FFCP PHASE1:Hg19::chr12:11422630..11422648,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5544 | |EntrezGene=5544 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9339 | |HGNC=9339 | ||
|TSSclassifier=strong | |||
|UniProt=Q04118,F5H7C1 | |UniProt=Q04118,F5H7C1 | ||
|association_with_transcript=0bp_to_ENST00000381842,ENST00000440870,ENST00000538488,NM_006249,uc001qzs.2_5end | |association_with_transcript=0bp_to_ENST00000381842,ENST00000440870,ENST00000538488,NM_006249,uc001qzs.2_5end | ||
|cluster_id=chr12:11422630..11422648,- | |||
|coexpression_cluster_id=C70 | |coexpression_cluster_id=C70 | ||
|description=CAGE_peak_1_at_PRB3_5end | |description=CAGE_peak_1_at_PRB3_5end | ||
|id=chr12:11422630..11422648,- | |id=chr12:11422630..11422648,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008801;2.63e-12;1!UBERON:0006298;4.53e-12;1!UBERON:0000358;1.01e-11;1!UBERON:0005754;1.47e-11;1 | |||
|ontology_enrichment_disease=DOID:178!4.60e-07!1;DOID:326!4.60e-07!1;DOID:3978!4.60e-07!1;DOID:3394!4.60e-07!1;DOID:5844!4.60e-07!1 | |ontology_enrichment_disease=DOID:178!4.60e-07!1;DOID:326!4.60e-07!1;DOID:3978!4.60e-07!1;DOID:3394!4.60e-07!1;DOID:5844!4.60e-07!1 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.35e-16!115;UBERON:0001829!1.22e-13!2;UBERON:0003127!1.56e-13!2;UBERON:0000078!8.46e-12!18;UBERON:0000166!4.98e-10!21;UBERON:0001044!5.15e-10!6;UBERON:0003293!5.15e-10!6;UBERON:0003294!5.15e-10!6;UBERON:0010047!5.15e-10!6;UBERON:0000167!5.15e-10!6;UBERON:0003408!5.96e-10!10;UBERON:0001004!8.76e-10!72;UBERON:0001042!1.19e-09!10;UBERON:0009145!1.19e-09!10;UBERON:0001723!5.62e-09!3;UBERON:0001033!5.62e-09!3;UBERON:0010056!5.62e-09!3;UBERON:0006562!8.78e-09!11;UBERON:0006947!9.78e-09!3;UBERON:0004054!9.78e-09!3;UBERON:0003135!1.01e-08!11;UBERON:0001831!9.91e-08!1;UBERON:0001567!9.91e-08!1;UBERON:0008801!9.91e-08!1;UBERON:0000065!1.05e-07!53;UBERON:0001736!1.36e-07!1;UBERON:0006298!1.36e-07!1;UBERON:0002171!1.85e-07!1;UBERON:0006518!1.85e-07!1;UBERON:0008949!1.85e-07!1;UBERON:0000101!1.85e-07!1;UBERON:0002167!1.85e-07!1;UBERON:0002372!1.97e-07!1;UBERON:0001961!1.97e-07!1;UBERON:0001744!1.97e-07!1;UBERON:0001735!1.97e-07!1;UBERON:0007029!2.09e-07!1;UBERON:0000165!2.27e-07!28;UBERON:0000930!2.27e-07!28;UBERON:0000998!2.52e-07!1;UBERON:0006868!2.52e-07!1;UBERON:0000989!3.21e-07!1;UBERON:0008811!3.21e-07!1;UBERON:0006258!3.21e-07!1;UBERON:0005876!3.21e-07!1;UBERON:0004874!3.21e-07!1;UBERON:0001154!3.41e-07!1;UBERON:0001153!3.41e-07!1;UBERON:0001301!5.19e-07!1;UBERON:0003112!5.50e-07!1;UBERON:0000032!5.50e-07!1;UBERON:0005253!5.50e-07!1;UBERON:0003128!5.50e-07!1;UBERON:0002241!5.50e-07!1;UBERON:0001703!5.50e-07!1;UBERON:0004761!5.50e-07!1;UBERON:0009617!5.50e-07!1;UBERON:0005904!9.38e-07!4 | |ontology_enrichment_uberon=UBERON:0007023!1.35e-16!115;UBERON:0001829!1.22e-13!2;UBERON:0003127!1.56e-13!2;UBERON:0000078!8.46e-12!18;UBERON:0000166!4.98e-10!21;UBERON:0001044!5.15e-10!6;UBERON:0003293!5.15e-10!6;UBERON:0003294!5.15e-10!6;UBERON:0010047!5.15e-10!6;UBERON:0000167!5.15e-10!6;UBERON:0003408!5.96e-10!10;UBERON:0001004!8.76e-10!72;UBERON:0001042!1.19e-09!10;UBERON:0009145!1.19e-09!10;UBERON:0001723!5.62e-09!3;UBERON:0001033!5.62e-09!3;UBERON:0010056!5.62e-09!3;UBERON:0006562!8.78e-09!11;UBERON:0006947!9.78e-09!3;UBERON:0004054!9.78e-09!3;UBERON:0003135!1.01e-08!11;UBERON:0001831!9.91e-08!1;UBERON:0001567!9.91e-08!1;UBERON:0008801!9.91e-08!1;UBERON:0000065!1.05e-07!53;UBERON:0001736!1.36e-07!1;UBERON:0006298!1.36e-07!1;UBERON:0002171!1.85e-07!1;UBERON:0006518!1.85e-07!1;UBERON:0008949!1.85e-07!1;UBERON:0000101!1.85e-07!1;UBERON:0002167!1.85e-07!1;UBERON:0002372!1.97e-07!1;UBERON:0001961!1.97e-07!1;UBERON:0001744!1.97e-07!1;UBERON:0001735!1.97e-07!1;UBERON:0007029!2.09e-07!1;UBERON:0000165!2.27e-07!28;UBERON:0000930!2.27e-07!28;UBERON:0000998!2.52e-07!1;UBERON:0006868!2.52e-07!1;UBERON:0000989!3.21e-07!1;UBERON:0008811!3.21e-07!1;UBERON:0006258!3.21e-07!1;UBERON:0005876!3.21e-07!1;UBERON:0004874!3.21e-07!1;UBERON:0001154!3.41e-07!1;UBERON:0001153!3.41e-07!1;UBERON:0001301!5.19e-07!1;UBERON:0003112!5.50e-07!1;UBERON:0000032!5.50e-07!1;UBERON:0005253!5.50e-07!1;UBERON:0003128!5.50e-07!1;UBERON:0002241!5.50e-07!1;UBERON:0001703!5.50e-07!1;UBERON:0004761!5.50e-07!1;UBERON:0009617!5.50e-07!1;UBERON:0005904!9.38e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0001829;1.34e-22;2!UBERON:0003127;2.06e-22;2!UBERON:0001044;8.59e-17;6!UBERON:0003293;8.59e-17;6!UBERON:0003294;8.59e-17;6!UBERON:0010047;8.59e-17;6!UBERON:0003408;8.59e-17;6!UBERON:0000167;8.59e-17;6!UBERON:0001831;2.63e-12;1!UBERON:0001567;2.63e-12;1!UBERON:0001736;4.53e-12;1!UBERON:0002171;7.76e-12;1!UBERON:0006518;7.76e-12;1!UBERON:0008949;7.76e-12;1!UBERON:0000101;7.76e-12;1!UBERON:0002167;7.76e-12;1!UBERON:0002372;8.64e-12;1!UBERON:0001961;8.64e-12;1!UBERON:0001744;8.64e-12;1!UBERON:0001042;8.64e-12;1!UBERON:0001735;8.64e-12;1!UBERON:0007029;1.01e-11;1!UBERON:0000998;1.47e-11;1!UBERON:0006868;1.47e-11;1!UBERON:0000165;1.90e-09;28!UBERON:0000161;3.03e-09;19!UBERON:0000166;3.03e-09;19!UBERON:0001041;1.69e-07;14!UBERON:0003126;4.74e-07;7!UBERON:0001005;4.74e-07;7!UBERON:0004089;8.93e-07;2!UBERON:0000341;9.96e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,1.34e-22,2;UBERON:0003127,2.06e-22,2;UBERON:0001044,8.59e-17,6;UBERON:0003293,8.59e-17,6;UBERON:0003294,8.59e-17,6;UBERON:0010047,8.59e-17,6;UBERON:0000167,8.59e-17,6;UBERON:0001831,2.63e-12,1;UBERON:0001567,2.63e-12,1;UBERON:0008801,2.63e-12,1;UBERON:0001736,4.53e-12,1;UBERON:0006298,4.53e-12,1;UBERON:0000166,4.67e-12,22;UBERON:0002171,7.76e-12,1;UBERON:0006518,7.76e-12,1;UBERON:0008949,7.76e-12,1;UBERON:0000101,7.76e-12,1;UBERON:0002167,7.76e-12,1;UBERON:0002372,8.64e-12,1;UBERON:0001961,8.64e-12,1;UBERON:0001744,8.64e-12,1;UBERON:0001735,8.64e-12,1;UBERON:0007029,9.61e-12,1;UBERON:0007023,1.29e-11,114;UBERON:0000998,1.32e-11,1;UBERON:0006868,1.32e-11,1;UBERON:0001004,1.72e-10,74;UBERON:0003408,2.66e-10,10;UBERON:0000165,4.06e-09,29;UBERON:0000930,4.06e-09,29;UBERON:0001041,9.57e-09,87;UBERON:0000161,2.58e-07,36;UBERON:0003126,4.74e-07,7;UBERON:0001005,4.74e-07,7;UBERON:0004089,8.93e-07,2;UBERON:0000341,9.96e-07,2 | |||
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|short_description=p1@PRB3 | |short_description=p1@PRB3 | ||
}} | }} |
Latest revision as of 13:26, 16 September 2015
Short description: | p1@PRB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRB3_5end |
Coexpression cluster: | C70_parotid_submaxillary_salivary_throat_trachea_aorta_tongue |
Association with transcript: | 0bp_to_ENST00000381842, ENST00000440870, ENST00000538488, NM_006249, uc001qzs.2_5end |
EntrezGene: | PRB3 |
HGNC: | 9339 |
UniProt: | Q04118F5H7C1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
major salivary gland | 1.34e-22 | 2 |
open tracheal system trachea | 2.06e-22 | 2 |
saliva-secreting gland | 8.59e-17 | 6 |
gland of oral region | 8.59e-17 | 6 |
gland of foregut | 8.59e-17 | 6 |
oral gland | 8.59e-17 | 6 |
oral cavity | 8.59e-17 | 6 |
parotid gland | 2.63e-12 | 1 |
cheek | 2.63e-12 | 1 |
parotid gland primordium | 2.63e-12 | 1 |
submandibular gland | 4.53e-12 | 1 |
submandibular gland primordium | 4.53e-12 | 1 |
oral opening | 4.67e-12 | 22 |
lower lobe of right lung | 7.76e-12 | 1 |
right lung lobe | 7.76e-12 | 1 |
lower lobe of lung | 7.76e-12 | 1 |
lobe of lung | 7.76e-12 | 1 |
right lung | 7.76e-12 | 1 |
tonsil | 8.64e-12 | 1 |
mucosa-associated lymphoid tissue | 8.64e-12 | 1 |
lymphoid tissue | 8.64e-12 | 1 |
tonsillar ring | 8.64e-12 | 1 |
surface | 9.61e-12 | 1 |
adult organism | 1.29e-11 | 114 |
seminal vesicle | 1.32e-11 | 1 |
seminal fluid secreting gland | 1.32e-11 | 1 |
respiratory system | 1.72e-10 | 74 |
gland of gut | 2.66e-10 | 10 |
mouth | 4.06e-09 | 29 |
stomodeum | 4.06e-09 | 29 |
foregut | 9.57e-09 | 87 |
orifice | 2.58e-07 | 36 |
trachea | 4.74e-07 | 7 |
respiratory airway | 4.74e-07 | 7 |
midface | 8.93e-07 | 2 |
throat | 9.96e-07 | 2 |