FFCP PHASE1:Hg19::chr1:68962782..68962801,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:68962782..68962801,-
|short_description=p3@DEPDC1
|description=CAGE_peak_3_at_DEPDC1_5end
|association_with_transcript=0bp_to_ENST00000456315,NM_001114120,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55635 | |EntrezGene=55635 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22949 | |HGNC=22949 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TB30 | |UniProt=Q5TB30 | ||
|association_with_transcript=0bp_to_ENST00000456315,NM_001114120,NM_017779,uc001del.3,uc001dem.3_5end | |||
|cluster_id=chr1:68962782..68962801,- | |||
|coexpression_cluster_id=C3508 | |||
|description=CAGE_peak_3_at_DEPDC1_5end | |||
|id=chr1:68962782..68962801,- | |||
|ontology_enrichment_celltype=CL:0000066!8.21e-12!254;CL:0000548!1.10e-10!679;CL:0000004!1.10e-10!679;CL:0000255!1.10e-10!679;CL:0000012!1.59e-10!682;CL:0000055!1.99e-09!180;CL:0002321!1.10e-07!248;CL:0000220!1.97e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002319;5.99e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.70e-09,253;CL:0002319,7.98e-07,25;CL:0000333,8.23e-07,41 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!2.30e-51!239;DOID:162!3.45e-51!235;DOID:0050687!6.45e-30!143;DOID:0050686!1.22e-20!137;DOID:305!9.08e-20!106;DOID:2531!1.42e-11!51;DOID:0060083!1.42e-11!51;DOID:1240!5.18e-09!39;DOID:3095!2.54e-08!22;DOID:2994!2.54e-08!22;DOID:8692!6.61e-07!31;DOID:7!7.04e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.27e-08;22!DOID:2994;1.27e-08;22!DOID:0050687;8.87e-08;143!DOID:2531;1.60e-07;51!DOID:0060083;1.60e-07;51!DOID:1240;2.56e-07;39!DOID:1115;6.01e-07;20!DOID:8692;9.01e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,7.50e-50,239;DOID:162,8.98e-50,235;DOID:0050687,1.13e-28,143;DOID:0050686,9.94e-20,137;DOID:305,1.25e-18,106;DOID:2531,2.42e-12,51;DOID:0060083,2.42e-12,51;DOID:1240,7.37e-10,39;DOID:3095,1.50e-08,22;DOID:2994,1.50e-08,22;DOID:8692,1.50e-07,31;DOID:1115,6.60e-07,20 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,1.07050261945492,0,0,0,0,0,0,0,1.22866968250754,1.39560233594486,1.09220686065086,0.527533956456907,0.866364470720326,0,0.672325146451775,1.80808358407193,0,1.95173119516203,1.84681587115182,2.04000691244253,0,2.57612388417951,8.48621435451882,5.02170558379211,5.04328477936478,5.33653831424647,5.82459781721226,0,0,0,2.75826367343678,1.204823675113,0,0.0774672005803016,4.54941543959749,1.76160263600908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,2.10707267820062,0,0,0,0,0,0,0,2.22820913770347,0,0,0,2.0494611156108,1.1705341280389,1.80881695064044,2.21080014228679,0,0,0,0,1.92625882585863,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,2.81297636055767,7.22878304769133,0.50133791063589,1.01392563272577,2.3858578411533,0.486634870302636,5.2939497611878,2.88248216701333,3.86473057049755,0.982343066232845,0.364295288292542,2.59549109949101,0,0,0,0,0,0,1.59009925893364,0,0.694281003215189,0,0.838998872419812,3.30141650328081,1.25396979922086,0,0.35576626268671,0.66944122552934,0.805658634218294,0,0.732186172644509,3.30896772311282,1.62028389576352,5.80448233846518,10.7774098860562,8.44586103624917,1.53316637465883,0,3.66403487860815,0,0,0.436094052142534,0,3.92554586160197,0,3.15520282823695,3.90135220418193,2.24271040056923,0,0.24666754841716,4.04574346019696,2.55950276932407,7.19232373699218,0.908144565869588,0,2.34321431833797,0.936480230490962,0.570471821544449,1.04614076386261,10.6865393765826,7.60802838530218,12.9214742166069,2.44985005505872,7.49289335601785,1.44656093646072,3.56400857184616,0.494533858557114,0,0,8.58514181165738,12.0113779077086,6.09541054065202,3.07284334616587,1.22595118319608,1.95309476578576,4.53728732640084,3.7671823494661,0.427114777637135,0.635795703478686,3.60109315301283,1.64884046781502,0.515281080091258,0.744467425326359,4.05063197379039,3.21542117031955,2.77677151668526,0.184099797284599,0.484938170456436,1.42003837006646,2.51880245569101,2.54340888465731,1.15956511897978,1.63647672354501,2.29