FFCP PHASE1:Hg19::chr4:95174454..95174465,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56916 | |EntrezGene=56916 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18398 | |HGNC=18398 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z799 | |UniProt=B7Z799 | ||
|association_with_transcript=9bp_to_ENST00000509418,uc011cdw.1_5end | |association_with_transcript=9bp_to_ENST00000509418,uc011cdw.1_5end | ||
|cluster_id=chr4:95174454..95174465,+ | |||
|description=CAGE_peak_8_at_SMARCAD1_5end | |description=CAGE_peak_8_at_SMARCAD1_5end | ||
|id=chr4:95174454..95174465,+ | |id=chr4:95174454..95174465,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009143;2.73e-29;1!UBERON:0008814;2.21e-15;2!UBERON:0010056;2.21e-15;2!UBERON:0010122;2.21e-15;2 | |ontology_enrichment_development_v019=UBERON:0009143;2.73e-29;1!UBERON:0008814;2.21e-15;2!UBERON:0010056;2.21e-15;2!UBERON:0010122;2.21e-15;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3151;1.15e-29;1!DOID:3149;1.15e-29;1!DOID:3451;1.43e-15;2!DOID:4159;1.43e-15;2!DOID:0060122;1.43e-15;2 | |ontology_enrichment_disease_v019=DOID:3151;1.15e-29;1!DOID:3149;1.15e-29;1!DOID:3451;1.43e-15;2!DOID:4159;1.43e-15;2!DOID:0060122;1.43e-15;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3151,9.99e-30,1;DOID:3149,9.99e-30,1;DOID:3451,1.33e-15,2;DOID:4159,1.33e-15,2;DOID:0060122,1.33e-15,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.00e-33!57;UBERON:0005068!1.00e-33!57;UBERON:0006241!1.00e-33!57;UBERON:0007135!1.00e-33!57;UBERON:0001893!8.92e-33!34;UBERON:0001869!4.33e-31!32;UBERON:0002791!4.20e-30!33;UBERON:0002780!1.05e-29!41;UBERON:0001890!1.05e-29!41;UBERON:0006240!1.05e-29!41;UBERON:0003080!6.65e-29!42;UBERON:0007023!5.63e-28!115;UBERON:0002619!8.57e-27!22;UBERON:0002616!1.17e-26!59;UBERON:0002020!1.19e-25!34;UBERON:0003528!1.19e-25!34;UBERON:0001017!1.21e-25!82;UBERON:0001950!6.19e-25!20;UBERON:0005743!3.46e-24!86;UBERON:0000955!6.74e-24!69;UBERON:0006238!6.74e-24!69;UBERON:0000956!2.33e-23!25;UBERON:0000203!2.33e-23!25;UBERON:0002346!3.38e-23!90;UBERON:0003075!1.74e-22!86;UBERON:0007284!1.74e-22!86;UBERON:0000073!2.37e-21!94;UBERON:0001016!2.37e-21!94;UBERON:0000153!3.46e-20!129;UBERON:0007811!3.46e-20!129;UBERON:0000924!9.47e-20!173;UBERON:0006601!9.47e-20!173;UBERON:0004121!5.54e-19!169;UBERON:0003056!1.29e-18!61;UBERON:0000033!3.00e-18!123;UBERON:0000200!1.18e-16!6;UBERON:0002771!2.76e-13!3;UBERON:0000064!3.99e-13!219;UBERON:0001871!6.20e-13!7;UBERON:0000475!4.49e-10!365;UBERON:0000369!1.33e-09!4;UBERON:0002435!1.33e-09!4;UBERON:0000204!1.33e-09!4;UBERON:0010082!1.33e-09!4;UBERON:0000341!7.85e-09!2;UBERON:0000349!4.50e-08!5;UBERON:0004111!9.58e-08!241;UBERON:0000025!1.52e-07!194;UBERON:0000062!1.52e-07!511;UBERON:0001872!2.01e-07!5;UBERON:0002420!2.13e-07!9;UBERON:0007245!2.13e-07!9;UBERON:0010009!2.13e-07!9;UBERON:0010011!2.13e-07!9;UBERON:0000454!2.13e-07!9 | |ontology_enrichment_uberon=UBERON:0001049!1.00e-33!57;UBERON:0005068!1.00e-33!57;UBERON:0006241!1.00e-33!57;UBERON:0007135!1.00e-33!57;UBERON:0001893!8.92e-33!34;UBERON:0001869!4.33e-31!32;UBERON:0002791!4.20e-30!33;UBERON:0002780!1.05e-29!41;UBERON:0001890!1.05e-29!41;UBERON:0006240!1.05e-29!41;UBERON:0003080!6.65e-29!42;UBERON:0007023!5.63e-28!115;UBERON:0002619!8.57e-27!22;UBERON:0002616!1.17e-26!59;UBERON:0002020!1.19e-25!34;UBERON:0003528!1.19e-25!34;UBERON:0001017!1.21e-25!82;UBERON:0001950!6.19e-25!20;UBERON:0005743!3.46e-24!86;UBERON:0000955!6.74e-24!69;UBERON:0006238!6.74e-24!69;UBERON:0