FFCP PHASE1:Hg19::chr1:202183200..202183217,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:202183200..202183217,+
|short_description=p3@LGR6
|description=CAGE_peak_3_at_LGR6_5end
|association_with_transcript=-65bp_to_ENST00000439764,NM_001017404,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=59352 | |EntrezGene=59352 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19719 | |HGNC=19719 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HBX8 | |UniProt=Q9HBX8 | ||
|association_with_transcript=-65bp_to_ENST00000439764,NM_001017404,uc001gxw.2_5end | |||
|cluster_id=chr1:202183200..202183217,+ | |||
|description=CAGE_peak_3_at_LGR6_5end | |||
|id=chr1:202183200..202183217,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.21e-08!254 | |||
|ontology_enrichment_celltype_v019=CL:0002577;2.17e-17;3!CL:0000349;2.89e-10;19!CL:0002178;2.04e-08;3!CL:0002166;6.05e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,2.12e-17,3;CL:0000349,2.89e-10,19;CL:0002178,2.28e-08,3;CL:0002166,5.07e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006242;3.31e-07;1 | |||
|ontology_enrichment_disease=DOID:305!5.60e-10!106;DOID:299!9.04e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.73e-07;25!DOID:0050619;5.41e-07;1!DOID:1357;5.41e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:299,1.67e-07,25;DOID:305,3.44e-07,106;DOID:0050619,5.57e-07,1;DOID:1357,5.57e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.54e-11!115;UBERON:0005631!1.87e-10!14;UBERON:0000158!1.87e-10!14;UBERON:0004119!1.46e-09!169;UBERON:0000925!1.46e-09!169;UBERON:0006595!1.46e-09!169;UBERON:0000062!9.72e-08!511;UBERON:0001987!3.40e-07!4;UBERON:0004340!3.40e-07!4;UBERON:0003100!3.59e-07!41;UBERON:0001007!9.51e-07!155;UBERON:0001555!9.51e-07!155;UBERON:0007026!9.51e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;3.56e-13;4!UBERON:0002110;1.49e-08;3!UBERON:0000478;5.37e-08;24!UBERON:0002294;8.49e-08;7!UBERON:0001173;8.49e-08;7!UBERON:0007029;4.55e-07;1!UBERON:0001764;5.41e-07;1!UBERON:0001825;5.41e-07;1!UBERON:0002146;7.18e-07;1!UBERON:0004913;7.18e-07;1!UBERON:0003703;7.18e-07;1!UBERON:0005623;7.18e-07;1!UBERON:0001174;7.18e-07;1!UBERON:0004914;7.18e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.77e-14,14;UBERON:0000158,3.77e-14,14;UBERON:0001987,3.49e-13,4;UBERON:0004340,3.49e-13,4;UBERON:0003124,4.64e-13,7;UBERON:0002110,1.58e-08,3;UBERON:0006242,1.58e-08,3;UBERON:0000478,5.37e-08,24;UBERON:0007029,4.18e-07,1;UBERON:0001764,5.57e-07,1;UBERON:0001825,5.57e-07,1;UBERON:0002146,6.24e-07,1;UBERON:0005623,6.24e-07,1;UBERON:0004913,6.60e-07,1;UBERON:0003703,6.60e-07,1;UBERON:0001174,6.60e-07,1;UBERON:0004914,6.60e-07,1;UBERON:0001301,9.79e-07,1 | |||
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| ||
|short_description=p3@LGR6 | |||
}} | }} |
Latest revision as of 20:19, 19 September 2015
Short description: | p3@LGR6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LGR6_5end |
Coexpression cluster: | NA |
Association with transcript: | -65bp_to_ENST00000439764, NM_001017404, uc001gxw.2_5end |
EntrezGene: | LGR6 |
HGNC: | 19719 |
UniProt: | Q9HBX8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 2.12e-17 | 3 |
extraembryonic cell | 2.89e-10 | 19 |
epithelial cell of stomach | 2.28e-08 | 3 |
epithelial cell of Malassez | 5.07e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.77e-14 | 14 |
membranous layer | 3.77e-14 | 14 |
placenta | 3.49e-13 | 4 |
allantois | 3.49e-13 | 4 |
chorion | 4.64e-13 | 7 |
gallbladder | 1.58e-08 | 3 |
gall bladder primordium | 1.58e-08 | 3 |
extraembryonic structure | 5.37e-08 | 24 |
surface | 4.18e-07 | 1 |
maxillary sinus | 5.57e-07 | 1 |
paranasal sinus | 5.57e-07 | 1 |
pulmonary valve | 6.24e-07 | 1 |
semi-lunar valve | 6.24e-07 | 1 |
hepatopancreatic ampulla | 6.60e-07 | 1 |
extrahepatic bile duct | 6.60e-07 | 1 |
common bile duct | 6.60e-07 | 1 |
duodenal papilla | 6.60e-07 | 1 |
epididymis | 9.79e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 1.67e-07 | 25 |
carcinoma | 3.44e-07 | 106 |
paranasal sinus cancer | 5.57e-07 | 1 |
maxillary sinus cancer | 5.57e-07 | 1 |