443676311203,3.41526377162867,3.5783037446801,5.34492137199785,4.87206958572241,3.78481276313443,5.10968302706162,0,1.28648187638577,1.38134921352481,0,0,5.91534000199219,4.21461725195254,4.82022059766964,4.85293480022533,3.7039505495709,6.8808479542218,3.10112008768378,4.51309369788296,4.61696588335668,0.738155454624648,0,0.8231480226628,1.47008711385542,0,0,0,12.8024298830249,0.983907508344908,2.57351715447788,0.109750285408626,1.1240175325762,6.53438320675601,3.51836091602412,0.651616610620649,2.07986957055916,1.44331342025273,2.43453850447661,0.587043471179108,0.866198686566443,0.925971025153221,0.761016608938393,1.58040879591855,0.858486162094873,0.246217006087397,1.63802985597466,1.93220510975347,0.93733833986777,1.00789276919316,0.425325291727159,3.31366534000539,3.19697332365358,3.83382679165211,0.985326475791887,1.05658120815871,0,0,0,4.00036734040665,1.90994212779139,0,0,5.03854714246285,6.30720421472227,1.71495859578347,2.46688385559794,0,9.6806537283654,0,0,8.45302752556,0.531876233169741,2.08014873822732,1.02882949704857,1.41849132023278,2.66422179016099,1.14382394926518,0,0,7.16619605446217,0,7.91951872933429,0,0,0.99972991182057,0,0.502257091432126,0,1.19812427745791,0,7.13184525203592,3.04040744001916,2.05476322550383,4.1184021545176,5.71634234366989,0,0,0,1.77866236955724,0,1.54657762555539,1.17261385734044,3.18969375826582,0,0,0,0.12269149171914,0,0.813795071099207,0.831883446123229,2.14114786556594,0.946214490203608,2.45996971484698,0,0,1.03473071292505,6.64225598535437,1.84369168541703,3.82287903659565,0.195801157462741,0,0,0,0,0.303127571446259,0,1.81434175997808,0.248107807818777,0.920771839728375,0,0,2.55853624533352,0,0,8.48153315914606,2.30830242907065,7.47357119725663,4.67328986265259,5.92672930145792,0.604297247958111,1.20303882181971,0.0920809889358963,4.59257792658427,4.18809686415449,0.393373244878272,0.451199612907412,3.31165949548983,0,1.46139224653261,2.74434235121477,1.13733384070897,1.36074964221213,6.26156156696204,0,0.541892875087706,0,2.03901018436031,1.66215201785745,1.34324852833307,8.77039506583738,6.27445082459761,5.64190275256056,0.328014645699706,1.95227036798582,0.206082023295445,10.3473495244728,7.50836449277351,0.574265537996172,0,3.21367859688319,0.773365746336976,7.70243085573222,8.59620578466325,8.82154063900996,4.18938954986267,4.78555089916954,9.289702388355,0.801288320820636,0.330569830721956,1.34533047155574,3.1903178123646,0.10115778085555,0,0.94443704049192,1.3940745403212,0.924100740528266,0,0.869932992075073,0.37064843820784,1.14499909393593,4.46590043231601,4.42931194606216,1.90630193923825,0.255897791311334,0,0.636406495851874,0.78494864019923,2.87795932133304,4.94166653524899,5.1837457032102,0.606547444719948,0,2.10629228119491,0,0.243713489631284,1.05650146756755,4.50449707646353,1.27264888758341,0,1.10273068709225,0,0.438450885253763,0,1.9676842561399,0.405820753925408,3.40805847909725,1.69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| ||
|short_description=p3@DEPDC1 | |||
}} | }} |
Latest revision as of 03:13, 19 September 2015
Short description: | p3@DEPDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DEPDC1_5end |
Coexpression cluster: | C3508_hepatoblastoma_non_neuroepithelioma_fibrous_Reticulocytes_myxofibrosarcoma_Fibroblast |
Association with transcript: | 0bp_to_ENST00000456315, NM_001114120, NM_017779, uc001del.3, uc001dem.3_5end |
EntrezGene: | DEPDC1 |
HGNC: | 22949 |
UniProt: | Q5TB30 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.70e-09 | 253 |
neural cell | 7.98e-07 | 25 |
migratory neural crest cell | 8.23e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 7.50e-50 | 239 |
cancer | 8.98e-50 | 235 |
cell type cancer | 1.13e-28 | 143 |
organ system cancer | 9.94e-20 | 137 |
carcinoma | 1.25e-18 | 106 |
hematologic cancer | 2.42e-12 | 51 |
immune system cancer | 2.42e-12 | 51 |
leukemia | 7.37e-10 | 39 |
germ cell and embryonal cancer | 1.50e-08 | 22 |
germ cell cancer | 1.50e-08 | 22 |
myeloid leukemia | 1.50e-07 | 31 |
sarcoma | 6.60e-07 | 20 |