FFCP PHASE1:Hg19::chr19:7861495..7861500,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:7861495..7861500,+ | |||
|coexpression_cluster_id=C1157 | |coexpression_cluster_id=C1157 | ||
|description=CAGE_peak_at_chr19:7861495..7861500,+ | |description=CAGE_peak_at_chr19:7861495..7861500,+ | ||
|id=chr19:7861495..7861500,+ | |id=chr19:7861495..7861500,+ | ||
|ontology_enrichment_celltype=CL:0002543!3.73e-91!6;CL:0002618!4.71e-66!3;CL:0000071!1.03e-30!18;CL:0002546!1.03e-30!18;CL:0002139!3.98e-23!24;CL:0000115!9.99e-23!35;CL:0002078!4.20e-18!44;CL:0000213!5.45e-14!57;CL:0000215!5.45e-14!57;CL:0002262!1.48e-12!2;CL:1000398!1.48e-12!2;CL:0000076!4.40e-09!62 | |ontology_enrichment_celltype=CL:0002543!3.73e-91!6;CL:0002618!4.71e-66!3;CL:0000071!1.03e-30!18;CL:0002546!1.03e-30!18;CL:0002139!3.98e-23!24;CL:0000115!9.99e-23!35;CL:0002078!4.20e-18!44;CL:0000213!5.45e-14!57;CL:0000215!5.45e-14!57;CL:0002262!1.48e-12!2;CL:1000398!1.48e-12!2;CL:0000076!4.40e-09!62 | ||
|ontology_enrichment_celltype_v019=CL:0002262;2.74e-50;2!CL:1000398;2.74e-50;2!CL:0002618;5.96e-34;3!CL:0002543;9.07e-18;6!CL:0000115;1.64e-10;36!CL:0002078;8.88e-10;45!CL:0000182;1.22e-09;12!CL:0000071;7.60e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002262,2.74e-50,2;CL:1000398,2.74e-50,2;CL:0002618,5.96e-34,3;CL:0002543,9.07e-18,6;CL:0000115,2.91e-12,36;CL:0002078,4.55e-10,45;CL:0000182,1.22e-09,12;CL:0000213,4.33e-08,58;CL:0000215,4.33e-08,58;CL:0000071,7.60e-07,18;CL:0002546,7.60e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;7.60e-07;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001638!5.76e-61!9;UBERON:0003920!5.76e-61!9;UBERON:0004582!5.76e-61!9;UBERON:0002066!4.98e-40!5;UBERON:0001986!1.03e-30!18;UBERON:0004638!1.03e-30!18;UBERON:0004852!1.03e-30!18;UBERON:0000487!3.38e-25!22;UBERON:0000998!4.10e-23!1;UBERON:0006868!4.10e-23!1;UBERON:0006914!3.25e-22!25;UBERON:0001981!2.72e-13!60;UBERON:0007500!2.72e-13!60;UBERON:0004537!2.72e-13!60;UBERON:0006965!2.72e-13!60;UBERON:0004872!8.71e-13!84;UBERON:0000055!1.47e-11!69;UBERON:0002049!4.29e-10!79;UBERON:0007798!4.29e-10!79;UBERON:0003497!8.31e-09!3;UBERON:0003909!8.31e-09!3;UBERON:0003835!8.31e-09!3;UBERON:0001281!8.31e-09!3;UBERON:0006947!1.30e-08!3;UBERON:0004054!1.30e-08!3;UBERON:0004535!3.15e-07!110;UBERON:0001009!4.94e-07!113;UBERON:0001280!6.50e-07!4;UBERON:0004647!6.50e-07!4;UBERON:0001987!8.14e-07!4;UBERON:0004340!8.14e-07!4;UBERON:0005904!9.11e-07!4;UBERON:0003914!9.94e-07!118 | |ontology_enrichment_uberon=UBERON:0001638!5.76e-61!9;UBERON:0003920!5.76e-61!9;UBERON:0004582!5.76e-61!9;UBERON:0002066!4.98e-40!5;UBERON:0001986!1.03e-30!18;UBERON:0004638!1.03e-30!18;UBERON:0004852!1.03e-30!18;UBERON:0000487!3.38e-25!22;UBERON:0000998!4.10e-23!1;UBERON:0006868!4.10e-23!1;UBERON:0006914!3.25e-22!25;UBERON:0001981!2.72e-13!60;UBERON:0007500!2.72e-13!60;UBERON:0004537!2.72e-13!60;UBERON:0006965!2.72e-13!60;UBERON:0004872!8.71e-13!84;UBERON:0000055!1.47e-11!69;UBERON:0002049!4.29e-10!79;UBERON:0007798!4.29e-10!79;UBERON:0003497!8.31e-09!3;UBERON:0003909!8.31e-09!3;UBERON:0003835!8.31e-09!3;UBERON:0001281!8.31e-09!3;UBERON:0006947!1.30e-08!3;UBERON:0004054!1.30e-08!3;UBERON:0004535!3.15e-07!110;UBERON:0001009!4.94e-07!113;UBERON:0001280!6.50e-07!4;UBERON:0004647!6.50e-07!4;UBERON:0001987!8.14e-07!4;UBERON:0004340!8.14e-07!4;UBERON:0005904!9.11e-07!4;UBERON:0003914!9.94e-07!118 | ||
