075209822764,0,0.193260853163297,0,0,0.121973706129595,0,0,0,0,0,0,0,1.38134921352481,0,2.88751792667834,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0.982827216677626,1.77236972004421,0,0,0,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0.283550194484773,0.268675568108545,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514414748524284,0,1.0656887160644,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.24538298343828,0,0,0,0,0,0,0.300946099727719,0,0,0.664225598535437,0.553107505625109,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0,0,0,0.177561725313127,0.164254312027618,0,0.348631135379878,0,0,0,0,0,0.393373244878272,0,0.15403067420883,0,0,0,0,0,0,0,0.541892875087706,0,0,0,0.223874754722178,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0.308097234229289,0.15350367472613,0.137836572484531,0,0,0.0852266274161009,0,0.165284915360978,0.384380134730212,0,0.10115778085555,0,0.31481234683064,2.7881490806424,0,0,0.869932992075073,0.55597265731176,0.715624433709956,0,0,0,0.255897791311334,0,0,0.78494864019923,0.179872457583315,0,0,0.606547444719948,1.58510321173008,0,0,0.243713489631284,1.05650146756755,0,0,3.39024349860728,0.551365343546124,0,1.31535265576129,0,0,0.202910376962704,0,0.563391205064483,0,0.0982490410131212,0,0.354761064070598,0.422215270595328,0,0,0,0,0,0,0.188287601553558,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0.622079175323615,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0.19871461170299,0.189932387867636,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0.429765441419957,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0.13480708770837,0,0,0,0,0,0,0,0.2249738915515,1.5476039091159,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0.979762080328227,0,0,0.170388021785422,0,4.68967147769864,1.32506888912221,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0.7520696820681,0.306345576763462,0.655745261419609,0,0.886068179966986,0.244052529803926,0.1251909307065,0,0,0.124192805882767,0,0,0,0,0,0,0,0.149254802886874,0,1.66441758450784,0.568209015825267,0.754703705257725,0,0,1.05861646634267,0,0.73927574994817,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0.352675943690684,0,0.0642292250964595,0,0,0.205116364240755,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.135075169236789,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.0657727735628491,0,0,0,0.157115589916002,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0.118332000730565,0.170426809518315,0,0,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0.297046400327086,0,0.339854229375634,0,0,0,0,0,0,0,0,0.143339583151451,0,0.135982980381829,0,0,0,0,0.865253124247578,0,0,0.380095503034311,0.101988829741982,0,0.459474497674225,0,0.227336094654718,0,0,0,0,0,0,0.0620747142958579,0,0.12729431655633,0,0,0,0,0,0,0,0,0,0.359300808426348,0,0,0,0,0,0 | |phase1_expression=0,1.07050261945492,0.140954404095971,0,0,0,5.06599756336621,1.26343974685366,1.30592814099919,0,0,0,0.263766978228454,0.247532705920093,0.331397375727916,0,0,0,0,0,0,0,0.286235987131057,0.273748850145768,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0.361439152384566,0,0.289693037921647,0,0.486634870302636,0.0945348171640679,0,0,0.130979075497713,0.364295288292542,0,0,0,0,0,0,0,0.198762407366705,0,0,0.56530794192401,0.419499436209906,0,0,0,0.35576626268671,0,0,0,0,0,0.81014194788176,0.0892997282840798,0.22452937262617,0,0,0,0.183201743930407,0,0,0,0.496971951695318,0.12663051166458,0,0,0.354668382198357,0,0,0.24666754841716,0.311211035399766,0,0.490385709340376,0,0,0,1.5608003841516,2.2818872861778,0.448346041655403,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0.877955241761676,0,0,0.113432183160021,0,0,0.211931901159562,0,0,0,0.18611685633159,0,0,0,0.0920498986422993,0.161646056818812,0,0.10075209822764,0,0.193260853163297,0,0,0.121973706129595,0,0,0,0,0,0,0,1.38134921352481,0,2.88751792667834,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0.982827216677626,1.77236972004421,0,0,0,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0.283550194484773,0.268675568108545,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514414748524284,0,