FFCP PHASE1:Hg19::chr1:22109531..22109558,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:22109531..22109558,-
|short_description=p5@USP48
|description=CAGE_peak_5_at_USP48_5end
|association_with_transcript=-47bp_to_ENST00000529637_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84196 | |EntrezGene=84196 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18533 | |HGNC=18533 | ||
|TSSclassifier=strong | |||
|UniProt=B7ZKS7 | |UniProt=B7ZKS7 | ||
|association_with_transcript=-47bp_to_ENST00000529637_5end | |||
|cluster_id=chr1:22109531..22109558,- | |||
|description=CAGE_peak_5_at_USP48_5end | |||
|id=chr1:22109531..22109558,- | |||
|ontology_enrichment_celltype=CL:0000066!5.12e-13!254;CL:0002076!2.04e-08!43;CL:0000223!3.36e-08!59;CL:0002251!5.96e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002251;2.68e-09;20!CL:0002076;3.02e-09;42!CL:0002322;1.11e-07;5!CL:0000039;4.03e-07;7!CL:0000586;4.03e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.02e-11,253;CL:0002076,3.92e-11,42;CL:0000223,4.87e-11,58;CL:0002251,1.69e-09,20;CL:0002322,1.24e-07,5;CL:0000039,3.77e-07,7;CL:0000586,3.77e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.89e-29!106;DOID:162!1.43e-23!235;DOID:0050687!6.47e-23!143;DOID:14566!2.47e-22!239;DOID:0050686!4.52e-11!137;DOID:1749!4.05e-08!14;DOID:299!3.13e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.22e-10;14!DOID:305;6.60e-09;106!DOID:299;1.36e-07;25!DOID:4362;9.84e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.44e-28,106;DOID:0050687,1.18e-21,143;DOID:162,1.20e-19,235;DOID:14566,1.15e-18,239;DOID:1749,1.42e-10,14;DOID:0050686,9.64e-10,137;DOID:299,1.28e-07,25;DOID:4362,8.18e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0004921!6.25e-12!129;UBERON:0004185!6.25e-12!129;UBERON:0004119!2.67e-11!169;UBERON:0000925!2.67e-11!169;UBERON:0006595!2.67e-11!169;UBERON:0001007!3.90e-11!155;UBERON:0001555!3.90e-11!155;UBERON:0007026!3.90e-11!155;UBERON:0001004!9.46e-10!72;UBERON:0000077!2.25e-08!130;UBERON:0001041!3.51e-08!98;UBERON:0000065!3.80e-08!53;UBERON:0005409!5.94e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;4.09e-11;33!UBERON:0005409;3.51e-09;22!UBERON:0001041;7.01e-08;14!UBERON:0001555;1.07e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,6.04e-11,145;UBERON:0001555,6.04e-11,145;UBERON:0007026,6.04e-11,145;UBERON:0004119,1.23e-10,160;UBERON:0000925,1.23e-10,160;UBERON:0006595,1.23e-10,160;UBERON:0004921,2.33e-10,118;UBERON:0005409,5.17e-09,25;UBERON:0001004,5.57e-07,74 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0.261185628199839,0.245733936501509,0,0.218441372130172,0,0.247532705920093,0.331397375727916,0,0,0,0,0,0,0,0,0,0.125542639594803,2.13957536094264,2.38091709404843,1.25937250101887,0.786728553697808,0,0,0.919421224478927,0.6024118375565,0.739508020333575,1.78174561334694,3.41206157969812,0,0.553995408531877,0.401088894940283,0,0,0.32389366601898,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0.329851300186716,0,0,0,0.56738522469114,0,0,0,0,1.21079900526674,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0.546138611262131,1.77901850772711,0.853460445133014,0,0.574752439954483,0,0,0,0,0.764546456250458,0,1.12101712596307,0,0.393419540227666,1.57204305099666,1.02800749499755,0.334372990781356,0.651844533267181,0,0,0,1.17842362989935,0.443067789167242,0.541607727530031,0.384273959177026,0.260118695119756,0.164437904603676,0,0.869409257205157,0.444859689486181,0.267540828089713,0,0.113309342697566,0.766440987203842,0.34362744548263,0.253019692019503,0.318565414324097,0,0,0,0.255973222308837,0,0,0.821127996921047,0.403213486449465,0.534880391567015,0.289648807765598,0,0,0,0,0,0,0,0,0.283604451492204,0.221729397462564,0.175669571386252,0.523916301990851,0.728590576585084,1.11235332835329,0,0,0,0.715471872916026,0,0,0.198762407366705,0,0.347140501607594,0,0,0.550236083880135,0,0,0,0,0,0,0,0.735326160691737,0,0.535798369704479,0.22452937262617,0.675668882899933,0,0,0.183201743930407,0,0,0,0,0,0,0.286836620748814,0.354668382198357,0.560677600142307,1.06748995729705,0,0,0,0.326923806226917,0.302714855289863,0,0,0.312160076830321,0,0.149448680551801,0.352303495931295,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340296549480063,0,0.427114777637135,0,0,0,0,0,0.168776332241266,0.0974370051611986,0,0.0920498986422993,0.161646056818812,0,0.10075209822764,0,1.35282597214308,1.63647672354501,2.00763216772303,6.58658013099815,6.49395864775