FFCP PHASE1:Hg19::chr11:2154002..2154014,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=78bp_to_BC021076_5end | |association_with_transcript=78bp_to_BC021076_5end | ||
|cluster_id=chr11:2154002..2154014,+ | |||
|coexpression_cluster_id=C172 | |coexpression_cluster_id=C172 | ||
|description=CAGE_peak_3_at_BC021076_5end | |description=CAGE_peak_3_at_BC021076_5end | ||
|id=chr11:2154002..2154014,+ | |id=chr11:2154002..2154014,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000349;6.29e-25;19!CL:0002577;3.99e-13;3!CL:0002575;5.28e-10;2!CL:0002536;1.41e-09;2!CL:0002549;1.05e-08;2!CL:0002537;4.14e-08;5!CL:0002541;6.86e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,4.78e-25,19;CL:0002577,2.34e-13,3;CL:0002575,5.29e-10,2;CL:0002536,1.41e-09,2;CL:0002549,9.33e-09,2;CL:0002537,4.24e-08,5;CL:0002541,6.78e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.84e-09;11!UBERON:0009497;1.10e-07;13 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!5.00e-17!14;UBERON:0000158!5.00e-17!14;UBERON:0000478!1.37e-11!24;UBERON:0003124!1.14e-10!7;UBERON:0000305!4.26e-08!7;UBERON:0001987!4.98e-07!4;UBERON:0004340!4.98e-07!4;UBERON:0004871!6.29e-07!8;UBERON:0004923!7.19e-07!57 | |ontology_enrichment_uberon=UBERON:0005631!5.00e-17!14;UBERON:0000158!5.00e-17!14;UBERON:0000478!1.37e-11!24;UBERON:0003124!1.14e-10!7;UBERON:0000305!4.26e-08!7;UBERON:0001987!4.98e-07!4;UBERON:0004340!4.98e-07!4;UBERON:0004871!6.29e-07!8;UBERON:0004923!7.19e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;5.02e-27;24!UBERON:0005631;3.44e-20;10!UBERON:0000158;3.44e-20;10!UBERON:0001987;1.30e-16;4!UBERON:0000305;5.68e-15;7!UBERON:0005629;1.05e-08;2!UBERON:0005358;1.05e-08;2!UBERON:0001886;1.05e-08;2!UBERON:0004086;1.05e-08;2!UBERON:0005282;1.05e-08;2!UBERON:0005281;1.05e-08;2!UBERON:0002107;3.97e-07;19!UBERON:0006925;3.97e-07;19!UBERON:0003124;6.86e-07;3!UBERON:0000920;6.86e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.33e-34,14;UBERON:0000158,2.33e-34,14;UBERON:0000478,3.97e-27,24;UBERON:0003124,2.30e-21,7;UBERON:0001987,8.03e-17,4;UBERON:0004340,8.03e-17,4;UBERON:0000305,5.87e-15,7;UBERON:0004871,4.74e-13,8;UBERON:0005629,9.33e-09,2;UBERON:0005358,9.33e-09,2;UBERON:0001886,9.33e-09,2;UBERON:0004086,9.33e-09,2;UBERON:0005282,9.33e-09,2;UBERON:0005281,9.33e-09,2;UBERON:0004923,7.75e-08,66;UBERON:0002107,3.75e-07,19;UBERON:0006925,3.75e-07,19;UBERON:0008836,3.75e-07,19;UBERON:0000920,6.78e-07,3 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.491467873003018,0,6.11635841964482,4.74780560811216,0.37129905888014,0.994192127183747,0,0,0,0,0.61560529038394,1.42800483870977,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0.486634870302636,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,0,0,0,0,0,1.96764655938411,1.15235184896,0,0,0,0,0,0,0,0,0,0,1.18800285728205,0.247266929278557,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.484938170456436,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,5.10804720835177,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,4.30459534900897,0,0,0,0,0.555530670951178,0,0,1.44331342025273,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30788020649984,0,0,0,0,0.797814349754612,0,0.257207374262142,0,0.532844358032199,1.28680194292333,11.3950537132203,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71768088406796,1.50051156317903,0,0.207970861530807,0.713715955188647,0.315404830067869,1.05427273493442,0,0,0,0,0,0,11.9438706052272,18.5297448857862,0,0,0,1.81876542867756,4.99306318531491,8.46692821323105,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,4.47179963489002,0,0,0.459257792658427,0.182091168006717,0.524497659837696,0,0.15403067420883,0,0,