000956!2.33e-23!25;UBERON:0000203!2.33e-23!25;UBERON:0002346!3.38e-23!90;UBERON:0003075!1.74e-22!86;UBERON:0007284!1.74e-22!86;UBERON:0000073!2.37e-21!94;UBERON:0001016!2.37e-21!94;UBERON:0000153!3.46e-20!129;UBERON:0007811!3.46e-20!129;UBERON:0000924!9.47e-20!173;UBERON:0006601!9.47e-20!173;UBERON:0004121!5.54e-19!169;UBERON:0003056!1.29e-18!61;UBERON:0000033!3.00e-18!123;UBERON:0000200!1.18e-16!6;UBERON:0002771!2.76e-13!3;UBERON:0000064!3.99e-13!219;UBERON:0001871!6.20e-13!7;UBERON:0000475!4.49e-10!365;UBERON:0000369!1.33e-09!4;UBERON:0002435!1.33e-09!4;UBERON:0000204!1.33e-09!4;UBERON:0010082!1.33e-09!4;UBERON:0000341!7.85e-09!2;UBERON:0000349!4.50e-08!5;UBERON:0004111!9.58e-08!241;UBERON:0000025!1.52e-07!194;UBERON:0000062!1.52e-07!511;UBERON:0001872!2.01e-07!5;UBERON:0002420!2.13e-07!9;UBERON:0007245!2.13e-07!9;UBERON:0010009!2.13e-07!9;UBERON:0010011!2.13e-07!9;UBERON:0000454!2.13e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0007029;7.48e-30;1!UBERON:0000014;1.91e-29;4!UBERON:0001954;1.43e-15;2!UBERON:0003022;1.43e-15;2!UBERON:0002421;1.43e-15;2!UBERON:0002600;1.43e-15;2!UBERON:0001873;2.21e-15;2!UBERON:0002702;2.21e-15;2!UBERON:0001043;1.04e-10;3!UBERON:0001870;1.04e-10;3!UBERON:0001723;1.04e-10;3!UBERON:0001033;1.04e-10;3!UBERON:0005383;1.04e-10;3!UBERON:0005382;1.04e-10;3!UBERON:0000369;2.35e-08;4!UBERON:0002435;2.35e-08;4!UBERON:0000204;2.35e-08;4!UBERON:0002791;5.06e-08;32!UBERON:0001869;5.06e-08;32!UBERON:0002780;2.15e-07;41!UBERON:0001890;2.15e-07;41!UBERON:0000349;5.23e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0007029;7.48e-30;1!UBERON:0000014;1.91e-29;4!UBERON:0001954;1.43e-15;2!UBERON:0003022;1.43e-15;2!UBERON:0002421;1.43e-15;2!UBERON:0002600;1.43e-15;2!UBERON:0001873;2.21e-15;2!UBERON:0002702;2.21e-15;2!UBERON:0001043;1.04e-10;3!UBERON:0001870;1.04e-10;3!UBERON:0001723;1.04e-10;3!UBERON:0001033;1.04e-10;3!UBERON:0005383;1.04e-10;3!UBERON:0005382;1.04e-10;3!UBERON:0000369;2.35e-08;4!UBERON:0002435;2.35e-08;4!UBERON:0000204;2.35e-08;4!UBERON:0002791;5.06e-08;32!UBERON:0001869;5.06e-08;32!UBERON:0002780;2.15e-07;41!UBERON:0001890;2.15e-07;41!UBERON:0000349;5.23e-07;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007029,7.48e-30,1;UBERON:0000014,1.78e-29,4;UBERON:0001954,1.54e-15,2;UBERON:0003022,1.54e-15,2;UBERON:0002421,1.54e-15,2;UBERON:0002600,1.54e-15,2;UBERON:0001873,1.78e-15,2;UBERON:0010122,1.78e-15,2;UBERON:0002702,2.74e-15,2;UBERON:0005383,8.99e-11,3;UBERON:0005382,8.99e-11,3;UBERON:0001723,9.90e-11,3;UBERON:0001033,9.90e-11,3;UBERON:0010056,9.90e-11,3;UBERON:0001043,1.09e-10,3;UBERON:0009143,1.09e-10,3;UBERON:0001870,1.20e-10,3;UBERON:0002791,2.06e-08,32;UBERON:0001869,2.06e-08,32;UBERON:0000369,2.11e-08,4;UBERON:0002435,2.11e-08,4;UBERON:0000204,2.11e-08,4;UBERON:0010082,2.11e-08,4;UBERON:0003528,5.73e-08,34;UBERON:0002020,5.73e-08,34;UBERON:0001893,5.73e-08,34;UBERON:0000349,5.38e-07,5;UBERON:0002780,9.61e-07,41;UBERON:0001890,9.61e-07,41;UBERON:0003080,9.61e-07,41;UBERON:0006240,9.61e-07,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0.100528972411631,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.844016498463076,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,1.68835014075571,0,0,0,0.219385397153973,0,0.697118721393016,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35784623083787,0,0.677942222341597,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0,0,0,2.04305109167363,0,0,0,0,0,0.303747783290123,2.68347750079413