278,4.53156377191122,4.25010325563019,3.28017106138317,2.91981887260664,0,0,0,0,0,0.354920400119532,0.842923450390509,0.964044119533928,1.43382164552112,0.217879444092406,1.42362371466658,0.674156540800822,0.196221465125346,0.769494313892781,0,0,0,0,0,0,0,0.441463099414651,1.96781501668982,0,1.09750285408626,1.1240175325762,0.904760751704678,1.574003567695,0,0,0,0.115930404975077,0.117408694235822,0.144366447761074,0,0.190254152234598,3.95102198979638,0.858486162094873,0,0,0.297262324577456,0,0.335964256397719,0.992425680696705,1.79117045405697,1.74380363108377,0.766765358330422,0,0.088048434013226,0,0,0.12624243342638,0.063497894292169,0.763976851116555,0,0,0.205654985406647,0,0.285826432630578,0.112131084345361,0,0.07333828582095,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.289562613335158,0,0.537182889719687,0.896681151948218,0.394061520403854,0.431255149719035,0.256686072559497,0,0,0,0,0,1.49801404789436,0,0.414415513436035,0,0,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0.184369168541703,0.173767228936166,0.195801157462741,0,0.206768026122887,0.647142602455851,0.533637789017222,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,1.57117284469109,2.00506470303285,1.65745780084613,0,0,0,0,0.616122696835318,0,0,0.211103257785751,0,0,0.215915916102139,0,0,0,0.254876273045038,0.831076008928724,0.223874754722178,0.657779629937804,0.522870902049801,0.512900250232778,0.984043937099117,0.325378394664303,0.9273691048295,0.27470839445503,0.247528499761764,0.574265537996172,0,0,0,0,0.15350367472613,0.275673144969061,0.107420244868274,0,0.0852266274161009,0.356128142586949,1.4875642382488,1.92190067365106,2.80747967488085,1.4162089319777,0,0,0,0,0,0.869932992075073,0.37064843820784,0.286249773483982,0.372158369359667,0,0.190630193923825,0,0,0,0,0.179872457583315,0,0.235624804691373,0,0,0,0,0,0,0,0.424216295861138,1.13008116620243,0,1.32687795048244,0,0,0.655894752046633,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0.188287601553558,0,0,0.443430153536676,0.918893600827838,0,0,0.569647187174163,0,0.411362273086194,0,0,0.79312517629427,2.02965735142199,0.962479855263359,5.3908847515827,0.557409525377156,0,0.284567373393656,0.478278818186467,0.199579371432817,0,0.211673582723883,0,0.280797178113459,0,0.313359791546046,0,0.169291777801603,0.963528450622197,0.201799707191048,2.55507742614196,0,0.307240764308458,0.223676107892416,0.500547425135725,0,0.835218521685727,7.38524393686274,0.540911356951966,0.33307196799782,8.45922030527097,6.73705945469591,0,1.21360521749513,0.334330152832435,0,1.90995587790152,0.593929361665277,1.53580351049616,0.994147647766298,0,0.111308705022906,0.329607748453519,4.43363357068786,0.19924798825107,2.76283915531148,4.28285671352269,0.306806047506464,3.81562896929315,0,1.61763032065188,0.895105873378046,0,0.690503839458535,0,0,0,0.185536196323703,0,4.16684417736373,5.33505999976794,0,2.27586896570999,4.57656570526979,4.01859059005492,1.03423011972439,0.291604613383254,0.173624994933292,1.77148277162768,0.602982193127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| ||
|short_description=p5@USP48 | |||
}} | }} |
Latest revision as of 07:11, 25 September 2015
Short description: | p5@USP48 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_USP48_5end |
Coexpression cluster: | NA |
Association with transcript: | -47bp_to_ENST00000529637_5end |
EntrezGene: | USP48 |
HGNC: | 18533 |
UniProt: | B7ZKS7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.02e-11 | 253 |
endo-epithelial cell | 3.92e-11 | 42 |
endodermal cell | 4.87e-11 | 58 |
epithelial cell of alimentary canal | 1.69e-09 | 20 |
embryonic stem cell | 1.24e-07 | 5 |
germ line cell | 3.77e-07 | 7 |
germ cell | 3.77e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
digestive system | 6.04e-11 | 145 |
digestive tract | 6.04e-11 | 145 |
primitive gut | 6.04e-11 | 145 |
endoderm-derived structure | 1.23e-10 | 160 |
endoderm | 1.23e-10 | 160 |
presumptive endoderm | 1.23e-10 | 160 |
subdivision of digestive tract | 2.33e-10 | 118 |
gastrointestinal system | 5.17e-09 | 25 |
respiratory system | 5.57e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.44e-28 | 106 |
cell type cancer | 1.18e-21 | 143 |
cancer | 1.20e-19 | 235 |
disease of cellular proliferation | 1.15e-18 | 239 |
squamous cell carcinoma | 1.42e-10 | 14 |
organ system cancer | 9.64e-10 | 137 |
adenocarcinoma | 1.28e-07 | 25 |
cervical cancer | 8.18e-07 | 5 |