0,0,0,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0.261435451024901,0,0,0,0.618246069886334,0,0,0,0,0,0.193341436584244,0,0.15350367472613,0.137836572484531,0,0.145016693914229,0,6.14321045962488,0,0.192190067365106,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0.255897791311334,0.42793898803392,0,0,0,0.54907405947211,0.117812402345686,0,0,0,0.975267478179181,0,0,1.09199929126389,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.687743287091848,0,0,0,0,0,0,0,0,0,0.659006605437454,1.72202149068492,0,0.443430153536676,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29740072527842,3.26661148915902,4.91457123358771,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0.23056390438806,0,0,9.8890359516895,0.183195186803725,18.6562171606522,0,0,0,0,0,0,0,0,0,0,0.706765357169704,0,0,0,0,0,0,0,0.134802265961354,6.42062117839031,0,0,0,0,0,0,0.30607276163049,0.63186579628488,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,1.58186518546373,0,0,0,0,0,0,2.39771531498556,0,0,5.3194449337209,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458320848023367,0,0.199679000498991,0,0,1.5452198671947,0,0,2.44227865152393,1.81314888438566,2.96575592958414,3.34653437150146,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0.732761168390412,7.95041333473328,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0.504143392443436,0.207471757392654,0,0,0,0,0,0,0,0,1.5913297769302,0.150420656698515,0,0.781514011233092,0,0,0,0,0,0,0.0634158101939068,0.546974809018219,0,0,0,0,0,0,0.606965604236632,0.227662191351298,1.50794029276486,0,0,0,0,0,0,0.156986185701028,0,0.840816489941367,0,0,0,0.357382720883282,0,0,1.56472445072321,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0.243835849964539,0,0,4.6392577253528,0.485710993059139,0,1.59160620129095,0,0,0,0,0,0.437119121007915,0,0,0,0.392616934229891,0,0.8453114551668,0.169927114687817,0.0939839179798536,0.193373663920732,0,0,0,0,0,0,0,0.473314686579554,0,0.872701380680755,1.0580536810308,0,0,0.432626562123789,0,0,0,0,0,0,0,0.151557396436479,0,0,0.103432995861895,0,3.09483760902862,0,0.186224142887574,0,0.0636471582781649,0.808468755832877,0,10.6092323336437,0,0.0717222053926763,1.66330178273007,0.162806537221949,0,0,1.70667884002515,16.4248659682418,0.366724332548599,0.406896178315738,0,0.201273793591026,0 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|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.491467873003018,0,6.11635841964482,4.74780560811216,0.37129905888014,0.994192127183747,0,0,0,0,0.61560529038394,1.42800483870977,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0.486634870302636,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,0,0,0,0,0,1.96764655938411,1.15235184896,0,0,0,0,0,0,0,0,0,0,1.18800285728205,0.247266929278557,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.484938170456436,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,5.10804720835177,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,4.30459534900897,0,0,0,0,0.555530670951178,0,0,1.44331342025273,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30788020649984,0,0,0,0,0.797814349754612,0,0.257207374262142,0,0.532844358032199,1.28680194292333,11.3950537132203,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71768088406796,1.50051156317903,0,0.207970861530807,0.713715955188647,0.315404830067869,1.05427273493442,0,0,0,0,0,0,11.9438706052272,18.5297448857862,0,0,0,1.81876542867756,4.99306318531491,8.46692821323105,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,4.47179963489002,0,0,0.459257792658427,0.182091168006717,0.524497659837696,0,0.15403067420883,0,0,0,0,0,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0