FFCP PHASE1:Hg19::chr1:201252623..201252640,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:201252623..201252640,+
|short_description=p1@PKP1
|description=CAGE_peak_1_at_PKP1_5end
|association_with_transcript=43bp_to_ENST00000263946,ENST0000036732...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5317 | |EntrezGene=5317 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9023 | |HGNC=9023 | ||
|TSSclassifier=strong | |||
|UniProt=Q13835 | |UniProt=Q13835 | ||
|association_with_transcript=43bp_to_ENST00000263946,ENST00000367324,NM_000299,NM_001005337,uc001gwd.2,uc001gwe.2,uc009wzm.2_5end | |||
|cluster_id=chr1:201252623..201252640,+ | |||
|coexpression_cluster_id=C2548 | |||
|description=CAGE_peak_1_at_PKP1_5end | |||
|id=chr1:201252623..201252640,+ | |||
|ontology_enrichment_celltype=CL:0002076!2.33e-09!43;CL:0002159!1.30e-07!13;CL:0002368!2.95e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;8.27e-11;42!CL:0002159;1.42e-09;14!CL:0002368;8.76e-09;13!CL:0002251;2.54e-08;20!CL:0000622;1.22e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,4.99e-14,42;CL:0000066,1.01e-11,253;CL:0000223,3.08e-10,58;CL:0002159,1.23e-09,14;CL:0002368,8.76e-09,13;CL:0002251,2.52e-08,20;CL:0000622,1.22e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!9.16e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.30e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.26e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000161!1.70e-10!35;UBERON:0000166!1.30e-09!21;UBERON:0007023!1.72e-09!115;UBERON:0000165!3.27e-09!28;UBERON:0000930!3.27e-09!28;UBERON:0003102!1.19e-08!95;UBERON:0001004!4.27e-08!72;UBERON:0004119!8.61e-08!169;UBERON:0000925!8.61e-08!169;UBERON:0006595!8.61e-08!169;UBERON:0000064!2.20e-07!219;UBERON:0000475!2.40e-07!365;UBERON:0000481!3.62e-07!347;UBERON:0001444!4.62e-07!48;UBERON:0000468!4.68e-07!659;UBERON:0001008!6.27e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0000165;4.59e-11;28!UBERON:0000161;9.55e-10;19!UBERON:0000166;9.55e-10;19!UBERON:0001044;3.19e-07;6!UBERON:0003293;3.19e-07;6!UBERON:0003294;3.19e-07;6!UBERON:0010047;3.19e-07;6!UBERON:0003408;3.19e-07;6!UBERON:0000167;3.19e-07;6!UBERON:0001041;7.26e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.26e-12,160;UBERON:0000925,4.26e-12,160;UBERON:0006595,4.26e-12,160;UBERON:0000161,7.09e-12,36;UBERON:0001004,1.78e-11,74;UBERON:0000166,5.25e-11,22;UBERON:0000153,9.00e-11,62;UBERON:0007811,9.00e-11,62;UBERON:0003102,1.69e-10,99;UBERON:0000165,2.11e-10,29;UBERON:0000930,2.11e-10,29;UBERON:0001008,3.32e-10,48;UBERON:0006554,1.22e-09,47;UBERON:0000033,4.55e-09,56;UBERON:0001444,1.74e-08,49;UBERON:0001007,3.25e-07,145;UBERON:0001555,3.25e-07,145;UBERON:0007026,3.25e-07,145;UBERON:0001044,3.29e-07,6;UBERON:0003293,3.29e-07,6;UBERON:0003294,3.29e-07,6;UBERON:0010047,3.29e-07,6;UBERON:0000167,3.29e-07,6;UBERON:0005631,9.60e-07,14;UBERON:0000158,9.60e-07,14 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0.982935746006035,1.39560233594486,24.2469923064491,11.605747042052,0,0,0,0,0,0,0.246242116153576,0,0.626909442956176,0,0,0.125542639594803,0,0,0,0,0,1.85779347979291,137.913183671839,181.024757185728,119.800299294039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.8753746343018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,1.50401373190767,0.144846518960824,15.1104329939709,28.2248224775529,0,0,0,2.03017567021455,363.202402427665,529.480184296165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732186172644509,0,0,0,0,0,0,0,0,0,0,415.161537639693,0.993943903390637,0,0,0.286836620748814,0.354668382198357,1.12135520028461,0,0,0,0,0,0,0,0,0,2.85235910772225,0.149448680551801,1.40921398372518,1.94247533241758,1.54495887372473,0.408308342509787,1.10550885580591,0.103325781175765,0,0,0,0,0.841680569770331,2.00189631795143,0,1.31693286264251,0,0,0,0.358779271377724,0.213557388818567,0,0,0.206105058476878,0,0,0.168776332241266,0.194874010322397,0,0,0,0,0.201504196455281,0,124.266728584,141.009744345462,100.094803790762,0.121973706129595,0.132529768321485,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,4.20725321410337,0,1.47008711385542,0,0,0,0.882926198829301,0,0,260.656927845486,156.238437028091,138.830510900462,214.342250541996,0,0,0,0.579652024875384,0,0.866198686566443,0,0.190254152234598,15.0138835612262,14.5942647556128,0,0,0,67.4883604704794,79.4555466380606,85.490383637159,83.0207505455404,64.2301004115856,108.88068088292,0,0,1.03664057770386,3.31475892859011,1.13618190083742,0.952468414382536,0,1.17217447210047,8.55362230113526,0,0,0.571652865261156,0.112131084345361,0,0.1466765716419,0,7.15312891703765,0,0,0,1.02882949704857,1.41849132023278,1.8649552531127,0,0,0,0,0,0.791951872933429,0,0,0,0,0,0,5.27174682081482,10.3375742250703,4.27910715122155,1.44781306667