1.0656887160644,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.24538298343828,0,0,0,0,0,0,0.300946099727719,0,0,0.664225598535437,0.553107505625109,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0,0,0,0.177561725313127,0.164254312027618,0,0.348631135379878,0,0,0,0,0,0.393373244878272,0,0.15403067420883,0,0,0,0,0,0,0,0.541892875087706,0,0,0,0.223874754722178,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0.308097234229289,0.15350367472613,0.137836572484531,0,0,0.0852266274161009,0,0.165284915360978,0.384380134730212,0,0.10115778085555,0,0.31481234683064,2.7881490806424,0,0,0.869932992075073,0.55597265731176,0.715624433709956,0,0,0,0.255897791311334,0,0,0.78494864019923,0.179872457583315,0,0,0.606547444719948,1.58510321173008,0,0,0.243713489631284,1.05650146756755,0,0,3.39024349860728,0.551365343546124,0,1.31535265576129,0,0,0.202910376962704,0,0.563391205064483,0,0.0982490410131212,0,0.354761064070598,0.422215270595328,0,0,0,0,0,0,0.188287601553558,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0.622079175323615,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0.19871461170299,0.189932387867636,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0.429765441419957,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0.13480708770837,0,0,0,0,0,0,0,0.2249738915515,1.5476039091159,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0.979762080328227,0,0,0.170388021785422,0,4.68967147769864,1.32506888912221,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0.7520696820681,0.306345576763462,0.655745261419609,0,0.886068179966986,0.244052529803926,0.1251909307065,0,0,0.124192805882767,0,0,0,0,0,0,0,0.149254802886874,0,1.66441758450784,0.568209015825267,0.754703705257725,0,0,1.05861646634267,0,0.73927574994817,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0.352675943690684,0,0.0642292250964595,0,0,0.205116364240755,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.135075169236789,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.0657727735628491,0,0,0,0.157115589916002,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0.118332000730565,0.170426809518315,0,0,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0.297046400327086,0,0.339854229375634,0,0,0,0,0,0,0,0,0.143339583151451,0,0.135982980381829,0,0,0,0,0.865253124247578,0,0,0.380095503034311,0.101988829741982,0,0.459474497674225,0,0.227336094654718,0,0,0,0,0,0,0.0620747142958579,0,0.12729431655633,0,0,0,0,0,0,0,0,0,0.359300808426348,0,0,0,0,0,0 | ||
|short_description=p4@FNDC4 | |short_description=p4@FNDC4 | ||
}} | }} |
Latest revision as of 17:44, 16 September 2015
Short description: | p4@FNDC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_FNDC4_5end |
Coexpression cluster: | NA |
Association with transcript: | 8bp_to_ENST00000476197_5end |
EntrezGene: | FNDC4 |
HGNC: | 20239 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
subcutaneous fat cell | 1.66e-30 | 3 |
smooth muscle cell of the pulmonary artery | 1.06e-11 | 1 |
fat cell | 7.89e-11 | 15 |
hair follicle cell | 4.87e-09 | 5 |
smooth muscle cell of the subclavian artery | 9.95e-09 | 5 |
vascular associated smooth muscle cell | 1.02e-07 | 32 |
fibroblast of dermis | 1.13e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
subcutaneous adipose tissue | 1.66e-30 | 3 |
hypodermis | 1.39e-18 | 5 |
adipose tissue | 1.07e-11 | 14 |
dermis | 1.21e-10 | 9 |
dermatome | 1.21e-10 | 9 |
future dermis | 1.21e-10 | 9 |
integument | 5.07e-10 | 46 |
integumental system | 5.07e-10 | 46 |
heart blood vessel | 4.15e-09 | 5 |
coronary vessel | 4.15e-09 | 5 |
hair follicle | 4.87e-09 | 5 |
hair follicle placode | 4.87e-09 | 5 |
thoracic segment blood vessel | 9.95e-09 | 5 |
subclavian artery | 9.95e-09 | 5 |
trunk mesenchyme | 2.62e-08 | 122 |
somite | 4.48e-08 | 71 |
presomitic mesoderm | 4.48e-08 | 71 |
presumptive segmental plate | 4.48e-08 | 71 |
dermomyotome | 4.48e-08 | 71 |
trunk paraxial mesoderm | 4.48e-08 | 71 |
paraxial mesoderm | 5.98e-08 | 72 |
presumptive paraxial mesoderm | 5.98e-08 | 72 |
dense mesenchyme tissue | 7.92e-08 | 73 |
epithelial vesicle | 2.91e-07 | 78 |
multilaminar epithelium | 9.12e-07 | 83 |