|ontology_enrichment_uberon_v019=UBERON:0001281;2.74e-50;2!UBERON:0003497;2.74e-50;2!UBERON:0003909;2.74e-50;2!UBERON:0003835;2.74e-50;2!UBERON:0001280;4.27e-34;3!UBERON:0004647;4.27e-34;3!UBERON:0002066;5.15e-21;5!UBERON:0003513;1.65e-15;7!UBERON:0001638;2.45e-12;9!UBERON:0010260;2.45e-12;9!UBERON:0003920;2.45e-12;9!UBERON:0004582;2.45e-12;9!UBERON:0000353;5.55e-08;15!UBERON:0000055;3.43e-07;65!UBERON:0004638;7.60e-07;18!UBERON:0001986;7.60e-07;18!UBERON:0004852;7.60e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001281,2.74e-50,2;UBERON:0003497,2.74e-50,2;UBERON:0003909,2.74e-50,2;UBERON:0003835,2.74e-50,2;UBERON:0001280,4.27e-34,3;UBERON:0004647,4.27e-34,3;UBERON:0005171,4.27e-34,3;UBERON:0002066,5.15e-21,5;UBERON:0002394,7.67e-18,6;UBERON:0003928,7.67e-18,6;UBERON:0003513,1.65e-15,7;UBERON:0002294,2.19e-12,9;UBERON:0001173,2.19e-12,9;UBERON:0004912,2.19e-12,9;UBERON:0001638,2.45e-12,9;UBERON:0010260,2.45e-12,9;UBERON:0003920,2.45e-12,9;UBERON:0004582,2.45e-12,9;UBERON:0000353,5.55e-08,15;UBERON:0007500,5.66e-08,59;UBERON:0001981,5.66e-08,59;UBERON:0004537,5.66e-08,59;UBERON:0006965,5.66e-08,59;UBERON:0000055,4.47e-07,68;UBERON:0004638,7.60e-07,18;UBERON:0001986,7.60e-07,18;UBERON:0004852,7.60e-07,18 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96459402224975,0.44905874525234,0.337834441449967,0,0.949265659568129,0.549605231791222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.95262181849859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532214220975833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96459402224975,0.44905874525234,0.337834441449967,0,0.949265659568129,0.549605231791222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.95262181849859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532214220975833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:7861495..7861500,+ | |short_description=p@chr19:7861495..7861500,+ | ||
}} | }} |
Latest revision as of 18:32, 27 July 2015
Short description: | p@chr19:7861495..7861500, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:7861495..7861500, + |
Coexpression cluster: | C1157_Hepatic_neuroectodermal_liver_Hepatocyte_Adipocyte_spleen_kidney |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of sinusoid | 2.74e-50 | 2 |
endothelial cell of hepatic sinusoid | 2.74e-50 | 2 |
endothelial cell of umbilical vein | 5.96e-34 | 3 |
vein endothelial cell | 9.07e-18 | 6 |
endothelial cell | 2.91e-12 | 36 |
meso-epithelial cell | 4.55e-10 | 45 |
hepatocyte | 1.22e-09 | 12 |
lining cell | 4.33e-08 | 58 |
barrier cell | 4.33e-08 | 58 |
blood vessel endothelial cell | 7.60e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.60e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
hepatic sinusoid | 2.74e-50 | 2 |
abdomen blood vessel | 2.74e-50 | 2 |
sinusoid | 2.74e-50 | 2 |
abdominal segment blood vessel | 2.74e-50 | 2 |
liver parenchyma | 4.27e-34 | 3 |
liver lobule | 4.27e-34 | 3 |
hepatic duct | 4.27e-34 | 3 |
umbilical vein | 5.15e-21 | 5 |
bile duct | 7.67e-18 | 6 |
digestive system duct | 7.67e-18 | 6 |
trunk blood vessel | 1.65e-15 | 7 |
biliary system | 2.19e-12 | 9 |
biliary tree | 2.19e-12 | 9 |
biliary bud | 2.19e-12 | 9 |
vein | 2.45e-12 | 9 |
umbilical blood vessel | 2.45e-12 | 9 |
venous blood vessel | 2.45e-12 | 9 |
venous system | 2.45e-12 | 9 |
parenchyma | 5.55e-08 | 15 |
epithelial tube open at both ends | 5.66e-08 | 59 |
blood vessel | 5.66e-08 | 59 |
blood vasculature | 5.66e-08 | 59 |
vascular cord | 5.66e-08 | 59 |
vessel | 4.47e-07 | 68 |
blood vessel endothelium | 7.60e-07 | 18 |
endothelium | 7.60e-07 | 18 |
cardiovascular system endothelium | 7.60e-07 | 18 |