.261435451024901,0,0,0,0.618246069886334,0,0,0,0,0,0.193341436584244,0,0.15350367472613,0.137836572484531,0,0.145016693914229,0,6.14321045962488,0,0.192190067365106,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0.255897791311334,0.42793898803392,0,0,0,0.54907405947211,0.117812402345686,0,0,0,0.975267478179181,0,0,1.09199929126389,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.687743287091848,0,0,0,0,0,0,0,0,0,0.659006605437454,1.72202149068492,0,0.443430153536676,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29740072527842,3.26661148915902,4.91457123358771,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0.23056390438806,0,0,9.8890359516895,0.183195186803725,18.6562171606522,0,0,0,0,0,0,0,0,0,0,0.706765357169704,0,0,0,0,0,0,0,0.134802265961354,6.42062117839031,0,0,0,0,0,0,0.30607276163049,0.63186579628488,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,1.58186518546373,0,0,0,0,0,0,2.39771531498556,0,0,5.3194449337209,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458320848023367,0,0.199679000498991,0,0,1.5452198671947,0,0,2.44227865152393,1.81314888438566,2.96575592958414,3.34653437150146,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0.732761168390412,7.95041333473328,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0.504143392443436,0.207471757392654,0,0,0,0,0,0,0,0,1.5913297769302,0.150420656698515,0,0.781514011233092,0,0,0,0,0,0,0.0634158101939068,0.546974809018219,0,0,0,0,0,0,0.606965604236632,0.227662191351298,1.50794029276486,0,0,0,0,0,0,0.156986185701028,0,0.840816489941367,0,0,0,0.357382720883282,0,0,1.56472445072321,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0.243835849964539,0,0,4.6392577253528,0.485710993059139,0,1.59160620129095,0,0,0,0,0,0.437119121007915,0,0,0,0.392616934229891,0,0.8453114551668,0.169927114687817,0.0939839179798536,0.193373663920732,0,0,0,0,0,0,0,0.473314686579554,0,0.872701380680755,1.0580536810308,0,0,0.432626562123789,0,0,0,0,0,0,0,0.151557396436479,0,0,0.103432995861895,0,3.09483760902862,0,0.186224142887574,0,0.0636471582781649,0.808468755832877,0,10.6092323336437,0,0.0717222053926763,1.66330178273007,0.162806537221949,0,0,1.70667884002515,16.4248659682418,0.366724332548599,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p3@BC021076 | |short_description=p3@BC021076 | ||
}} | }} |
Latest revision as of 21:01, 23 July 2015
Short description: | p3@BC021076 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_BC021076_5end |
Coexpression cluster: | C172_chorionic_skeletal_tongue_amniotic_liver_gastrointestinal_Pericytes |
Association with transcript: | 78bp_to_BC021076_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 4.78e-25 | 19 |
placental epithelial cell | 2.34e-13 | 3 |
central nervous system pericyte | 5.29e-10 | 2 |
amniotic epithelial cell | 1.41e-09 | 2 |
fibroblast of choroid plexus | 9.33e-09 | 2 |
amnion mesenchymal stem cell | 4.24e-08 | 5 |
chorionic membrane mesenchymal stem cell | 6.78e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.33e-34 | 14 |
membranous layer | 2.33e-34 | 14 |
extraembryonic structure | 3.97e-27 | 24 |
chorion | 2.30e-21 | 7 |
placenta | 8.03e-17 | 4 |
allantois | 8.03e-17 | 4 |
amnion | 5.87e-15 | 7 |
somatic layer of lateral plate mesoderm | 4.74e-13 | 8 |
vascular plexus | 9.33e-09 | 2 |
ventricle of nervous system | 9.33e-09 | 2 |
choroid plexus | 9.33e-09 | 2 |
brain ventricle | 9.33e-09 | 2 |
ventricular system of brain | 9.33e-09 | 2 |
ventricular system of central nervous system | 9.33e-09 | 2 |
organ component layer | 7.75e-08 | 66 |
liver | 3.75e-07 | 19 |
digestive gland | 3.75e-07 | 19 |
liver bud | 3.75e-07 | 19 |
egg chorion | 6.78e-07 | 3 |