FFCP PHASE1:Hg19::chr3:98671855..98671858,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:98671855..98671858,+ | |||
|description=CAGE_peak_at_chr3:98671855..98671858,+ | |description=CAGE_peak_at_chr3:98671855..98671858,+ | ||
|id=chr3:98671855..98671858,+ | |id=chr3:98671855..98671858,+ | ||
|ontology_enrichment_celltype=CL:0000064!7.00e-43!3;CL:0005012!7.00e-43!3;CL:0000067!7.00e-43!3;CL:0002304!7.00e-43!3;CL:0000342!9.99e-16!1;CL:0002565!9.99e-16!1;CL:0000710!1.30e-11!20;CL:0000133!6.21e-11!59;CL:0000147!9.24e-10!14;CL:0000221!4.75e-09!71;CL:0000075!1.14e-08!27;CL:0000243!3.38e-08!15;CL:0000125!3.38e-08!15;CL:0000030!3.38e-08!15;CL:0000339!3.38e-08!15;CL:0000095!2.18e-07!17;CL:0000123!2.18e-07!17;CL:0002077!3.94e-07!33 | |ontology_enrichment_celltype=CL:0000064!7.00e-43!3;CL:0005012!7.00e-43!3;CL:0000067!7.00e-43!3;CL:0002304!7.00e-43!3;CL:0000342!9.99e-16!1;CL:0002565!9.99e-16!1;CL:0000710!1.30e-11!20;CL:0000133!6.21e-11!59;CL:0000147!9.24e-10!14;CL:0000221!4.75e-09!71;CL:0000075!1.14e-08!27;CL:0000243!3.38e-08!15;CL:0000125!3.38e-08!15;CL:0000030!3.38e-08!15;CL:0000339!3.38e-08!15;CL:0000095!2.18e-07!17;CL:0000123!2.18e-07!17;CL:0002077!3.94e-07!33 | ||
|ontology_enrichment_celltype_v019=CL:0000342;2.21e-40;1!CL:0002565;2.21e-40;1!CL:0000243;2.58e-10;15!CL:0000125;2.58e-10;15!CL:0000095;2.46e-09;17!CL:0002149;5.73e-08;6!CL:0002255;5.73e-08;6!CL:0002319;7.45e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000342,3.30e-40,1;CL:0002565,3.30e-40,1;CL:0000243,2.46e-10,15;CL:0000125,2.46e-10,15;CL:0000030,2.46e-10,15;CL:0000339,2.46e-10,15;CL:0000095,2.36e-09,17;CL:0000123,2.36e-09,17;CL:0002149,5.92e-08,6;CL:0002255,5.92e-08,6;CL:0002319,7.24e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0006238;2.33e-15;10!CL:0000339;2.58e-10;15 | |||
|ontology_enrichment_disease=DOID:4929!1.20e-08!2 | |ontology_enrichment_disease=DOID:4929!1.20e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:4929;3.44e-21;2!DOID:3093;3.59e-14;11!DOID:3001;5.73e-08;6!DOID:299;2.13e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,3.11e-21,2;DOID:3093,3.36e-14,11;DOID:3001,5.92e-08,6;DOID:299,2.14e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0000488!9.21e-57!4;UBERON:0001778!7.00e-43!3;UBERON:0001775!7.00e-43!3;UBERON:0002203!4.98e-38!6;UBERON:0001768!4.98e-38!6;UBERON:0007625!3.31e-32!11;UBERON:0002200!5.98e-21!11;UBERON:0006876!5.98e-21!11;UBERON:0000019!1.06e-18!19;UBERON:0000047!1.06e-18!19;UBERON:0004088!1.06e-18!19;UBERON:0003072!1.06e-18!19;UBERON:0003071!1.06e-18!19;UBERON:0004128!1.06e-18!19;UBERON:0000970!9.02e-18!20;UBERON:0002104!6.29e-17!21;UBERON:0001456!6.29e-17!21;UBERON:0001801!1.53e-16!14;UBERON:0004913!5.56e-16!1;UBERON:0003703!5.56e-16!1;UBERON:0001174!5.56e-16!1;UBERON:0004914!5.56e-16!1;UBERON:0002506!9.99e-16!1;UBERON:0001769!9.99e-16!1;UBERON:0000020!1.84e-15!23;UBERON:0002372!2.75e-15!1;UBERON:0001961!2.75e-15!1;UBERON:0001744!2.75e-15!1;UBERON:0001735!2.75e-15!1;UBERON:0001032!8.09e-15!24;UBERON:0004456!8.09e-15!24;UBERON:0005085!2.88e-12!29;UBERON:0001444!2.26e-10!48;UBERON:0000153!8.59e-10!129;UBERON:0007811!8.59e-10!129;UBERON:0000063!1.30e-08!97;UBERON:0000033!2.53e-08!123 | |ontology_enrichment_uberon=UBERON:0000488!9.21e-57!4;UBERON:0001778!7.00e-43!3;UBERON:0001775!7.00e-43!3;UBERON:0002203!4.98e-38!6;UBERON:0001768!4.98e-38!6;UBERON:0007625!3.31e-32!11;UBERON:0002200!5.98e-21!11;UBERON:0006876!5.98e-21!11;UBERON:0000019!1.06e-18!19;UBERON:0000047!1.06e-18!19;UBERON:0004088!1.06e-18!19;UBERON:0003072!1.06e-18!19;UBERON:0003071!1.06e-18!19;UBERON:0004128!1.06e-18!19;UBERON:0000970!9.02e-18!20;UBERON:0002104!6.29e-17!21;UBERON:0001456!6.29e-17!21;UBERON:0001801!1.53e-16!14;UBERON:0004913!5.56e-16!1;UBERON:0003703!5.56e-16!1;UBERON:0001174!5.56e-16!1;UBERON:0004914!5.56e-16!1;UBERON:0002506!9.99e-16!1;UBERON:0001769!9.99e-16!1;UBERON:0000020!1.84e-15!23;UBERON:0002372!2.75e-15!1;UBERON:0001961!2.75e-15!1;UBERON:0001744!2.75e-15!1;UBERON:0001735!2.75e-15!1;UBERON:0001032!8.09e-15!24;UBERON:0004456!8.09e-15!24;UBERON:0005085!2.88e-12!29;UBERON:0001444!2.26e-10!48;UBERON:0000153!8.59e-10!129;UBERON:0007811!8.59e-10!129;UBERON:0000063!1.30e-08!97;UBERON:0000033!2.53e-08!123 | ||
|ontology_enrichment_uberon_v019=UBERON:0004913;8.10e-41;1!UBERON:0003703;8.10e-41;1!UBERON:0001174;8.10e-41;1!UBERON:0004914;8.10e-41;1!UBERON:0002506;2.21e-40;1!UBERON:0001769;2.21e-40;1!UBERON:0002114;1.31e-14;2!UBERON:0002394;2.66e-11;4!UBERON:0003928;2.66e-11;4!UBERON:0000488;3.42e-11;4!UBERON:0002108;2.63e-09;4!UBERON:0002203;6.78e-08;6!UBERON:0001768;6.78e-08;6!UBERON:0002200;6.78e-08;6!UBERON:0002294;5.22e-07;7!UBERON:0001173;5.22e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,6.62e-41,1;UBERON:0003703,6.62e-41,1;UBERON:0001174,6.62e-41,1;UBERON:0004914,6.62e-41,1;UBERON:0002506,3.30e-40,1;UBERON:0001769,3.30e-40,1;UBERON:0002114,1.22e-14,2;UBERON:0000488,3.79e-11,4;UBERON:0002108,2.53e-09,4;UBERON:0002394,5.54e-08,6;UBERON:0003928,5.54e-08,6;UBERON:0002203,7.25e-08,6;UBERON:0001768,7.25e-08,6;UBERON:0002200,7.25e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02940686179115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.13070500632772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49494626680975,1.67364554099733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.69640215542613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02940686179115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.13070500632772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49494626680975,1.67364554099733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.69640215542613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:98671855..98671858,+ | |short_description=p@chr3:98671855..98671858,+ | ||
}} | }} |
Latest revision as of 00:09, 30 July 2015
Short description: | p@chr3:98671855..98671858, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:98671855..98671858, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell (sensu Vertebrata) | 3.30e-40 | 1 |
iris pigment epithelial cell | 3.30e-40 | 1 |
glial cell (sensu Vertebrata) | 2.46e-10 | 15 |
glial cell | 2.46e-10 | 15 |
glioblast | 2.46e-10 | 15 |
glioblast (sensu Vertebrata) | 2.46e-10 | 15 |
neuron associated cell | 2.36e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 2.36e-09 | 17 |
epithelial cell of uterus | 5.92e-08 | 6 |
stromal cell of endometrium | 5.92e-08 | 6 |
neural cell | 7.24e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 6.62e-41 | 1 |
extrahepatic bile duct | 6.62e-41 | 1 |
common bile duct | 6.62e-41 | 1 |
duodenal papilla | 6.62e-41 | 1 |
iris epithelium | 3.30e-40 | 1 |
iris | 3.30e-40 | 1 |
duodenum | 1.22e-14 | 2 |
atypical epithelium | 3.79e-11 | 4 |
small intestine | 2.53e-09 | 4 |
bile duct | 5.54e-08 | 6 |
digestive system duct | 5.54e-08 | 6 |
vasculature of eye | 7.25e-08 | 6 |
uvea | 7.25e-08 | 6 |
vasculature of head | 7.25e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 3.11e-21 | 2 |
nervous system cancer | 3.36e-14 | 11 |
female reproductive endometrioid cancer | 5.92e-08 | 6 |
adenocarcinoma | 2.14e-07 | 25 |