579,0.61642896765115,1.07436577943937,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0.178428988797162,0,0,0,0,1.03473071292505,1.32845119707087,2.58116835958384,0,0.979005787313703,0,0,0,0,37.8909464307824,11.6504807657348,21.1673205330776,0,0.153461973288062,0,0,0,0.160853921143607,0,0,0,0.164254312027618,0,0.116210378459959,0,83.4106916461665,162.522945471857,0,0,0.524497659837696,2.70719767744447,3.38867483259425,0.784349769176855,1.46139224653261,2.00548094896464,0,0,1.51141141271498,1.54227252690289,1.08378575017541,0,1.01950509218015,1.66215201785745,1.11937377361089,0.219259876645935,0.261435451024901,11.5402556302375,7.54433685109323,4.22991913063594,3.709476419318,0,0,187.210565386752,213.869820946015,0,1.16004861950546,0.154048617114644,0,0.827019434907183,0,0.145016693914229,0.426133137080504,13.1767412757171,107.600479899997,170.472589752849,87.9251589087685,183.601372252823,0,0,0,0,0,0,0,0.286249773483982,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405820753925408,2.16876448669825,0.281695602532241,0,0,0.35667105148125,0,0,0,0,0,102.47655005267,95.1829231260818,108.890984861323,3.29503302718727,84.8095584162323,235.860065934676,374.255049584954,71.2142540641574,0,0,0,0,0,0,0,0,0,0,86.7442364572852,0,0,1.28055318027145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,35.4549793837983,0,0,0,175.71594076694,35.338797019084,197.811492151905,0,0,0,0,0.211125408127993,2.98871982376605,0.552567831062295,0,0,0,0.311039587661807,0.539210106883961,0,0,4.14302303675121,0,0,0,0.185536196323703,0,12.5005325320912,0,25.3749851402178,67.9346886264433,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0,0,0.438770794307945,0,296.554304080589,71.4098398915237,0,0,0,0,33.8141229315835,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12298154808014,0.611030144933625,0,0,0,0,4.01288823649394,0,0,20.3491203689373,0,9.47002566838537,0,0,1.45329133145522,0.150323419414493,0,0,0,0,0,0,4.16024019039416,0,128.076063420592,0.609414446062818,7.33852006616527,0,0,0,0,271.666235184063,0,36.3828992656657,0,0,0.50648636764703,4.88878456837007,0,0.213452994739353,2.39771531498556,0,0,0,0,17.2711024435951,168.285540716392,0,0,0,0,0,0.136905378891993,0,0,0,2.23425921017803,0.229160424011684,1.43574604915363,1.19807400299395,0,0.223171457441873,0.671834724867263,0,0,0,0,0,0,0,0,0,0.160753148465019,0.137539436597234,0,35.7708487566886,595.827505009621,0.546746009922222,270.024923517409,0.157611414598396,0.419636705079985,0,0,45.1000713700696,0,0.662091970365432,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,2.11444506695002,6.83439440433246,1.10043013569766,6.21358583020793,0.496166021811951,0,0,155.116925638154,7.07223144380316,15.2920835353847,3.06345576763462,4.59021682993726,0,0.886068179966986,0.244052529803926,0.250381861413,0,0,0.0620964029413835,0,0,0,0,0,0,1.59413131471908,0.149254802886874,0,0,0.189403005275089,0.251567901752575,0.889811221596536,0,0,0,0,0.159296767163702,0,0,0,0,0.521745061811734,0.150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| ||
|short_description=p1@PKP1 | |||
}} | }} |
Latest revision as of 17:13, 19 September 2015
Short description: | p1@PKP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PKP1_5end |
Coexpression cluster: | C2548_salivary_immature_tongue_esophagus_amniotic_cervical_Corneal |
Association with transcript: | 43bp_to_ENST00000263946, ENST00000367324, NM_000299, NM_001005337, uc001gwd.2, uc001gwe.2, uc009wzm.2_5end |
EntrezGene: | PKP1 |
HGNC: | 9023 |
UniProt: | Q13835 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 4.99e-14 | 42 |
epithelial cell | 1.01e-11 | 253 |
endodermal cell | 3.08e-10 | 58 |
general ecto-epithelial cell | 1.23e-09 | 14 |
respiratory epithelial cell | 8.76e-09 | 13 |
epithelial cell of alimentary canal | 2.52e-08 | 20 |
acinar cell | 1.22e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.26e-12 | 160 |
endoderm | 4.26e-12 | 160 |
presumptive endoderm | 4.26e-12 | 160 |
orifice | 7.09e-12 | 36 |
respiratory system | 1.78e-11 | 74 |
oral opening | 5.25e-11 | 22 |
anterior region of body | 9.00e-11 | 62 |
craniocervical region | 9.00e-11 | 62 |
surface structure | 1.69e-10 | 99 |
mouth | 2.11e-10 | 29 |
stomodeum | 2.11e-10 | 29 |
renal system | 3.32e-10 | 48 |
urinary system structure | 1.22e-09 | 47 |
head | 4.55e-09 | 56 |
subdivision of head | 1.74e-08 | 49 |
digestive system | 3.25e-07 | 145 |
digestive tract | 3.25e-07 | 145 |
primitive gut | 3.25e-07 | 145 |
saliva-secreting gland | 3.29e-07 | 6 |
gland of oral region | 3.29e-07 | 6 |
gland of foregut | 3.29e-07 | 6 |
oral gland | 3.29e-07 | 6 |
oral cavity | 3.29e-07 | 6 |
extraembryonic membrane | 9.60e-07 | 14 |
membranous layer | 9.60e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.26e-07 | 14 |