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,1.1267183763585,0,0.665574309221114,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0.192687675289379,0,0.319267718114302,0,0,0.0691572524642179,0,0,0,0.471878893390961,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0.620060389503552,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.88568794447312,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0.981542335574726,0.297046400327086,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0.872701380680755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.213233981900981,0.23806443146374,0,0,0,0,0,1.52401723527873,0.684466602170562,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0.100528972411631,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.844016498463076,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,1.68835014075571,0,0,0,0.219385397153973,0,0.697118721393016,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35784623083787,0,0.677942222341597,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0,0,0,2.04305109167363,0,0,0,0,0,0.303747783290123,2.68347750079413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,1.1267183763585,0,0.665574309221114,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0.192687675289379,0,0.319267718114302,0,0,0.0691572524642179,0,0,0,0.471878893390961,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0.620060389503552,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.88568794447312,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0.981542335574726,0.297046400327086,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0.872701380680755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.213233981900981,0.23806443146374,0,0,0,0,0,1.52401723527873,0.684466602170562,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@SMARCAD1 | |short_description=p8@SMARCAD1 | ||
}} | }} |
Latest revision as of 09:57, 19 September 2015
Short description: | p8@SMARCAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SMARCAD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 9bp_to_ENST00000509418, uc011cdw.1_5end |
EntrezGene: | SMARCAD1 |
HGNC: | 18398 |
UniProt: | B7Z799 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
surface | 7.48e-30 | 1 |
zone of skin | 1.78e-29 | 4 |
Ammon's horn | 1.54e-15 | 2 |
lobe parts of cerebral cortex | 1.54e-15 | 2 |
hippocampal formation | 1.54e-15 | 2 |
limbic lobe | 1.54e-15 | 2 |
caudate nucleus | 1.78e-15 | 2 |
future caudate nucleus | 1.78e-15 | 2 |
middle frontal gyrus | 2.74e-15 | 2 |
caudate-putamen | 8.99e-11 | 3 |
dorsal striatum | 8.99e-11 | 3 |
tongue | 9.90e-11 | 3 |
gustatory system | 9.90e-11 | 3 |
future tongue | 9.90e-11 | 3 |
esophagus | 1.09e-10 | 3 |
esophageal region | 1.09e-10 | 3 |
frontal cortex | 1.20e-10 | 3 |
regional part of telencephalon | 2.06e-08 | 32 |
cerebral hemisphere | 2.06e-08 | 32 |
corpus striatum | 2.11e-08 | 4 |
striatum | 2.11e-08 | 4 |
ventral part of telencephalon | 2.11e-08 | 4 |
future corpus striatum | 2.11e-08 | 4 |
brain grey matter | 5.73e-08 | 34 |
gray matter | 5.73e-08 | 34 |
telencephalon | 5.73e-08 | 34 |
limbic system | 5.38e-07 | 5 |
regional part of forebrain | 9.61e-07 | 41 |
forebrain | 9.61e-07 | 41 |
anterior neural tube | 9.61e-07 | 41 |
future forebrain | 9.61e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 9.99e-30 | 1 |
keratoacanthoma | 9.99e-30 | 1 |
skin carcinoma | 1.33e-15 | 2 |
skin cancer | 1.33e-15 | 2 |
integumentary system cancer | 1.33e-15 | 2 |